Wall clock time and date at job start Tue Mar 31 2020 06:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.54985 * 2 1 4 4 C 1.54993 * 110.61871 * 236.95391 * 2 1 3 5 5 C 1.54818 * 102.09279 * 204.47377 * 4 2 1 6 6 H 1.08996 * 110.60124 * 139.61190 * 5 4 2 7 7 N 1.46506 * 110.48554 * 262.20472 * 5 4 2 8 8 C 1.34768 * 119.99748 * 201.21944 * 7 5 4 9 9 O 1.21595 * 120.00236 * 354.92664 * 8 7 5 10 10 N 1.34778 * 120.00185 * 174.92448 * 8 7 5 11 11 C 1.46926 * 120.62631 * 5.03195 * 10 8 7 12 12 C 1.53195 * 108.77525 * 233.58302 * 11 10 8 13 13 C 1.53038 * 109.31307 * 305.36941 * 12 11 10 14 14 C 1.53038 * 109.54172 * 61.36595 * 13 12 11 15 15 H 1.09004 * 109.49811 * 58.61230 * 14 13 12 16 16 C 1.50690 * 109.50051 * 178.68435 * 14 13 12 17 17 H 1.08003 * 120.00458 * 359.97438 * 16 14 13 18 18 C 1.37884 * 120.00222 * 180.02562 * 16 14 13 19 19 N 1.31509 * 119.99550 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99993 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46942 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46939 * 119.99852 * 20 18 16 23 23 H 1.48501 * 109.46780 * 239.99767 * 20 18 16 24 24 C 1.46923 * 120.63056 * 184.75502 * 10 8 7 25 25 C 1.54099 * 104.18718 * 20.87788 * 5 4 2 26 26 O 1.43748 * 107.29483 * 2.02988 * 25 5 4 27 27 H 1.09003 * 109.47164 * 298.56876 * 1 2 3 28 28 H 1.08998 * 109.47339 * 58.57515 * 1 2 3 29 29 H 1.09012 * 109.46724 * 178.57579 * 1 2 3 30 30 H 1.09009 * 110.90649 * 322.66638 * 4 2 1 31 31 H 1.08999 * 110.90916 * 86.27381 * 4 2 1 32 32 H 0.96994 * 119.99746 * 21.21654 * 7 5 4 33 33 H 1.08994 * 109.58664 * 353.37723 * 11 10 8 34 34 H 1.09004 * 109.58423 * 113.66078 * 11 10 8 35 35 H 1.09003 * 109.49346 * 65.32296 * 12 11 10 36 36 H 1.08992 * 109.49618 * 185.38245 * 12 11 10 37 37 H 1.09003 * 109.45636 * 181.38377 * 13 12 11 38 38 H 1.09003 * 109.45939 * 301.35394 * 13 12 11 39 39 H 0.97005 * 120.00073 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.58361 * 246.19880 * 24 10 8 41 41 H 1.08996 * 109.59226 * 6.62826 * 24 10 8 42 42 H 1.09003 * 109.88148 * 242.60905 * 25 5 4 43 43 H 1.08999 * 110.00652 * 121.52131 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0758 -0.7911 -1.2160 5 6 3.4795 -1.2177 -0.7217 6 1 3.6998 -2.2401 -1.0287 7 7 4.5025 -0.2996 -1.2287 8 6 5.7895 -0.6942 -1.2934 9 8 6.1168 -1.7766 -0.8463 10 7 6.7139 0.1108 -1.8539 11 6 6.3564 1.4646 -2.2988 12 6 6.7724 1.6279 -3.7642 13 6 8.2580 1.2904 -3.9092 14 6 8.4946 -0.1650 -3.4993 15 1 7.8901 -0.8220 -4.1247 16 6 9.9521 -0.5059 -3.6731 17 1 10.6414 0.2404 -4.0397 18 6 10.4058 -1.7711 -3.3651 19 7 9.5664 -2.6800 -2.9191 20 14 12.2124 -2.1939 -3.5813 21 1 12.9409 -1.0057 -4.0938 22 1 12.7856 -2.6003 -2.2730 23 1 12.3467 -3.3119 -4.5493 24 6 8.0994 -0.3466 -2.0258 25 6 3.3840 -1.1241 0.8134 26 8 2.0385 -0.7335 1.1349 27 1 -0.3633 0.4915 0.9026 28 1 -0.3634 0.5358 -0.8769 29 1 -0.3633 -1.0275 -0.0255 30 1 1.4549 -1.6627 -1.4234 31 1 2.1508 -0.1506 -2.0948 32 1 4.2535 0.5921 -1.5178 33 1 5.2798 1.6072 -2.2065 34 1 6.8764 2.2002 -1.6851 35 1 6.1837 0.9541 -4.3867 36 1 6.6003 2.6572 -4.0786 37 1 8.5624 1.4295 -4.9465 38 1 8.8442 1.9481 -3.2674 39 1 9.8856 -3.5699 -2.7021 40 1 8.7606 0.2442 -1.3919 41 1 8.1733 -1.3994 -1.7534 42 1 4.0854 -0.3763 1.1836 43 1 3.6054 -2.0932 1.2606 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595652494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:42 Heat of formation + Delta-G solvation = -77.467614 kcal Electronic energy + Delta-G solvation = -23210.095340 eV Core-core repulsion = 19869.068882 eV Total energy + Delta-G solvation = -3341.026457 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.26740 -39.06474 -36.79398 -34.36263 -33.29116 -32.23397 -31.79020 -30.02754 -29.30931 -26.15834 -25.07692 -24.45028 -21.91502 -21.70353 -21.23881 -20.13385 -18.88273 -17.59387 -16.83424 -16.18422 -15.74402 -15.57096 -15.11117 -14.72327 -14.44310 -14.06950 -13.75737 -13.61794 -13.11974 -12.93046 -12.67068 -12.60439 -12.48232 -12.19151 -12.05116 -11.88465 -11.61535 -11.36127 -11.02208 -10.95238 -10.82029 -10.49791 -10.39410 -10.23758 -9.88916 -9.77783 -9.48283 -9.11615 -8.95352 -8.83100 -8.42511 -7.66736 -5.98603 -4.07349 3.12013 3.31382 3.39354 3.42191 3.73486 3.79406 4.33053 4.42044 4.45927 4.54564 4.83683 4.99540 5.09424 5.22390 5.28303 5.31699 5.41564 5.45138 5.47623 5.58749 5.61880 5.77660 5.88449 5.91529 5.94129 5.98812 6.14013 6.29682 6.56771 6.62489 6.64741 6.79428 6.90688 6.97577 7.04933 7.31904 7.47526 7.74204 7.91955 8.05521 8.40773 8.54876 8.96362 9.21157 9.58294 11.06654 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029238 B = 0.004007 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.438397 B = 6986.720891 C = 7645.127954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 H 0.068 0.932 4 C -0.157 4.157 5 C 0.134 3.866 6 H 0.102 0.898 7 N -0.750 5.750 8 C 0.700 3.300 9 O -0.582 6.582 10 N -0.622 5.622 11 C 0.115 3.885 12 C -0.133 4.133 13 C -0.110 4.110 14 C 0.040 3.960 15 H 0.028 0.972 16 C -0.521 4.521 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.879 5.879 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.284 1.284 24 C 0.129 3.871 25 C 0.038 3.962 26 O -0.377 6.377 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.390 0.610 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.263 0.737 40 H 0.039 0.961 41 H 0.122 0.878 42 H 0.064 0.936 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.982 8.341 2.815 18.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.012 3.988 3 H 0.086 0.914 4 C -0.196 4.196 5 C 0.028 3.972 6 H 0.120 0.880 7 N -0.410 5.410 8 C 0.402 3.598 9 O -0.459 6.459 10 N -0.358 5.358 11 C -0.009 4.009 12 C -0.171 4.171 13 C -0.147 4.147 14 C 0.021 3.979 15 H 0.047 0.953 16 C -0.560 4.560 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.516 5.516 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C 0.009 3.991 25 C -0.041 4.041 26 O -0.296 6.296 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.227 0.773 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.140 0.860 42 H 0.082 0.918 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.821 7.278 3.390 17.741 hybrid contribution 1.031 0.286 -0.460 1.165 sum -14.789 7.564 2.930 16.868 Atomic orbital electron populations 1.21772 0.93152 1.02966 1.02388 1.23124 0.95167 0.95311 0.85191 0.91403 1.23480 0.95567 1.01677 0.98834 1.21987 0.86655 0.95636 0.92960 0.87993 1.45432 1.06382 1.17584 1.71571 1.15964 0.80299 0.84247 0.79284 1.90927 1.79620 1.22255 1.53062 1.47803 1.11733 1.13847 1.62421 1.21498 0.98260 0.85066 0.96057 1.21945 0.99480 1.00263 0.95456 1.21613 0.92604 1.00078 1.00453 1.19065 0.96592 0.90317 0.91969 0.95343 1.21113 0.93225 0.96928 1.44719 0.92341 1.25061 0.97632 0.96442 0.94914 1.69904 1.33987 1.04214 1.43536 0.86544 0.85367 0.78346 0.77793 1.19813 1.20955 1.21041 1.22283 0.74874 1.03173 0.98796 1.23716 0.83710 1.01344 0.95298 1.88886 1.28241 1.73631 1.38850 0.91874 0.91157 0.91711 0.89048 0.89537 0.77308 0.92282 0.92100 0.92192 0.92343 0.93056 0.93185 0.92717 0.94249 0.85997 0.91814 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.66 37.16 0.36 -0.75 16 2 C 0.07 0.67 3.98 -25.68 -0.10 0.57 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.16 -1.51 6.22 -24.72 -0.15 -1.66 16 5 C 0.13 1.78 3.31 -66.40 -0.22 1.56 16 6 H 0.10 1.55 7.74 -51.93 -0.40 1.15 16 7 N -0.75 -11.00 4.93 -57.18 -0.28 -11.28 16 8 C 0.70 14.11 8.29 -86.93 -0.72 13.39 16 9 O -0.58 -14.37 15.54 5.28 0.08 -14.29 16 10 N -0.62 -12.40 2.97 -178.23 -0.53 -12.93 16 11 C 0.12 1.74 6.43 -3.71 -0.02 1.72 16 12 C -0.13 -2.08 6.08 -26.61 -0.16 -2.24 16 13 C -0.11 -2.15 5.10 -26.69 -0.14 -2.29 16 14 C 0.04 0.98 2.26 -91.43 -0.21 0.77 16 15 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 16 C -0.52 -14.09 8.56 -34.44 -0.29 -14.38 16 17 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 19 N -0.88 -25.71 11.41 55.43 0.63 -25.07 16 20 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.13 3.14 5.41 -3.48 -0.02 3.12 16 25 C 0.04 0.51 7.50 37.73 0.28 0.79 16 26 O -0.38 -4.85 11.22 -35.23 -0.40 -5.24 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 30 H 0.09 0.80 8.05 -51.92 -0.42 0.39 16 31 H 0.09 0.72 7.96 -51.93 -0.41 0.30 16 32 H 0.39 4.62 5.98 -40.82 -0.24 4.38 16 33 H 0.06 0.69 5.57 -51.93 -0.29 0.40 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.12 3.49 5.18 -51.93 -0.27 3.22 16 42 H 0.06 0.92 7.93 -51.93 -0.41 0.51 16 43 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 337.18 15.07 5.08 5.08 Total: -1.00 -32.00 337.18 -8.98 -40.98 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -7.06 Total: 4.26 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -1.49 Total: 2.24 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: -0.18 Total: -49.28 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.31 Total: -19.53 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.00 -8.98 -40.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595652494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.490 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds