Wall clock time and date at job start Tue Mar 31 2020 06:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50706 * 119.99540 * 2 1 4 4 O 1.42903 * 109.46748 * 135.00368 * 3 2 1 5 5 C 1.42900 * 113.99516 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.46926 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.46960 * 65.00157 * 6 5 4 8 8 C 1.34781 * 120.00112 * 180.02562 * 7 6 5 9 9 O 1.21583 * 119.99782 * 4.97935 * 8 7 6 10 10 N 1.34777 * 120.00020 * 184.98394 * 8 7 6 11 11 C 1.46920 * 120.62966 * 354.77097 * 10 8 7 12 12 C 1.53195 * 108.89195 * 233.67449 * 11 10 8 13 13 C 1.53034 * 109.30987 * 305.29089 * 12 11 10 14 14 C 1.53041 * 109.53698 * 61.37073 * 13 12 11 15 15 H 1.08995 * 109.49951 * 58.61570 * 14 13 12 16 16 C 1.50702 * 109.49878 * 178.67958 * 14 13 12 17 17 H 1.07999 * 119.99826 * 359.97438 * 16 14 13 18 18 C 1.37869 * 120.00156 * 179.97438 * 16 14 13 19 19 N 1.31522 * 119.99896 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00164 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47263 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47142 * 120.00335 * 20 18 16 23 23 H 1.48503 * 109.47061 * 239.99978 * 20 18 16 24 24 C 1.47201 * 120.81180 * 174.90792 * 10 8 7 25 25 H 1.08005 * 120.00355 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99582 * 180.02562 * 1 2 3 27 27 H 1.07996 * 120.00209 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47131 * 15.00442 * 3 2 1 29 29 H 1.08994 * 109.46977 * 255.00393 * 3 2 1 30 30 H 1.09003 * 109.47061 * 60.00681 * 5 4 3 31 31 H 1.09001 * 109.47354 * 300.00122 * 5 4 3 32 32 H 1.09007 * 109.47220 * 305.00632 * 6 5 4 33 33 H 1.09002 * 109.47507 * 185.00365 * 6 5 4 34 34 H 0.96996 * 119.99935 * 0.02562 * 7 6 5 35 35 H 1.09008 * 109.58722 * 113.81679 * 11 10 8 36 36 H 1.09004 * 109.59155 * 353.53081 * 11 10 8 37 37 H 1.08998 * 109.49738 * 65.25124 * 12 11 10 38 38 H 1.08999 * 109.49589 * 185.34219 * 12 11 10 39 39 H 1.09001 * 109.45683 * 181.38095 * 13 12 11 40 40 H 1.08993 * 109.46741 * 301.34251 * 13 12 11 41 41 H 0.97003 * 119.99421 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.53945 * 6.53553 * 24 10 8 43 43 H 1.09004 * 109.67937 * 246.23280 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2414 0.9526 5 6 3.9083 2.4350 1.0320 6 6 5.0105 2.2543 2.0777 7 7 5.9390 1.2119 1.6334 8 6 6.9961 0.8794 2.4006 9 8 7.1296 1.3787 3.5010 10 7 7.9052 -0.0066 1.9477 11 6 7.6995 -0.7039 0.6710 12 6 7.8155 -2.2133 0.9060 13 6 9.1564 -2.5194 1.5770 14 6 9.2232 -1.8130 2.9330 15 1 8.3966 -2.1487 3.5591 16 6 10.5304 -2.1412 3.6073 17 1 11.2426 -2.7892 3.1181 18 6 10.8171 -1.6142 4.8486 19 7 9.9496 -0.8255 5.4445 20 14 12.4378 -2.0204 5.6841 21 1 13.2326 -2.9212 4.8112 22 1 13.1981 -0.7678 5.9250 23 1 12.1712 -2.6946 6.9801 24 6 9.1231 -0.2991 2.7211 25 1 -0.5401 0.9353 0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3854 2.1162 0.2661 29 1 2.4754 1.4869 -0.9926 30 1 3.2688 3.2697 1.3193 31 1 4.3586 2.6398 0.0607 32 1 4.5647 1.9625 3.0287 33 1 5.5506 3.1929 2.2024 34 1 5.7930 0.7610 0.7871 35 1 8.4574 -0.3862 -0.0452 36 1 6.7084 -0.4698 0.2823 37 1 7.0018 -2.5447 1.5509 38 1 7.7591 -2.7355 -0.0491 39 1 9.2521 -3.5953 1.7230 40 1 9.9691 -2.1655 0.9427 41 1 10.1516 -0.4545 6.3177 42 1 9.0706 0.2025 3.6874 43 1 9.9983 0.0520 2.1743 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595581964.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:06 Heat of formation + Delta-G solvation = -55.454279 kcal Electronic energy + Delta-G solvation = -22548.335040 eV Core-core repulsion = 19208.263152 eV Total energy + Delta-G solvation = -3340.071888 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.65289 -38.39338 -36.77516 -34.79190 -33.74667 -33.13919 -31.67915 -29.83808 -29.04398 -26.08270 -25.00089 -24.36791 -22.43496 -21.71716 -20.24517 -20.03322 -18.75705 -17.46483 -17.12847 -16.51174 -16.12482 -15.46633 -15.37126 -14.86119 -14.46732 -14.12772 -13.64969 -13.61323 -13.45972 -12.99756 -12.96955 -12.55598 -12.42271 -12.38731 -11.94870 -11.80898 -11.47210 -11.20094 -10.95039 -10.83830 -10.43434 -10.33805 -10.17721 -10.16726 -9.80783 -9.61570 -9.35181 -9.02964 -8.87137 -8.64973 -8.35909 -7.55476 -5.91993 -4.01314 1.84525 3.29196 3.35925 3.42620 3.45664 3.52296 3.95150 4.44874 4.52924 4.60489 4.79166 4.92227 4.98296 5.07001 5.12701 5.21302 5.36693 5.38817 5.54715 5.56983 5.67282 5.72362 5.94969 6.04550 6.23491 6.25605 6.32886 6.38061 6.65347 6.74072 6.86575 6.88013 6.97383 7.05874 7.12112 7.43071 7.59159 7.82274 8.00672 8.13824 8.47752 8.68813 9.02741 9.35544 9.63988 11.12836 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026225 B = 0.003513 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.422457 B = 7967.433242 C = 8455.846291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.150 4.150 3 C 0.087 3.913 4 O -0.379 6.379 5 C 0.051 3.949 6 C 0.143 3.857 7 N -0.753 5.753 8 C 0.700 3.300 9 O -0.584 6.584 10 N -0.623 5.623 11 C 0.116 3.884 12 C -0.133 4.133 13 C -0.109 4.109 14 C 0.039 3.961 15 H 0.029 0.971 16 C -0.520 4.520 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.878 5.878 20 Si 0.891 3.109 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.129 3.871 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.118 0.882 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.393 0.607 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.262 0.738 42 H 0.122 0.878 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.086 4.850 -14.354 21.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.168 4.168 3 C 0.011 3.989 4 O -0.298 6.298 5 C -0.026 4.026 6 C 0.018 3.982 7 N -0.413 5.413 8 C 0.401 3.599 9 O -0.462 6.462 10 N -0.360 5.360 11 C -0.008 4.008 12 C -0.172 4.172 13 C -0.147 4.147 14 C 0.020 3.980 15 H 0.047 0.953 16 C -0.559 4.559 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.515 5.515 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.211 1.211 24 C 0.009 3.991 25 H 0.115 0.885 26 H 0.122 0.878 27 H 0.136 0.864 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.229 0.771 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.140 0.860 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.948 5.198 -13.238 20.633 hybrid contribution 0.644 -0.235 -0.172 0.707 sum -14.304 4.963 -13.410 20.225 Atomic orbital electron populations 1.23829 0.95577 1.02219 1.00357 1.22778 0.95665 0.98361 0.99951 1.21542 0.89025 0.95852 0.92477 1.88021 1.44449 1.36971 1.60370 1.22826 0.92760 0.87806 0.99183 1.21096 0.88280 0.91690 0.97143 1.45230 1.28127 1.43052 1.24925 1.15943 0.79621 0.80438 0.83858 1.90923 1.77296 1.58349 1.19590 1.47824 1.23347 1.42300 1.22553 1.21470 0.99564 0.93286 0.86494 1.21941 1.00293 0.94837 1.00094 1.21608 0.94132 1.00138 0.98815 1.18987 0.97598 0.90627 0.90838 0.95302 1.21111 1.02604 1.29886 1.02311 0.92377 1.25069 0.96770 0.95034 0.97244 1.69928 1.34459 1.31622 1.15487 0.86555 0.83965 0.78118 0.79466 1.19845 1.21019 1.21061 1.22202 0.80383 0.99817 0.96706 0.88522 0.87793 0.86425 0.92850 0.92372 0.91720 0.92660 0.90929 0.90423 0.77138 0.92323 0.92160 0.92168 0.92411 0.93129 0.93251 0.92758 0.85999 0.94304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 14.31 29.01 0.42 -0.89 16 2 C -0.15 -1.28 9.89 -36.02 -0.36 -1.64 16 3 C 0.09 0.74 6.35 36.01 0.23 0.97 16 4 O -0.38 -4.30 10.27 -35.23 -0.36 -4.66 16 5 C 0.05 0.49 6.07 37.16 0.23 0.72 16 6 C 0.14 1.92 6.06 -4.04 -0.02 1.89 16 7 N -0.75 -12.00 5.41 -65.22 -0.35 -12.36 16 8 C 0.70 15.01 8.30 -86.91 -0.72 14.29 16 9 O -0.58 -15.27 15.79 5.29 0.08 -15.19 16 10 N -0.62 -13.12 2.98 -178.27 -0.53 -13.65 16 11 C 0.12 1.88 6.38 -3.71 -0.02 1.86 16 12 C -0.13 -2.23 6.08 -26.61 -0.16 -2.40 16 13 C -0.11 -2.23 5.11 -26.69 -0.14 -2.37 16 14 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16 15 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 16 C -0.52 -14.39 8.56 -34.44 -0.29 -14.69 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 19 N -0.88 -26.26 11.40 55.43 0.63 -25.63 16 20 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 24 C 0.13 3.25 5.42 -3.56 -0.02 3.23 16 25 H 0.10 0.58 7.90 -52.48 -0.41 0.17 16 26 H 0.10 0.64 8.06 -52.49 -0.42 0.21 16 27 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 28 H 0.05 0.38 7.86 -51.93 -0.41 -0.02 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.39 5.32 5.96 -40.82 -0.24 5.07 16 35 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 36 H 0.06 0.80 5.64 -51.93 -0.29 0.51 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.12 3.59 5.14 -51.93 -0.27 3.32 16 43 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 349.18 15.07 5.26 5.26 Total: -1.00 -33.57 349.18 -8.55 -42.11 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.09 Total: 4.11 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -1.17 Total: 3.40 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.25 Total: -51.63 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.28 Total: -19.85 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.57 -8.55 -42.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595581964.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.340 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds