Wall clock time and date at job start Tue Mar 31 2020 06:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47059 * 2 1 4 4 O 1.21280 * 119.99630 * 0.02562 * 3 2 1 5 5 N 1.34772 * 120.00060 * 180.02562 * 3 2 1 6 6 C 1.46503 * 119.99968 * 180.02562 * 5 3 2 7 7 H 1.09002 * 109.52385 * 34.91244 * 6 5 3 8 8 C 1.53358 * 109.68175 * 274.74569 * 6 5 3 9 9 C 1.53039 * 109.60688 * 178.75004 * 8 6 5 10 10 C 1.53184 * 109.31551 * 61.37339 * 9 8 6 11 11 N 1.46930 * 108.77675 * 305.36543 * 10 9 8 12 12 C 1.34772 * 120.63360 * 233.62867 * 11 10 9 13 13 O 1.21284 * 120.00352 * 174.76199 * 12 11 10 14 14 C 1.50700 * 119.99884 * 354.76327 * 12 11 10 15 15 H 1.09001 * 109.47096 * 42.75301 * 14 12 11 16 16 C 1.52997 * 109.47233 * 282.75488 * 14 12 11 17 17 C 1.50703 * 109.47334 * 162.74989 * 14 12 11 18 18 H 1.08004 * 119.99771 * 0.02562 * 17 14 12 19 19 C 1.37879 * 120.00025 * 179.97438 * 17 14 12 20 20 N 1.31506 * 120.00044 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 119.99808 * 180.02562 * 19 17 14 22 22 H 1.48507 * 109.47079 * 60.00027 * 21 19 17 23 23 H 1.48502 * 109.47016 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47299 * 300.00147 * 21 19 17 25 25 C 1.46927 * 118.73795 * 53.60706 * 11 10 9 26 26 H 1.09004 * 109.47383 * 59.99683 * 1 2 3 27 27 H 1.09005 * 109.47147 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47069 * 299.99900 * 1 2 3 29 29 H 1.09008 * 109.46981 * 240.00463 * 2 1 3 30 30 H 1.08996 * 109.47592 * 120.00499 * 2 1 3 31 31 H 0.97000 * 119.99827 * 359.97438 * 5 3 2 32 32 H 1.09005 * 109.41608 * 58.70847 * 8 6 5 33 33 H 1.08995 * 109.43056 * 298.79879 * 8 6 5 34 34 H 1.09005 * 109.49150 * 301.42293 * 9 8 6 35 35 H 1.08994 * 109.49499 * 181.32832 * 9 8 6 36 36 H 1.08997 * 109.58836 * 185.57893 * 10 9 8 37 37 H 1.08996 * 109.58879 * 65.14959 * 10 9 8 38 38 H 1.09001 * 109.47574 * 173.27813 * 16 14 12 39 39 H 1.09010 * 109.46827 * 293.27402 * 16 14 12 40 40 H 1.08998 * 109.47193 * 53.27038 * 16 14 12 41 41 H 0.97005 * 119.99808 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.58686 * 66.18162 * 25 11 10 43 43 H 1.08999 * 109.58821 * 186.45930 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 0.0005 5 7 3.3573 1.6671 -0.0005 6 6 3.8456 3.0484 0.0000 7 1 3.1731 3.6723 0.5887 8 6 3.9044 3.5760 -1.4387 9 6 4.3850 5.0290 -1.4336 10 6 5.7947 5.0943 -0.8378 11 7 5.7781 4.4596 0.4872 12 6 6.2378 5.1178 1.5697 13 8 6.1318 4.6217 2.6714 14 6 6.8834 6.4702 1.4113 15 1 6.3065 7.0678 0.7055 16 6 8.3097 6.2961 0.8857 17 6 6.9218 7.1681 2.7465 18 1 6.5193 6.6807 3.6223 19 6 7.4717 8.4282 2.8502 20 7 7.9623 9.0213 1.7839 21 14 7.5199 9.2928 4.5053 22 1 8.3057 8.4782 5.4667 23 1 8.1571 10.6251 4.3495 24 1 6.1357 9.4623 5.0158 25 6 5.2503 3.0939 0.6097 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.9877 0.9299 -0.0005 32 1 2.9112 3.5235 -1.8848 33 1 4.5961 2.9667 -2.0204 34 1 3.7072 5.6342 -0.8315 35 1 4.4036 5.4095 -2.4548 36 1 6.1024 6.1354 -0.7404 37 1 6.4911 4.5646 -1.4879 38 1 8.7350 7.2735 0.6581 39 1 8.9184 5.8025 1.6434 40 1 8.2918 5.6880 -0.0188 41 1 8.3488 9.9080 1.8569 42 1 5.9022 2.4011 0.0777 43 1 5.2011 2.8142 1.6621 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597025985.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:08 Heat of formation + Delta-G solvation = -89.160925 kcal Electronic energy + Delta-G solvation = -22911.216892 eV Core-core repulsion = 19569.683375 eV Total energy + Delta-G solvation = -3341.533517 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.24093 -39.22252 -36.98092 -34.51202 -33.74912 -33.02040 -31.91929 -30.75004 -29.38746 -25.30414 -25.15764 -24.89030 -22.64819 -22.21681 -20.47143 -20.38293 -18.37731 -17.30166 -16.53946 -16.24737 -15.80697 -15.72284 -15.13053 -14.59102 -14.34192 -14.16585 -14.04604 -13.82343 -13.24159 -12.96647 -12.79836 -12.72790 -12.34434 -12.29948 -11.97906 -11.50647 -11.42481 -11.36698 -10.98086 -10.96517 -10.88439 -10.77020 -10.66689 -10.62289 -10.24410 -9.99226 -9.90647 -9.17097 -8.96767 -8.60805 -8.32150 -8.12941 -6.03775 -4.06228 2.54432 2.93236 3.36761 3.39023 3.44583 3.65041 3.71358 4.46714 4.52630 4.76796 4.80768 4.86648 4.88201 5.05458 5.15642 5.27072 5.30150 5.35711 5.54268 5.60140 5.62546 5.69124 5.79997 5.84813 5.98543 5.99809 6.04648 6.12201 6.27223 6.30392 6.43700 6.65398 6.82040 6.93488 7.06255 7.37303 7.44356 7.74244 7.95808 8.06602 8.13636 8.36297 9.00257 9.17300 9.58753 11.04284 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027663 B = 0.003732 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.932528 B = 7501.380826 C = 7906.428018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.510 3.490 4 O -0.539 6.539 5 N -0.725 5.725 6 C 0.130 3.870 7 H 0.092 0.908 8 C -0.124 4.124 9 C -0.133 4.133 10 C 0.107 3.893 11 N -0.623 5.623 12 C 0.525 3.475 13 O -0.544 6.544 14 C 0.033 3.967 15 H 0.050 0.950 16 C -0.128 4.128 17 C -0.503 4.503 18 H 0.071 0.929 19 C 0.060 3.940 20 N -0.896 5.896 21 Si 0.900 3.100 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.276 1.276 25 C 0.107 3.893 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.399 0.601 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.034 0.966 40 H 0.013 0.987 41 H 0.261 0.739 42 H 0.060 0.940 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.535 -16.094 -9.951 20.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.184 4.184 3 C 0.297 3.703 4 O -0.415 6.415 5 N -0.377 5.377 6 C 0.024 3.976 7 H 0.110 0.890 8 C -0.163 4.163 9 C -0.172 4.172 10 C -0.016 4.016 11 N -0.359 5.359 12 C 0.316 3.684 13 O -0.420 6.420 14 C 0.012 3.988 15 H 0.068 0.932 16 C -0.186 4.186 17 C -0.542 4.542 18 H 0.089 0.911 19 C -0.141 4.141 20 N -0.535 5.535 21 Si 0.728 3.272 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.017 4.017 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.233 0.767 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.053 0.947 40 H 0.032 0.968 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.058 -15.497 -9.365 19.819 hybrid contribution 0.406 0.063 0.689 0.802 sum -7.653 -15.434 -8.675 19.288 Atomic orbital electron populations 1.21527 0.93057 1.01462 1.03447 1.21637 0.98694 0.93831 1.04260 1.20796 0.82109 0.91850 0.75582 1.90719 1.55218 1.46582 1.48969 1.46025 1.07184 1.08728 1.75758 1.21430 0.96295 0.82622 0.97244 0.88993 1.21920 1.01603 0.96644 0.96125 1.21917 0.97493 0.96214 1.01599 1.21789 0.96014 1.00326 0.83473 1.48269 1.64235 1.14557 1.08881 1.22101 0.75688 0.88182 0.82388 1.90524 1.56707 1.69218 1.25537 1.18879 0.93587 0.86930 0.99415 0.93190 1.21707 0.97675 1.02480 0.96731 1.21083 1.39069 1.00291 0.93712 0.91117 1.24925 0.95118 0.97101 0.96913 1.69866 1.40421 1.14962 1.28293 0.86515 0.78409 0.78305 0.83975 1.20170 1.21339 1.20193 1.21517 0.92003 0.85603 1.02616 0.92011 0.92168 0.91924 0.89021 0.88916 0.76700 0.91596 0.91874 0.91062 0.90532 0.88019 0.92086 0.89154 0.94659 0.96825 0.92884 0.92142 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.20 37.16 0.34 -0.77 16 2 C -0.14 -1.07 6.42 -27.88 -0.18 -1.25 16 3 C 0.51 5.94 7.80 -10.99 -0.09 5.86 16 4 O -0.54 -8.72 15.64 5.56 0.09 -8.64 16 5 N -0.73 -7.54 5.09 -53.53 -0.27 -7.81 16 6 C 0.13 1.72 2.62 -67.64 -0.18 1.54 16 7 H 0.09 1.55 7.58 -51.93 -0.39 1.15 16 8 C -0.12 -1.48 5.48 -26.53 -0.15 -1.63 16 9 C -0.13 -1.70 6.08 -26.62 -0.16 -1.86 16 10 C 0.11 1.57 5.51 -3.71 -0.02 1.55 16 11 N -0.62 -11.03 2.97 -172.77 -0.51 -11.54 16 12 C 0.52 12.06 6.86 -10.99 -0.08 11.99 16 13 O -0.54 -14.28 15.05 5.55 0.08 -14.20 16 14 C 0.03 0.81 1.79 -92.92 -0.17 0.65 16 15 H 0.05 1.25 6.47 -51.93 -0.34 0.92 16 16 C -0.13 -2.95 8.66 37.16 0.32 -2.63 16 17 C -0.50 -14.33 8.35 -34.44 -0.29 -14.62 16 18 H 0.07 2.13 6.89 -52.48 -0.36 1.77 16 19 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 20 N -0.90 -25.01 11.40 55.43 0.63 -24.37 16 21 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.11 1.56 5.90 -3.71 -0.02 1.54 16 26 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 29 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.40 2.86 8.60 -40.82 -0.35 2.51 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 1.66 5.36 -51.93 -0.28 1.38 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 2.25 6.28 -51.93 -0.33 1.92 16 39 H 0.03 0.84 8.14 -51.92 -0.42 0.41 16 40 H 0.01 0.25 7.29 -51.93 -0.38 -0.12 16 41 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 1.55 7.00 -51.93 -0.36 1.19 16 LS Contribution 342.39 15.07 5.16 5.16 Total: -1.00 -33.56 342.39 -7.59 -41.15 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.99 Total: 1.41 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -0.75 Total: 1.95 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.15 Total: -43.73 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.17 Total: -22.83 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.56 -7.59 -41.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597025985.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.012 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds