Wall clock time and date at job start Tue Mar 31 2020 06:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.27593 * 2 1 4 4 C 1.55208 * 110.37356 * 237.98860 * 2 1 3 5 5 C 1.55302 * 100.82712 * 204.80086 * 4 2 1 6 6 H 1.08998 * 110.84766 * 275.59176 * 5 4 2 7 7 N 1.46501 * 110.84794 * 152.18035 * 5 4 2 8 8 C 1.34775 * 120.00288 * 157.77112 * 7 5 4 9 9 O 1.21590 * 119.99725 * 5.07193 * 8 7 5 10 10 N 1.34772 * 120.00150 * 185.07636 * 8 7 5 11 11 C 1.46932 * 120.63286 * 354.93777 * 10 8 7 12 12 C 1.53191 * 108.77685 * 126.41342 * 11 10 8 13 13 C 1.53034 * 109.31099 * 54.63613 * 12 11 10 14 14 C 1.53044 * 109.54212 * 298.63339 * 13 12 11 15 15 H 1.09000 * 109.52298 * 301.40192 * 14 13 12 16 16 C 1.50697 * 109.49998 * 181.31937 * 14 13 12 17 17 H 1.07998 * 120.00130 * 0.43734 * 16 14 13 18 18 C 1.37875 * 119.99792 * 180.16384 * 16 14 13 19 19 N 1.31507 * 120.00465 * 359.97438 * 18 16 14 20 20 Si 1.86804 * 119.99759 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46898 * 60.00026 * 20 18 16 22 22 H 1.48498 * 109.46992 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47242 * 300.00055 * 20 18 16 24 24 C 1.46931 * 120.63222 * 174.96049 * 10 8 7 25 25 C 1.54378 * 102.43744 * 33.88678 * 5 4 2 26 26 O 1.43230 * 107.59205 * 338.74556 * 25 5 4 27 27 H 1.08999 * 109.47332 * 299.36155 * 1 2 3 28 28 H 1.08997 * 109.47074 * 59.36335 * 1 2 3 29 29 H 1.09005 * 109.47119 * 179.36162 * 1 2 3 30 30 H 1.09003 * 111.30341 * 86.86224 * 4 2 1 31 31 H 1.09002 * 111.05068 * 322.63165 * 4 2 1 32 32 H 0.97000 * 119.99599 * 337.76965 * 7 5 4 33 33 H 1.09002 * 109.58644 * 246.20529 * 11 10 8 34 34 H 1.09003 * 109.58118 * 6.48337 * 11 10 8 35 35 H 1.08992 * 109.49489 * 174.59017 * 12 11 10 36 36 H 1.09005 * 109.49737 * 294.68409 * 12 11 10 37 37 H 1.09006 * 109.46058 * 178.61319 * 13 12 11 38 38 H 1.09003 * 109.46580 * 58.65500 * 13 12 11 39 39 H 0.97000 * 120.00486 * 180.02562 * 19 18 16 40 40 H 1.08993 * 109.58681 * 113.79551 * 24 10 8 41 41 H 1.08999 * 109.69938 * 353.44109 * 24 10 8 42 42 H 1.09002 * 109.82795 * 98.26220 * 25 5 4 43 43 H 1.09002 * 109.83073 * 219.13611 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0703 -0.7713 -1.2337 5 6 3.4700 -1.2033 -0.7177 6 1 4.2001 -0.4074 -0.8645 7 7 3.9091 -2.4378 -1.3730 8 6 5.2207 -2.7430 -1.4257 9 8 6.0314 -2.0427 -0.8505 10 7 5.6338 -3.8243 -2.1160 11 6 4.6600 -4.7417 -2.7234 12 6 4.9939 -4.9016 -4.2099 13 6 6.4512 -5.3451 -4.3564 14 6 7.3735 -4.2756 -3.7666 15 1 7.2082 -3.3285 -4.2803 16 6 8.8095 -4.6982 -3.9404 17 1 9.0420 -5.6326 -4.4295 18 6 9.8267 -3.8893 -3.4800 19 7 9.5438 -2.7488 -2.8896 20 14 11.6067 -4.4136 -3.6948 21 1 11.9039 -4.5758 -5.1407 22 1 12.5009 -3.3769 -3.1194 23 1 11.8304 -5.7044 -2.9956 24 6 7.0666 -4.1085 -2.2751 25 6 3.2112 -1.4412 0.7855 26 8 2.0286 -0.7157 1.1414 27 1 -0.3634 0.5039 0.8956 28 1 -0.3633 0.5237 -0.8842 29 1 -0.3633 -1.0276 -0.0115 30 1 2.1561 -0.1185 -2.1025 31 1 1.4487 -1.6386 -1.4563 32 1 3.2557 -3.0355 -1.7690 33 1 4.7150 -5.7121 -2.2300 34 1 3.6555 -4.3327 -2.6143 35 1 4.3389 -5.6529 -4.6510 36 1 4.8505 -3.9488 -4.7196 37 1 6.6843 -5.4835 -5.4122 38 1 6.5999 -6.2855 -3.8256 39 1 10.2595 -2.1795 -2.5660 40 1 7.3179 -5.0272 -1.7452 41 1 7.6520 -3.2822 -1.8719 42 1 3.0624 -2.5049 0.9712 43 1 4.0582 -1.0792 1.3684 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595652496.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:51 Heat of formation + Delta-G solvation = -78.145848 kcal Electronic energy + Delta-G solvation = -23122.830626 eV Core-core repulsion = 19781.774758 eV Total energy + Delta-G solvation = -3341.055868 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.21283 -39.11555 -36.82851 -34.42924 -33.30619 -32.26785 -31.79285 -30.04136 -29.33076 -26.13360 -25.07764 -24.47582 -21.90555 -21.55446 -21.46957 -19.95774 -18.85628 -17.63081 -16.98268 -16.34693 -16.04090 -15.37764 -14.74486 -14.72624 -14.39691 -13.94038 -13.75937 -13.57944 -13.45830 -12.93539 -12.73167 -12.64720 -12.58443 -12.26439 -11.99290 -11.90953 -11.53423 -11.33177 -11.04811 -10.95726 -10.88452 -10.52770 -10.41328 -10.23046 -9.89126 -9.59615 -9.50576 -9.11429 -8.97019 -8.83298 -8.41776 -7.67559 -5.98359 -4.07490 3.06316 3.33120 3.38903 3.40044 3.70953 3.76902 4.28407 4.39066 4.45474 4.62005 4.81667 4.97324 5.11391 5.14620 5.24888 5.31615 5.42515 5.46784 5.50040 5.58431 5.59256 5.75831 5.87944 5.90950 5.95571 6.01146 6.13984 6.29715 6.56982 6.64117 6.70680 6.79460 6.94084 6.97519 7.04846 7.32246 7.46896 7.73698 7.92107 8.05761 8.40728 8.53870 8.95732 9.19873 9.58120 11.06731 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028113 B = 0.003942 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.741243 B = 7100.500172 C = 7768.388480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.077 3.923 3 H 0.074 0.926 4 C -0.159 4.159 5 C 0.136 3.864 6 H 0.103 0.897 7 N -0.747 5.747 8 C 0.701 3.299 9 O -0.581 6.581 10 N -0.621 5.621 11 C 0.115 3.885 12 C -0.133 4.133 13 C -0.110 4.110 14 C 0.040 3.960 15 H 0.028 0.972 16 C -0.523 4.523 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.880 5.880 20 Si 0.893 3.107 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.129 3.871 25 C 0.040 3.960 26 O -0.381 6.381 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.392 0.608 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.264 0.736 40 H 0.039 0.961 41 H 0.123 0.877 42 H 0.071 0.929 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.826 1.452 2.142 18.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.019 3.981 3 H 0.091 0.909 4 C -0.197 4.197 5 C 0.029 3.971 6 H 0.121 0.879 7 N -0.406 5.406 8 C 0.402 3.598 9 O -0.458 6.458 10 N -0.357 5.357 11 C -0.009 4.009 12 C -0.172 4.172 13 C -0.148 4.148 14 C 0.021 3.979 15 H 0.046 0.954 16 C -0.561 4.561 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C 0.008 3.992 25 C -0.039 4.039 26 O -0.300 6.300 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.229 0.771 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.141 0.859 42 H 0.089 0.911 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.179 2.134 2.850 17.544 hybrid contribution 0.756 -0.642 -0.557 1.137 sum -16.423 1.492 2.294 16.650 Atomic orbital electron populations 1.21877 0.93635 1.02780 1.02401 1.22922 0.94878 0.95746 0.84560 0.90861 1.23623 0.95659 1.01442 0.99006 1.22191 0.95812 0.87933 0.91141 0.87879 1.45255 1.06900 1.24801 1.63680 1.15963 0.81872 0.81852 0.80103 1.90928 1.52575 1.52581 1.49745 1.47796 1.09295 1.24414 1.54223 1.21507 0.91105 0.93800 0.94499 1.21944 0.99014 1.01107 0.95085 1.21615 0.92759 0.99931 1.00456 1.18980 0.93549 0.94091 0.91295 0.95403 1.21034 0.90165 1.05949 1.38977 0.92427 1.25052 0.99169 0.94817 0.94960 1.69873 1.32639 1.10904 1.38261 0.86652 0.84704 0.78272 0.78334 1.20327 1.21253 1.20239 1.22199 0.75061 1.02168 0.99745 1.23623 0.87585 0.96888 0.95754 1.88423 1.42802 1.65067 1.33741 0.91819 0.91220 0.91966 0.89143 0.89903 0.77095 0.92068 0.92219 0.92323 0.92191 0.93054 0.93169 0.92585 0.94241 0.85923 0.91050 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.63 37.16 0.36 -0.79 16 2 C 0.08 0.76 4.07 -25.56 -0.10 0.65 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.16 -1.52 6.23 -24.34 -0.15 -1.67 16 5 C 0.14 1.81 3.28 -65.99 -0.22 1.59 16 6 H 0.10 1.58 7.70 -51.93 -0.40 1.18 16 7 N -0.75 -10.97 5.04 -56.78 -0.29 -11.26 16 8 C 0.70 14.13 8.29 -86.92 -0.72 13.41 16 9 O -0.58 -14.39 15.52 5.29 0.08 -14.31 16 10 N -0.62 -12.39 2.97 -178.49 -0.53 -12.92 16 11 C 0.12 1.74 6.43 -3.71 -0.02 1.71 16 12 C -0.13 -2.08 6.08 -26.61 -0.16 -2.24 16 13 C -0.11 -2.15 5.10 -26.69 -0.14 -2.29 16 14 C 0.04 0.98 2.25 -91.65 -0.21 0.78 16 15 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 16 C -0.52 -14.12 8.56 -34.44 -0.29 -14.42 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 19 N -0.88 -25.70 11.39 55.43 0.63 -25.07 16 20 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C 0.13 3.13 5.38 -3.71 -0.02 3.11 16 25 C 0.04 0.53 7.56 37.88 0.29 0.82 16 26 O -0.38 -4.93 11.04 -35.23 -0.39 -5.32 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.70 7.91 -51.93 -0.41 0.29 16 32 H 0.39 4.64 5.99 -40.82 -0.24 4.40 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.70 5.56 -51.93 -0.29 0.41 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.12 3.51 5.15 -51.93 -0.27 3.24 16 42 H 0.07 0.96 8.02 -51.93 -0.42 0.54 16 43 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 337.24 15.07 5.08 5.08 Total: -1.00 -31.91 337.24 -8.98 -40.89 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -7.07 Total: 4.34 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -1.49 Total: 2.31 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: -0.19 Total: -49.25 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.31 Total: -19.63 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.91 -8.98 -40.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595652496.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.253 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds