Wall clock time and date at job start Tue Mar 31 2020 06:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.01464 * 2 1 4 4 C 1.54263 * 110.03396 * 238.60581 * 2 1 3 5 5 C 1.55013 * 104.14119 * 217.06492 * 4 2 1 6 6 C 1.54894 * 102.75068 * 37.95307 * 5 4 2 7 7 C 1.53876 * 110.03202 * 121.39203 * 2 1 3 8 8 H 1.09001 * 110.03366 * 0.02562 * 7 2 1 9 9 N 1.46503 * 110.03133 * 238.62062 * 7 2 1 10 10 C 1.34771 * 119.99932 * 155.00135 * 9 7 2 11 11 O 1.21586 * 120.00592 * 359.97438 * 10 9 7 12 12 N 1.34777 * 119.99913 * 180.02562 * 10 9 7 13 13 C 1.47020 * 125.64985 * 359.68835 * 12 10 9 14 14 C 1.54329 * 107.26940 * 178.85121 * 13 12 10 15 15 C 1.55160 * 103.02176 * 338.14228 * 14 13 12 16 16 O 1.42900 * 111.03269 * 277.21902 * 15 14 13 17 17 C 1.50695 * 111.00910 * 153.37978 * 15 14 13 18 18 H 1.08005 * 119.99517 * 6.35087 * 17 15 14 19 19 C 1.37877 * 120.00376 * 186.34980 * 17 15 14 20 20 N 1.31514 * 119.99718 * 359.97438 * 19 17 15 21 21 Si 1.86791 * 120.00241 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47158 * 60.00123 * 21 19 17 23 23 H 1.48504 * 109.47388 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47086 * 299.99897 * 21 19 17 25 25 C 1.47425 * 125.64781 * 179.97438 * 12 10 9 26 26 H 1.08991 * 109.47375 * 299.29850 * 1 2 3 27 27 H 1.09000 * 109.46762 * 59.30474 * 1 2 3 28 28 H 1.09001 * 109.46746 * 179.29761 * 1 2 3 29 29 H 1.08996 * 110.48639 * 335.74057 * 4 2 1 30 30 H 1.09002 * 110.48477 * 98.37879 * 4 2 1 31 31 H 1.08997 * 110.76517 * 279.63453 * 5 4 2 32 32 H 1.08997 * 110.90480 * 156.33575 * 5 4 2 33 33 H 1.08995 * 110.48895 * 203.36605 * 6 5 4 34 34 H 1.09007 * 110.59758 * 80.78144 * 6 5 4 35 35 H 0.97000 * 119.99905 * 334.99999 * 9 7 2 36 36 H 1.09001 * 109.88409 * 298.40073 * 13 12 10 37 37 H 1.08998 * 109.88336 * 59.55720 * 13 12 10 38 38 H 1.08999 * 110.85261 * 219.67216 * 14 13 12 39 39 H 1.09001 * 110.51697 * 96.45061 * 14 13 12 40 40 H 0.96700 * 113.99935 * 173.66692 * 16 15 14 41 41 H 0.96997 * 120.00502 * 179.97438 * 20 19 17 42 42 H 1.08998 * 110.36729 * 322.92833 * 25 12 10 43 43 H 1.09001 * 110.36925 * 85.25366 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7550 -1.2371 5 6 3.3151 -1.4996 -0.7181 6 6 2.8886 -1.9396 0.7044 7 6 2.0571 -0.7530 1.2341 8 1 1.2229 -1.1189 1.8327 9 7 2.9023 0.1323 2.0390 10 6 3.0587 -0.1004 3.3573 11 8 2.4979 -1.0449 3.8786 12 7 3.8358 0.7144 4.0979 13 6 4.5728 1.8839 3.5973 14 6 5.2949 2.5211 4.8032 15 6 4.4769 2.0015 6.0150 16 8 3.3122 2.8016 6.2285 17 6 5.3272 1.9480 7.2579 18 1 6.3309 2.3466 7.2430 19 6 4.8241 1.3902 8.4140 20 7 3.6017 0.9052 8.4322 21 14 5.8784 1.3232 9.9545 22 1 6.2560 2.7021 10.3563 23 1 5.1114 0.6809 11.0519 24 1 7.1060 0.5339 9.6801 25 6 4.0925 0.5771 5.5432 26 1 -0.3634 0.5028 0.8961 27 1 -0.3633 0.5246 -0.8837 28 1 -0.3633 -1.0276 -0.0126 29 1 1.3146 -1.4659 -1.5967 30 1 2.3289 -0.0528 -2.0258 31 1 4.1719 -0.8273 -0.6739 32 1 3.5379 -2.3666 -1.3400 33 1 3.7646 -2.1020 1.3323 34 1 2.2795 -2.8426 0.6601 35 1 3.3495 0.8860 1.6232 36 1 5.3014 1.5707 2.8495 37 1 3.8775 2.6018 3.1622 38 1 5.2549 3.6090 4.7489 39 1 6.3268 2.1743 4.8575 40 1 2.7200 2.4596 6.9122 41 1 3.2478 0.5124 9.2454 42 1 3.1937 0.2368 6.0574 43 1 4.9159 -0.1153 5.7182 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591954540.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:34 Heat of formation + Delta-G solvation = -114.526709 kcal Electronic energy + Delta-G solvation = -23271.865636 eV Core-core repulsion = 19929.232176 eV Total energy + Delta-G solvation = -3342.633460 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.41492 -39.78298 -38.57373 -36.02907 -34.51268 -34.22960 -32.12829 -31.72138 -29.61090 -28.63483 -26.91455 -25.68565 -24.11708 -21.89769 -21.50672 -20.96303 -20.50512 -19.17833 -18.69567 -17.63311 -17.04622 -16.81529 -16.25669 -16.15771 -15.94675 -15.09690 -14.92705 -14.73371 -14.58386 -14.48971 -13.85324 -13.69402 -13.52291 -13.33599 -13.18036 -12.80892 -12.56959 -12.44246 -12.33684 -12.32395 -12.25216 -12.08896 -11.89928 -11.67286 -11.56895 -11.45951 -11.26613 -11.16236 -10.65516 -10.31905 -10.11299 -9.31042 -8.23768 -6.41613 1.43800 1.44066 1.52601 1.71975 2.17181 2.38884 3.02143 3.11904 3.54856 3.70139 3.79863 3.95182 4.08892 4.19194 4.30711 4.34313 4.46609 4.50466 4.60444 4.61879 4.67855 4.75153 4.77079 4.96506 4.97193 5.01109 5.07023 5.10521 5.16201 5.24485 5.28548 5.32441 5.36085 5.39780 5.46875 5.51098 5.71656 5.76149 6.06185 6.21476 6.65771 7.09601 7.27703 7.35224 7.61172 8.81201 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033201 B = 0.003881 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.143146 B = 7213.188723 C = 7289.353162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.086 0.914 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.136 4.136 7 C 0.155 3.845 8 H 0.058 0.942 9 N -0.721 5.721 10 C 0.709 3.291 11 O -0.646 6.646 12 N -0.635 5.635 13 C 0.108 3.892 14 C -0.110 4.110 15 C 0.232 3.768 16 O -0.587 6.587 17 C -0.558 4.558 18 H 0.070 0.930 19 C 0.026 3.974 20 N -0.916 5.916 21 Si 0.965 3.035 22 H -0.269 1.269 23 H -0.287 1.287 24 H -0.269 1.269 25 C 0.130 3.870 26 H 0.039 0.961 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.406 0.594 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.372 0.628 41 H 0.269 0.731 42 H 0.041 0.959 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.549 -0.153 -19.813 19.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 H 0.104 0.896 4 C -0.147 4.147 5 C -0.154 4.154 6 C -0.175 4.175 7 C 0.050 3.950 8 H 0.077 0.923 9 N -0.378 5.378 10 C 0.411 3.589 11 O -0.529 6.529 12 N -0.372 5.372 13 C -0.014 4.014 14 C -0.148 4.148 15 C 0.192 3.808 16 O -0.394 6.394 17 C -0.596 4.596 18 H 0.088 0.912 19 C -0.175 4.175 20 N -0.555 5.555 21 Si 0.790 3.210 22 H -0.193 1.193 23 H -0.212 1.212 24 H -0.194 1.194 25 C 0.006 3.994 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.243 0.757 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.220 0.780 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.862 -0.594 -19.866 19.894 hybrid contribution 0.174 -0.429 1.908 1.963 sum -0.688 -1.023 -17.959 18.001 Atomic orbital electron populations 1.21847 0.93892 1.02257 1.02015 1.22036 0.96620 0.99873 0.92990 0.89573 1.22449 0.96943 0.99194 0.96132 1.22498 0.98155 1.00567 0.94191 1.22770 0.99242 0.97735 0.97715 1.21690 0.91921 0.90104 0.91333 0.92350 1.45145 1.53495 1.33594 1.05527 1.15805 0.79306 0.81683 0.82144 1.90835 1.54856 1.34199 1.73027 1.47890 1.49375 1.29717 1.10199 1.22103 0.95305 0.86733 0.97283 1.22592 0.98831 1.01121 0.92240 1.19865 0.83422 0.84920 0.92634 1.86088 1.36966 1.54635 1.61739 1.21786 1.01161 1.40526 0.96173 0.91203 1.25844 0.96199 0.93356 1.02097 1.69848 1.16527 1.39598 1.29527 0.85508 0.78670 0.78551 0.78304 1.19348 1.21214 1.19437 1.22618 0.98541 1.00625 0.77601 0.94148 0.90361 0.92282 0.90385 0.89477 0.91265 0.90220 0.93814 0.90889 0.75720 0.89290 0.90927 0.89545 0.89314 0.77953 0.92218 0.94019 0.94544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.84 71.98 0.64 -1.78 16 2 C -0.10 -1.69 3.26 -10.07 -0.03 -1.73 16 3 H 0.09 1.39 7.62 -2.39 -0.02 1.38 16 4 C -0.11 -1.44 6.37 31.71 0.20 -1.23 16 5 C -0.12 -1.85 6.91 31.93 0.22 -1.63 16 6 C -0.14 -3.23 6.54 31.67 0.21 -3.02 16 7 C 0.15 4.06 2.90 45.71 0.13 4.19 16 8 H 0.06 1.91 7.09 -2.39 -0.02 1.89 16 9 N -0.72 -21.69 4.99 -454.35 -2.27 -23.95 16 10 C 0.71 29.89 8.49 179.06 1.52 31.41 16 11 O -0.65 -33.50 16.25 -3.99 -0.06 -33.56 16 12 N -0.64 -26.85 3.33 -829.78 -2.76 -29.61 16 13 C 0.11 3.53 6.15 86.73 0.53 4.06 16 14 C -0.11 -4.16 6.13 31.79 0.19 -3.96 16 15 C 0.23 11.38 0.87 -10.15 -0.01 11.37 16 16 O -0.59 -30.58 13.16 -148.98 -1.96 -32.54 16 17 C -0.56 -29.37 8.27 25.60 0.21 -29.16 16 18 H 0.07 3.52 7.79 -2.91 -0.02 3.50 16 19 C 0.03 1.38 5.29 84.65 0.45 1.83 16 20 N -0.92 -51.10 10.69 21.45 0.23 -50.87 16 21 Si 0.96 42.23 29.54 68.60 2.03 44.25 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 23 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 C 0.13 6.61 5.38 86.85 0.47 7.08 16 26 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 29 H 0.08 0.92 7.84 -2.39 -0.02 0.90 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.04 1.27 8.04 -2.39 -0.02 1.25 16 34 H 0.07 1.67 8.14 -2.38 -0.02 1.66 16 35 H 0.41 9.65 7.31 -92.71 -0.68 8.97 16 36 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 38 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.09 3.12 8.03 -2.39 -0.02 3.10 16 40 H 0.37 20.46 7.56 -74.06 -0.56 19.90 16 41 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 42 H 0.04 2.45 7.33 -2.39 -0.02 2.43 16 43 H 0.04 1.94 8.03 -2.39 -0.02 1.92 16 Total: -1.00 -68.19 341.04 -0.30 -68.49 By element: Atomic # 1 Polarization: 40.60 SS G_CDS: -0.23 Total: 40.37 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: 4.73 Total: 17.42 kcal Atomic # 7 Polarization: -99.64 SS G_CDS: -4.80 Total: -104.43 kcal Atomic # 8 Polarization: -64.07 SS G_CDS: -2.03 Total: -66.10 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -68.19 -0.30 -68.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591954540.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.037 kcal (2) G-P(sol) polarization free energy of solvation -68.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds