Wall clock time and date at job start Tue Mar 31 2020 06:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.01464 * 2 1 4 4 C 1.54263 * 110.03396 * 238.60581 * 2 1 3 5 5 C 1.55013 * 104.14119 * 217.06492 * 4 2 1 6 6 C 1.54894 * 102.75068 * 37.95307 * 5 4 2 7 7 C 1.53876 * 110.03202 * 121.39203 * 2 1 3 8 8 H 1.09001 * 110.03366 * 0.02562 * 7 2 1 9 9 N 1.46503 * 110.03133 * 238.62062 * 7 2 1 10 10 C 1.34771 * 119.99932 * 155.00135 * 9 7 2 11 11 O 1.21586 * 120.00592 * 359.97438 * 10 9 7 12 12 N 1.34777 * 119.99913 * 180.02562 * 10 9 7 13 13 C 1.47020 * 125.64985 * 359.68835 * 12 10 9 14 14 C 1.54329 * 107.26940 * 178.85121 * 13 12 10 15 15 C 1.55160 * 103.02176 * 338.14228 * 14 13 12 16 16 O 1.42900 * 111.03269 * 277.21902 * 15 14 13 17 17 C 1.50695 * 111.00910 * 153.37978 * 15 14 13 18 18 H 1.08005 * 119.99517 * 6.35087 * 17 15 14 19 19 C 1.37877 * 120.00376 * 186.34980 * 17 15 14 20 20 N 1.31514 * 119.99718 * 359.97438 * 19 17 15 21 21 Si 1.86791 * 120.00241 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47158 * 60.00123 * 21 19 17 23 23 H 1.48504 * 109.47388 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47086 * 299.99897 * 21 19 17 25 25 C 1.47425 * 125.64781 * 179.97438 * 12 10 9 26 26 H 1.08991 * 109.47375 * 299.29850 * 1 2 3 27 27 H 1.09000 * 109.46762 * 59.30474 * 1 2 3 28 28 H 1.09001 * 109.46746 * 179.29761 * 1 2 3 29 29 H 1.08996 * 110.48639 * 335.74057 * 4 2 1 30 30 H 1.09002 * 110.48477 * 98.37879 * 4 2 1 31 31 H 1.08997 * 110.76517 * 279.63453 * 5 4 2 32 32 H 1.08997 * 110.90480 * 156.33575 * 5 4 2 33 33 H 1.08995 * 110.48895 * 203.36605 * 6 5 4 34 34 H 1.09007 * 110.59758 * 80.78144 * 6 5 4 35 35 H 0.97000 * 119.99905 * 334.99999 * 9 7 2 36 36 H 1.09001 * 109.88409 * 298.40073 * 13 12 10 37 37 H 1.08998 * 109.88336 * 59.55720 * 13 12 10 38 38 H 1.08999 * 110.85261 * 219.67216 * 14 13 12 39 39 H 1.09001 * 110.51697 * 96.45061 * 14 13 12 40 40 H 0.96700 * 113.99935 * 173.66692 * 16 15 14 41 41 H 0.96997 * 120.00502 * 179.97438 * 20 19 17 42 42 H 1.08998 * 110.36729 * 322.92833 * 25 12 10 43 43 H 1.09001 * 110.36925 * 85.25366 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7550 -1.2371 5 6 3.3151 -1.4996 -0.7181 6 6 2.8886 -1.9396 0.7044 7 6 2.0571 -0.7530 1.2341 8 1 1.2229 -1.1189 1.8327 9 7 2.9023 0.1323 2.0390 10 6 3.0587 -0.1004 3.3573 11 8 2.4979 -1.0449 3.8786 12 7 3.8358 0.7144 4.0979 13 6 4.5728 1.8839 3.5973 14 6 5.2949 2.5211 4.8032 15 6 4.4769 2.0015 6.0150 16 8 3.3122 2.8016 6.2285 17 6 5.3272 1.9480 7.2579 18 1 6.3309 2.3466 7.2430 19 6 4.8241 1.3902 8.4140 20 7 3.6017 0.9052 8.4322 21 14 5.8784 1.3232 9.9545 22 1 6.2560 2.7021 10.3563 23 1 5.1114 0.6809 11.0519 24 1 7.1060 0.5339 9.6801 25 6 4.0925 0.5771 5.5432 26 1 -0.3634 0.5028 0.8961 27 1 -0.3633 0.5246 -0.8837 28 1 -0.3633 -1.0276 -0.0126 29 1 1.3146 -1.4659 -1.5967 30 1 2.3289 -0.0528 -2.0258 31 1 4.1719 -0.8273 -0.6739 32 1 3.5379 -2.3666 -1.3400 33 1 3.7646 -2.1020 1.3323 34 1 2.2795 -2.8426 0.6601 35 1 3.3495 0.8860 1.6232 36 1 5.3014 1.5707 2.8495 37 1 3.8775 2.6018 3.1622 38 1 5.2549 3.6090 4.7489 39 1 6.3268 2.1743 4.8575 40 1 2.7200 2.4596 6.9122 41 1 3.2478 0.5124 9.2454 42 1 3.1937 0.2368 6.0574 43 1 4.9159 -0.1153 5.7182 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591954540.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:34 Heat of formation + Delta-G solvation = -93.624943 kcal Electronic energy + Delta-G solvation = -23270.959268 eV Core-core repulsion = 19929.232176 eV Total energy + Delta-G solvation = -3341.727092 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.94025 -38.47064 -36.97351 -34.17978 -33.13784 -32.19992 -31.31955 -30.05718 -27.98517 -27.38789 -25.33825 -24.46267 -22.54799 -20.92902 -19.98458 -19.58021 -19.12089 -17.44088 -16.96730 -16.39254 -15.44705 -15.10121 -14.84233 -14.72934 -14.38903 -13.92065 -13.60674 -13.32055 -13.01564 -12.96333 -12.79180 -12.35327 -12.06821 -11.64261 -11.57275 -11.47226 -11.24303 -11.08138 -10.99446 -10.85066 -10.80327 -10.72743 -10.69224 -10.57287 -10.46626 -10.16809 -9.53211 -9.32453 -8.71565 -8.66083 -8.32450 -7.63514 -6.24354 -4.34420 3.19891 3.25602 3.30033 3.32017 3.80255 4.28236 4.40890 4.51644 4.55742 4.76146 5.02589 5.15625 5.29434 5.36726 5.39599 5.43954 5.50791 5.59172 5.67770 5.70391 5.76469 5.81125 5.87041 5.91125 6.03242 6.04355 6.09785 6.21013 6.23690 6.29189 6.54089 6.73651 6.92217 6.94732 7.03404 7.27675 7.36696 7.72033 7.77470 8.06961 8.60361 8.70320 9.21656 9.33178 9.41343 10.82608 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033201 B = 0.003881 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.143146 B = 7213.188723 C = 7289.353162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 H 0.077 0.923 4 C -0.119 4.119 5 C -0.125 4.125 6 C -0.135 4.135 7 C 0.163 3.837 8 H 0.090 0.910 9 N -0.744 5.744 10 C 0.715 3.285 11 O -0.597 6.597 12 N -0.629 5.629 13 C 0.106 3.894 14 C -0.116 4.116 15 C 0.248 3.752 16 O -0.583 6.583 17 C -0.539 4.539 18 H 0.066 0.934 19 C 0.072 3.928 20 N -0.892 5.892 21 Si 0.903 3.097 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.115 3.885 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.391 0.609 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.381 0.619 41 H 0.270 0.730 42 H 0.085 0.915 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.655 -1.211 -17.170 17.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 H 0.095 0.905 4 C -0.156 4.156 5 C -0.162 4.162 6 C -0.174 4.174 7 C 0.057 3.943 8 H 0.108 0.892 9 N -0.400 5.400 10 C 0.417 3.583 11 O -0.476 6.476 12 N -0.366 5.366 13 C -0.018 4.018 14 C -0.154 4.154 15 C 0.208 3.792 16 O -0.391 6.391 17 C -0.578 4.578 18 H 0.084 0.916 19 C -0.132 4.132 20 N -0.530 5.530 21 Si 0.731 3.269 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.007 4.007 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.224 0.776 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.231 0.769 41 H 0.080 0.920 42 H 0.103 0.897 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.990 -1.693 -17.150 17.348 hybrid contribution 0.550 -0.074 1.093 1.225 sum -1.440 -1.767 -16.057 16.218 Atomic orbital electron populations 1.21846 0.94322 1.02037 1.01872 1.22052 0.96334 0.99709 0.94151 0.90497 1.22466 0.97491 0.98930 0.96745 1.22523 0.97539 0.99786 0.96371 1.22804 1.00519 0.98029 0.96038 1.21436 0.92871 0.89244 0.90721 0.89237 1.45299 1.54040 1.33186 1.07507 1.15555 0.79688 0.82296 0.80712 1.90875 1.53012 1.32086 1.71666 1.47942 1.48711 1.28505 1.11453 1.21906 0.94542 0.87815 0.97496 1.22587 0.98814 1.00198 0.93776 1.19625 0.83583 0.84859 0.91166 1.86097 1.36566 1.54345 1.62121 1.21420 1.00691 1.40524 0.95132 0.91629 1.25073 0.95183 0.93696 0.99214 1.69713 1.15136 1.39049 1.29094 0.86470 0.80207 0.78415 0.81843 1.20032 1.21094 1.20035 1.23100 1.01449 1.00772 0.75423 0.92337 0.92571 0.92374 0.91322 0.91685 0.91653 0.91715 0.91125 0.91086 0.77568 0.93250 0.92782 0.90833 0.90490 0.76942 0.91957 0.89707 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.84 37.16 0.33 -1.01 16 2 C -0.10 -1.04 3.26 -89.50 -0.29 -1.33 16 3 H 0.08 0.76 7.62 -51.93 -0.40 0.36 16 4 C -0.12 -1.00 6.37 -25.01 -0.16 -1.16 16 5 C -0.12 -1.17 6.91 -24.67 -0.17 -1.34 16 6 C -0.13 -1.65 6.54 -25.07 -0.16 -1.81 16 7 C 0.16 2.18 2.90 -66.81 -0.19 1.99 16 8 H 0.09 1.41 7.09 -51.93 -0.37 1.04 16 9 N -0.74 -11.49 4.99 -57.58 -0.29 -11.78 16 10 C 0.72 14.83 8.49 -86.92 -0.74 14.10 16 11 O -0.60 -14.73 16.25 5.29 0.09 -14.65 16 12 N -0.63 -13.27 3.33 -176.25 -0.59 -13.85 16 13 C 0.11 1.86 6.15 -3.06 -0.02 1.85 16 14 C -0.12 -2.30 6.13 -24.89 -0.15 -2.45 16 15 C 0.25 6.04 0.87 -89.63 -0.08 5.96 16 16 O -0.58 -14.94 13.16 -35.23 -0.46 -15.40 16 17 C -0.54 -14.10 8.27 -34.44 -0.28 -14.39 16 18 H 0.07 1.67 7.79 -52.48 -0.41 1.26 16 19 C 0.07 1.89 5.29 -17.82 -0.09 1.79 16 20 N -0.89 -24.04 10.69 55.43 0.59 -23.44 16 21 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 C 0.11 2.81 5.38 -2.54 -0.01 2.80 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 29 H 0.07 0.54 7.84 -51.93 -0.41 0.13 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 1.02 8.04 -51.93 -0.42 0.60 16 34 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 35 H 0.39 5.14 7.31 -40.82 -0.30 4.84 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 40 H 0.38 10.05 7.56 45.56 0.34 10.40 16 41 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.08 2.36 7.33 -51.93 -0.38 1.97 16 43 H 0.06 1.42 8.03 -51.93 -0.42 1.00 16 LS Contribution 341.04 15.07 5.14 5.14 Total: -1.00 -29.94 341.04 -9.10 -39.03 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -6.53 Total: 14.53 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -2.03 Total: 4.99 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.28 Total: -49.08 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.38 Total: -30.05 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.94 -9.10 -39.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591954540.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.591 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds