Wall clock time and date at job start Tue Mar 31 2020 06:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.82240 * 2 1 4 4 C 1.54380 * 109.82774 * 239.11599 * 2 1 3 5 5 C 1.55312 * 102.24937 * 219.12922 * 4 2 1 6 6 H 1.09001 * 111.12358 * 276.17130 * 5 4 2 7 7 N 1.46502 * 111.12326 * 152.05457 * 5 4 2 8 8 C 1.34775 * 120.00107 * 154.99892 * 7 5 4 9 9 O 1.21593 * 119.99941 * 4.98750 * 8 7 5 10 10 N 1.34777 * 120.00247 * 184.98839 * 8 7 5 11 11 C 1.46919 * 120.63054 * 354.77299 * 10 8 7 12 12 C 1.53188 * 108.77672 * 233.62893 * 11 10 8 13 13 C 1.53036 * 109.31502 * 305.36431 * 12 11 10 14 14 C 1.53050 * 109.52377 * 61.37008 * 13 12 11 15 15 H 1.08998 * 109.49604 * 58.58652 * 14 13 12 16 16 C 1.50700 * 109.49661 * 178.67720 * 14 13 12 17 17 H 1.08011 * 119.99870 * 359.97438 * 16 14 13 18 18 C 1.37873 * 120.00071 * 180.02562 * 16 14 13 19 19 N 1.31512 * 119.99889 * 359.97438 * 18 16 14 20 20 Si 1.86808 * 120.00009 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46938 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47076 * 119.99919 * 20 18 16 23 23 H 1.48499 * 109.47020 * 239.99983 * 20 18 16 24 24 C 1.46930 * 120.62923 * 174.79601 * 10 8 7 25 25 C 1.54941 * 100.94237 * 34.13816 * 5 4 2 26 26 O 1.43234 * 109.82985 * 120.98203 * 2 1 3 27 27 H 1.09003 * 109.46770 * 180.87995 * 1 2 3 28 28 H 1.09000 * 109.46987 * 300.88509 * 1 2 3 29 29 H 1.09005 * 109.46965 * 60.88411 * 1 2 3 30 30 H 1.09004 * 110.84813 * 100.94076 * 4 2 1 31 31 H 1.08995 * 110.85283 * 337.31911 * 4 2 1 32 32 H 0.96999 * 120.00041 * 335.00570 * 7 5 4 33 33 H 1.09006 * 109.58970 * 113.84000 * 11 10 8 34 34 H 1.09004 * 109.58679 * 353.41965 * 11 10 8 35 35 H 1.09004 * 109.50101 * 185.41214 * 12 11 10 36 36 H 1.09001 * 109.52543 * 65.33167 * 12 11 10 37 37 H 1.09000 * 109.46430 * 181.38033 * 13 12 11 38 38 H 1.09000 * 109.46278 * 301.35762 * 13 12 11 39 39 H 0.97003 * 119.99670 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.58242 * 246.15496 * 24 10 8 41 41 H 1.08994 * 109.58556 * 6.43500 * 24 10 8 42 42 H 1.08997 * 110.31328 * 82.46984 * 25 5 4 43 43 H 1.09002 * 110.30623 * 204.64351 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 6 2.0537 -0.7455 -1.2464 5 6 3.2730 -1.5216 -0.6780 6 1 4.1622 -0.8917 -0.6521 7 7 3.5206 -2.7477 -1.4407 8 6 4.7552 -3.2875 -1.4666 9 8 5.6420 -2.8099 -0.7854 10 7 5.0070 -4.3567 -2.2476 11 6 3.9221 -5.0150 -2.9879 12 6 3.9307 -6.5092 -2.6502 13 6 5.3213 -7.0835 -2.9302 14 6 6.3525 -6.3819 -2.0433 15 1 6.0850 -6.5195 -0.9957 16 6 7.7167 -6.9702 -2.2961 17 1 7.8367 -7.7655 -3.0170 18 6 8.8115 -6.4940 -1.6064 19 7 8.6653 -5.5260 -0.7283 20 14 10.5026 -7.2228 -1.9203 21 1 10.3989 -8.2893 -2.9484 22 1 11.4186 -6.1582 -2.4027 23 1 11.0346 -7.7999 -0.6597 24 6 6.3717 -4.8863 -2.3743 25 6 2.7747 -1.8452 0.7530 26 8 2.0160 -0.6936 1.1552 27 1 -0.3633 -1.0276 0.0158 28 1 -0.3633 0.5275 0.8819 29 1 -0.3633 0.5001 -0.8979 30 1 2.3672 -0.0408 -2.0166 31 1 1.3012 -1.4335 -1.6316 32 1 2.7959 -3.1709 -1.9271 33 1 4.0768 -4.8815 -4.0586 34 1 2.9655 -4.5803 -2.6978 35 1 3.1934 -7.0255 -3.2651 36 1 3.6859 -6.6461 -1.5969 37 1 5.3234 -8.1518 -2.7140 38 1 5.5756 -6.9246 -3.9782 39 1 9.4356 -5.1907 -0.2433 40 1 6.7261 -4.7423 -3.3950 41 1 7.0318 -4.3649 -1.6813 42 1 2.1401 -2.7312 0.7413 43 1 3.6210 -1.9937 1.4237 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595652497.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:54 Heat of formation + Delta-G solvation = -78.525893 kcal Electronic energy + Delta-G solvation = -23141.048572 eV Core-core repulsion = 19799.976224 eV Total energy + Delta-G solvation = -3341.072348 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.22047 -39.15215 -36.82740 -34.43153 -33.29808 -32.23384 -31.78951 -30.02839 -29.32290 -26.17934 -25.07200 -24.47863 -21.91593 -21.57790 -21.35795 -20.00362 -18.93433 -17.61821 -16.89177 -16.39932 -16.10432 -15.23298 -14.92654 -14.51228 -14.34423 -13.94504 -13.75194 -13.65005 -13.45098 -12.93526 -12.76463 -12.75671 -12.57662 -12.24730 -11.99056 -11.92909 -11.52843 -11.31165 -11.02039 -10.95024 -10.86537 -10.49661 -10.40250 -10.23283 -9.88518 -9.64356 -9.48974 -9.09966 -8.94184 -8.83310 -8.41439 -7.67495 -5.97083 -4.06401 3.03722 3.31681 3.39831 3.42641 3.70229 3.84498 4.26822 4.40534 4.46588 4.62173 4.78214 4.97208 5.11509 5.12915 5.24048 5.32631 5.40412 5.47143 5.50470 5.56324 5.59015 5.75949 5.88614 5.92565 5.95731 6.02185 6.14517 6.30054 6.57302 6.65292 6.67393 6.79205 6.95776 6.98460 7.02683 7.33281 7.47468 7.74738 7.92990 8.06532 8.41709 8.53473 8.97440 9.19899 9.59276 11.07833 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028053 B = 0.003970 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.879185 B = 7051.964680 C = 7722.252928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.077 3.923 3 H 0.082 0.918 4 C -0.160 4.160 5 C 0.136 3.864 6 H 0.107 0.893 7 N -0.746 5.746 8 C 0.700 3.300 9 O -0.579 6.579 10 N -0.621 5.621 11 C 0.116 3.884 12 C -0.134 4.134 13 C -0.110 4.110 14 C 0.039 3.961 15 H 0.029 0.971 16 C -0.521 4.521 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.878 5.878 20 Si 0.891 3.109 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.129 3.871 25 C 0.039 3.961 26 O -0.377 6.377 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.392 0.608 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.263 0.737 40 H 0.039 0.961 41 H 0.123 0.877 42 H 0.061 0.939 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.570 7.777 -3.368 18.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.019 3.981 3 H 0.100 0.900 4 C -0.198 4.198 5 C 0.028 3.972 6 H 0.125 0.875 7 N -0.405 5.405 8 C 0.401 3.599 9 O -0.455 6.455 10 N -0.358 5.358 11 C -0.009 4.009 12 C -0.172 4.172 13 C -0.147 4.147 14 C 0.020 3.980 15 H 0.047 0.953 16 C -0.560 4.560 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.515 5.515 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C 0.008 3.992 25 C -0.039 4.039 26 O -0.296 6.296 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.228 0.772 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.141 0.859 42 H 0.079 0.921 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.799 8.308 -2.544 18.031 hybrid contribution 0.505 -0.728 -0.637 1.091 sum -15.294 7.580 -3.181 17.363 Atomic orbital electron populations 1.22146 0.94920 1.02589 1.02243 1.22638 0.94324 0.96465 0.84684 0.90017 1.23452 0.97670 1.00148 0.98532 1.22334 0.98459 0.86180 0.90180 0.87539 1.45185 1.10764 1.28460 1.56124 1.15975 0.82274 0.80901 0.80744 1.90946 1.44758 1.64287 1.45528 1.47798 1.10963 1.29601 1.47391 1.21497 0.89384 0.93784 0.96198 1.21949 0.99231 0.94730 1.01296 1.21615 0.93431 0.99397 1.00293 1.18985 0.93384 0.90483 0.95154 0.95305 1.21107 0.91820 1.19601 1.23480 0.92355 1.25064 0.99167 0.94974 0.94860 1.69913 1.30438 1.26239 1.24924 0.86552 0.84440 0.79061 0.78043 1.19825 1.20984 1.21025 1.22200 0.78428 0.97613 1.00944 1.23855 0.95293 0.88367 0.96434 1.88459 1.70865 1.40663 1.29640 0.92204 0.91898 0.91571 0.89371 0.90037 0.77153 0.92098 0.92246 0.92317 0.92179 0.93047 0.93199 0.92715 0.94236 0.85903 0.92092 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.44 37.16 0.35 -0.92 16 2 C 0.08 0.75 4.16 -26.00 -0.11 0.64 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.16 -1.48 6.20 -24.78 -0.15 -1.63 16 5 C 0.14 1.78 3.44 -65.68 -0.23 1.55 16 6 H 0.11 1.62 7.61 -51.93 -0.40 1.22 16 7 N -0.75 -10.78 5.12 -56.48 -0.29 -11.07 16 8 C 0.70 14.02 8.29 -86.92 -0.72 13.30 16 9 O -0.58 -14.37 15.45 5.28 0.08 -14.28 16 10 N -0.62 -12.31 2.97 -178.51 -0.53 -12.84 16 11 C 0.12 1.73 6.39 -3.72 -0.02 1.70 16 12 C -0.13 -2.10 6.08 -26.62 -0.16 -2.26 16 13 C -0.11 -2.15 5.11 -26.69 -0.14 -2.29 16 14 C 0.04 0.97 2.25 -91.65 -0.21 0.76 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 16 C -0.52 -14.12 8.56 -34.44 -0.29 -14.41 16 17 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 19 N -0.88 -25.76 11.40 55.43 0.63 -25.13 16 20 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.13 3.11 5.41 -3.71 -0.02 3.09 16 25 C 0.04 0.52 7.48 38.18 0.29 0.81 16 26 O -0.38 -4.97 11.02 -35.23 -0.39 -5.35 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.65 7.70 -51.93 -0.40 0.25 16 32 H 0.39 4.52 6.06 -40.82 -0.25 4.27 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.69 5.65 -51.93 -0.29 0.39 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.12 3.51 5.13 -51.93 -0.27 3.24 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 337.11 15.07 5.08 5.08 Total: -1.00 -32.06 337.11 -9.01 -41.07 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.06 Total: 4.27 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -1.51 Total: 1.99 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: -0.19 Total: -49.04 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.31 Total: -19.64 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.06 -9.01 -41.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595652497.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.455 kcal (2) G-P(sol) polarization free energy of solvation -32.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds