Wall clock time and date at job start Tue Mar 31 2020 06:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.54914 * 2 1 4 4 C 1.54991 * 110.62311 * 237.12094 * 2 1 3 5 5 C 1.54807 * 102.09525 * 204.47705 * 4 2 1 6 6 H 1.08997 * 110.59965 * 139.60947 * 5 4 2 7 7 N 1.46503 * 110.48577 * 262.20222 * 5 4 2 8 8 C 1.34775 * 119.99850 * 201.22224 * 7 5 4 9 9 O 1.21586 * 120.00108 * 355.01106 * 8 7 5 10 10 N 1.34777 * 119.99935 * 175.01697 * 8 7 5 11 11 C 1.46931 * 120.63335 * 5.22397 * 10 8 7 12 12 C 1.53190 * 108.77844 * 126.36491 * 11 10 8 13 13 C 1.53046 * 109.30567 * 54.63863 * 12 11 10 14 14 C 1.53036 * 109.53829 * 298.63010 * 13 12 11 15 15 H 1.08998 * 109.50104 * 301.41401 * 14 13 12 16 16 C 1.50704 * 109.49573 * 181.35481 * 14 13 12 17 17 H 1.07999 * 119.99881 * 359.97438 * 16 14 13 18 18 C 1.37880 * 120.00097 * 180.02562 * 16 14 13 19 19 N 1.31517 * 119.99661 * 359.97438 * 18 16 14 20 20 Si 1.86788 * 120.00073 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.47375 * 90.00123 * 20 18 16 22 22 H 1.48507 * 109.47479 * 209.99868 * 20 18 16 23 23 H 1.48501 * 109.47399 * 329.99849 * 20 18 16 24 24 C 1.46923 * 120.63063 * 184.94478 * 10 8 7 25 25 C 1.54096 * 104.18596 * 20.87466 * 5 4 2 26 26 O 1.43745 * 107.42395 * 1.96105 * 25 5 4 27 27 H 1.08992 * 109.46771 * 182.87643 * 1 2 3 28 28 H 1.08996 * 109.47288 * 302.88105 * 1 2 3 29 29 H 1.08998 * 109.46791 * 62.87921 * 1 2 3 30 30 H 1.09001 * 110.90554 * 86.27344 * 4 2 1 31 31 H 1.09000 * 110.90534 * 322.67607 * 4 2 1 32 32 H 0.97001 * 119.99834 * 21.21907 * 7 5 4 33 33 H 1.08996 * 109.58629 * 246.15943 * 11 10 8 34 34 H 1.09007 * 109.58181 * 6.43848 * 11 10 8 35 35 H 1.08999 * 109.49734 * 174.58453 * 12 11 10 36 36 H 1.08995 * 109.49773 * 294.65559 * 12 11 10 37 37 H 1.08993 * 109.46146 * 58.65764 * 13 12 11 38 38 H 1.09003 * 109.45371 * 178.62403 * 13 12 11 39 39 H 0.96996 * 119.99890 * 180.02562 * 19 18 16 40 40 H 1.09004 * 109.58448 * 353.41582 * 24 10 8 41 41 H 1.09003 * 109.58787 * 113.84610 * 24 10 8 42 42 H 1.09005 * 109.87467 * 121.45957 * 25 5 4 43 43 H 1.09003 * 109.88116 * 242.45247 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0759 -0.7875 -1.2182 5 6 3.4796 -1.2156 -0.7252 6 1 3.6998 -2.2371 -1.0351 7 7 4.5026 -0.2961 -1.2295 8 6 5.7896 -0.6906 -1.2953 9 8 6.1166 -1.7748 -0.8528 10 7 6.7143 0.1169 -1.8517 11 6 6.3583 1.4743 -2.2870 12 6 7.3246 2.4698 -1.6374 13 6 8.7639 2.0630 -1.9617 14 6 9.0445 0.6726 -1.3873 15 1 8.8836 0.6850 -0.3093 16 6 10.4720 0.2869 -1.6783 17 1 11.1151 0.9652 -2.2193 18 6 10.9567 -0.9325 -1.2548 19 7 10.1734 -1.7587 -0.5964 20 14 12.7258 -1.4108 -1.6161 21 1 13.5984 -0.9574 -0.5033 22 1 12.8220 -2.8867 -1.7507 23 1 13.1636 -0.7689 -2.8816 24 6 8.0990 -0.3413 -2.0289 25 6 3.3839 -1.1265 0.8102 26 8 2.0396 -0.7352 1.1358 27 1 -0.3632 -1.0263 0.0516 28 1 -0.3634 0.5579 0.8630 29 1 -0.3633 0.4685 -0.9147 30 1 2.1510 -0.1444 -2.0951 31 1 1.4551 -1.6584 -1.4283 32 1 4.2536 0.5966 -1.5159 33 1 6.4377 1.5427 -3.3719 34 1 5.3369 1.7002 -1.9804 35 1 7.1327 3.4698 -2.0265 36 1 7.1794 2.4657 -0.5572 37 1 8.9010 2.0438 -3.0428 38 1 9.4529 2.7836 -1.5211 39 1 10.5145 -2.6163 -0.2982 40 1 8.2267 -1.3121 -1.5498 41 1 8.3233 -0.4239 -3.0923 42 1 3.6046 -2.0981 1.2523 43 1 4.0873 -0.3817 1.1828 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595652495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:46 Heat of formation + Delta-G solvation = -77.261188 kcal Electronic energy + Delta-G solvation = -23237.844891 eV Core-core repulsion = 19896.827384 eV Total energy + Delta-G solvation = -3341.017506 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.25543 -39.05223 -36.80478 -34.35590 -33.29394 -32.22919 -31.78804 -30.03138 -29.31325 -26.14355 -25.06656 -24.45528 -21.90640 -21.70658 -21.22720 -20.12144 -18.89884 -17.56254 -16.83124 -16.18534 -15.72252 -15.57171 -15.07883 -14.65821 -14.49688 -14.10429 -13.73231 -13.49658 -13.20745 -12.87435 -12.75671 -12.59242 -12.47174 -12.26081 -11.92718 -11.89907 -11.64886 -11.34995 -11.00156 -10.93926 -10.82608 -10.49415 -10.41023 -10.22387 -9.87946 -9.75496 -9.46638 -9.09267 -8.94815 -8.84215 -8.40368 -7.66695 -5.96824 -4.06245 3.12207 3.32697 3.39660 3.41716 3.72463 3.81504 4.32726 4.42049 4.46689 4.54444 4.83929 5.00463 5.09608 5.23156 5.28202 5.32831 5.41338 5.45283 5.47952 5.59652 5.60500 5.77840 5.88680 5.91706 5.98085 5.98986 6.14876 6.30456 6.58098 6.63337 6.66044 6.79771 6.91407 6.98926 7.03239 7.34732 7.48734 7.74994 7.93676 8.07483 8.42091 8.55126 8.97421 9.21672 9.59316 11.08039 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028750 B = 0.004047 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.672090 B = 6917.185547 C = 7527.364241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.069 3.931 3 H 0.068 0.932 4 C -0.157 4.157 5 C 0.135 3.865 6 H 0.101 0.899 7 N -0.750 5.750 8 C 0.699 3.301 9 O -0.579 6.579 10 N -0.622 5.622 11 C 0.116 3.884 12 C -0.134 4.134 13 C -0.109 4.109 14 C 0.039 3.961 15 H 0.028 0.972 16 C -0.522 4.522 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.878 5.878 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.128 3.872 25 C 0.036 3.964 26 O -0.376 6.376 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.390 0.610 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.263 0.737 40 H 0.124 0.876 41 H 0.039 0.961 42 H 0.092 0.908 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.441 6.080 -2.757 18.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.011 3.989 3 H 0.086 0.914 4 C -0.195 4.195 5 C 0.028 3.972 6 H 0.119 0.881 7 N -0.410 5.410 8 C 0.401 3.599 9 O -0.456 6.456 10 N -0.358 5.358 11 C -0.009 4.009 12 C -0.172 4.172 13 C -0.147 4.147 14 C 0.020 3.980 15 H 0.046 0.954 16 C -0.561 4.561 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.515 5.515 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C 0.008 3.992 25 C -0.042 4.042 26 O -0.295 6.295 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.227 0.773 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.142 0.858 41 H 0.057 0.943 42 H 0.110 0.890 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.279 5.010 -2.174 18.122 hybrid contribution 1.030 0.299 -0.483 1.177 sum -16.248 5.309 -2.657 17.299 Atomic orbital electron populations 1.21766 0.93172 1.03009 1.02321 1.23153 0.95142 0.95374 0.85186 0.91372 1.23467 0.95579 1.01665 0.98822 1.21977 0.86609 0.95465 0.93115 0.88074 1.45451 1.06398 1.17395 1.71769 1.15975 0.80285 0.84474 0.79174 1.90938 1.79522 1.22435 1.52703 1.47798 1.11585 1.13216 1.63205 1.21491 0.97130 0.83464 0.98771 1.21947 0.97497 0.97104 1.00648 1.21611 0.93026 0.99897 1.00183 1.18907 0.94175 0.88889 0.96064 0.95370 1.21067 0.95653 1.02233 1.37099 0.92402 1.25062 0.97573 0.96606 0.94816 1.69899 1.35214 1.09306 1.37120 0.86601 0.85140 0.77663 0.78626 1.20713 1.21187 1.19941 1.22109 0.74591 1.03483 0.99035 1.23722 0.83756 1.01517 0.95206 1.88933 1.28323 1.73549 1.38740 0.91683 0.91902 0.91179 0.89586 0.89097 0.77328 0.92134 0.92286 0.92319 0.92201 0.93199 0.93056 0.92660 0.85843 0.94256 0.88990 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.66 37.16 0.36 -0.75 16 2 C 0.07 0.68 3.97 -25.68 -0.10 0.57 16 3 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.16 -1.46 6.22 -24.73 -0.15 -1.62 16 5 C 0.14 1.77 3.31 -66.40 -0.22 1.55 16 6 H 0.10 1.48 7.74 -51.93 -0.40 1.08 16 7 N -0.75 -10.93 4.92 -57.18 -0.28 -11.22 16 8 C 0.70 14.07 8.29 -86.92 -0.72 13.35 16 9 O -0.58 -14.36 15.52 5.29 0.08 -14.28 16 10 N -0.62 -12.40 2.98 -178.76 -0.53 -12.93 16 11 C 0.12 1.75 6.39 -3.71 -0.02 1.72 16 12 C -0.13 -2.12 6.08 -26.61 -0.16 -2.28 16 13 C -0.11 -2.16 5.11 -26.69 -0.14 -2.30 16 14 C 0.04 0.96 2.24 -91.87 -0.21 0.76 16 15 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 16 C -0.52 -14.17 8.57 -34.44 -0.29 -14.46 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 19 N -0.88 -25.80 11.39 55.43 0.63 -25.17 16 20 Si 0.89 21.33 29.54 -169.99 -5.02 16.30 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 C 0.13 3.12 5.39 -3.93 -0.02 3.10 16 25 C 0.04 0.51 7.49 37.73 0.28 0.79 16 26 O -0.38 -4.97 11.24 -35.23 -0.40 -5.37 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.67 7.96 -51.93 -0.41 0.26 16 31 H 0.09 0.76 8.06 -51.93 -0.42 0.34 16 32 H 0.39 4.59 6.02 -40.82 -0.25 4.34 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.69 5.64 -51.92 -0.29 0.40 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.12 3.54 5.10 -51.93 -0.27 3.27 16 41 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.07 1.01 7.93 -51.93 -0.41 0.60 16 LS Contribution 337.13 15.07 5.08 5.08 Total: -1.00 -32.16 337.13 -8.99 -41.16 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -7.06 Total: 4.34 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -1.49 Total: 2.08 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -0.18 Total: -49.32 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.31 Total: -19.65 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.16 -8.99 -41.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595652495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.106 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds