Wall clock time and date at job start Tue Mar 31 2020 06:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.55305 * 2 1 4 4 C 1.54993 * 110.61550 * 237.12231 * 2 1 3 5 5 C 1.54992 * 102.01011 * 204.59754 * 4 2 1 6 6 C 1.54096 * 104.25225 * 20.66802 * 5 4 2 7 7 H 1.09000 * 110.00360 * 242.67218 * 6 5 4 8 8 C 1.50699 * 109.88148 * 121.59096 * 6 5 4 9 9 O 1.21282 * 120.00061 * 245.71545 * 8 6 5 10 10 N 1.34776 * 119.99813 * 65.70988 * 8 6 5 11 11 C 1.47077 * 120.88240 * 359.72880 * 10 8 6 12 12 C 1.53693 * 108.27930 * 128.75124 * 11 10 8 13 13 N 1.46902 * 109.25586 * 54.08131 * 12 11 10 14 14 C 1.46901 * 111.00133 * 172.60958 * 13 12 11 15 15 C 1.50701 * 109.47065 * 59.38050 * 14 13 12 16 16 H 1.07990 * 120.00028 * 5.02492 * 15 14 13 17 17 C 1.37881 * 119.99766 * 185.02019 * 15 14 13 18 18 N 1.31511 * 120.00158 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99583 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47297 * 90.00054 * 19 17 15 21 21 H 1.48505 * 109.46467 * 209.99997 * 19 17 15 22 22 H 1.48498 * 109.47116 * 329.99360 * 19 17 15 23 23 C 1.46904 * 111.26877 * 296.75605 * 13 12 11 24 24 C 1.47083 * 120.88017 * 180.02562 * 10 8 6 25 25 O 1.43746 * 107.29558 * 2.16596 * 6 5 4 26 26 H 1.08998 * 109.46988 * 300.69631 * 1 2 3 27 27 H 1.08998 * 109.47020 * 60.69726 * 1 2 3 28 28 H 1.08998 * 109.47255 * 180.69822 * 1 2 3 29 29 H 1.08999 * 110.91202 * 322.67495 * 4 2 1 30 30 H 1.09001 * 110.91306 * 86.27949 * 4 2 1 31 31 H 1.08998 * 110.33990 * 262.02608 * 5 4 2 32 32 H 1.08997 * 110.68267 * 139.47950 * 5 4 2 33 33 H 1.09001 * 109.62645 * 248.51937 * 11 10 8 34 34 H 1.08997 * 109.62881 * 9.10036 * 11 10 8 35 35 H 1.08994 * 109.65088 * 294.08098 * 12 11 10 36 36 H 1.08998 * 109.42569 * 173.94753 * 12 11 10 37 37 H 1.09001 * 109.47226 * 179.38690 * 14 13 12 38 38 H 1.09005 * 109.47048 * 299.38059 * 14 13 12 39 39 H 0.97000 * 120.00166 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.49458 * 303.14632 * 23 13 12 41 41 H 1.09000 * 109.50854 * 183.07621 * 23 13 12 42 42 H 1.09004 * 109.63094 * 350.90348 * 24 10 8 43 43 H 1.09000 * 109.62444 * 111.28718 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7875 -1.2183 5 6 3.4795 -1.2178 -0.7217 6 6 3.3839 -1.1243 0.8135 7 1 4.0855 -0.3779 1.1859 8 6 3.6888 -2.4658 1.4286 9 8 2.8233 -3.0697 2.0263 10 7 4.9232 -2.9946 1.3145 11 6 5.9856 -2.2819 0.5888 12 6 7.2252 -2.2125 1.4948 13 7 7.5780 -3.5679 1.9378 14 6 8.8564 -3.5692 2.6614 15 6 8.7543 -2.6659 3.8633 16 1 7.8097 -2.2071 4.1152 17 6 9.8669 -2.4253 4.6414 18 7 11.0171 -2.9845 4.3349 19 14 9.7401 -1.3060 6.1316 20 1 9.3850 -2.1120 7.3272 21 1 11.0445 -0.6332 6.3577 22 1 8.6901 -0.2830 5.8944 23 6 6.5093 -4.1561 2.7563 24 6 5.2419 -4.3026 1.9068 25 8 2.0384 -0.7337 1.1349 26 1 -0.3633 0.5246 0.8837 27 1 -0.3633 0.5030 -0.8962 28 1 -0.3634 -1.0276 0.0125 29 1 1.4549 -1.6584 -1.4284 30 1 2.1509 -0.1445 -2.0953 31 1 4.2407 -0.5349 -1.0989 32 1 3.6997 -2.2402 -1.0287 33 1 6.2277 -2.8203 -0.3275 34 1 5.6506 -1.2734 0.3466 35 1 7.0099 -1.5904 2.3635 36 1 8.0580 -1.7837 0.9374 37 1 9.0883 -4.5832 2.9875 38 1 9.6471 -3.2097 2.0028 39 1 11.7999 -2.8149 4.8821 40 1 6.3039 -3.5069 3.6074 41 1 6.8227 -5.1369 3.1140 42 1 4.4148 -4.6308 2.5364 43 1 5.4107 -5.0319 1.1144 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602200550.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:33 Heat of formation + Delta-G solvation = -72.887811 kcal Electronic energy + Delta-G solvation = -23220.069119 eV Core-core repulsion = 19879.241257 eV Total energy + Delta-G solvation = -3340.827862 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.58144 -38.89757 -37.29934 -34.53460 -32.57920 -32.45245 -31.91930 -30.54201 -28.35850 -26.78676 -25.25754 -23.14369 -22.96992 -21.94783 -21.43932 -20.40417 -18.79971 -17.31993 -16.65152 -16.37352 -16.27742 -15.49779 -14.83270 -14.55895 -14.50142 -14.41943 -14.06184 -13.79766 -13.52057 -13.39898 -12.79187 -12.67031 -12.48950 -12.22963 -11.92407 -11.86229 -11.66797 -11.19511 -11.16369 -11.11131 -11.03081 -11.00727 -10.68566 -10.64341 -10.29846 -10.14958 -9.93235 -9.70557 -9.29997 -8.49622 -8.44035 -7.30458 -6.09515 -4.19084 2.70402 2.93032 3.23922 3.31081 3.34091 3.74645 4.23654 4.35706 4.40127 4.57347 4.63592 4.83433 4.90329 5.08067 5.12734 5.20735 5.26094 5.30124 5.41906 5.44989 5.47851 5.56473 5.60702 5.69979 5.70755 5.81985 5.85679 5.92533 5.96775 6.08127 6.37446 6.57542 6.61454 6.67869 6.79807 7.16085 7.44296 7.55997 7.82275 7.92446 8.14525 8.20497 8.32967 8.90778 9.48607 10.95608 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025071 B = 0.003995 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.544192 B = 7006.771144 C = 7363.650078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.067 3.933 3 H 0.072 0.928 4 C -0.149 4.149 5 C -0.146 4.146 6 C 0.062 3.938 7 H 0.094 0.906 8 C 0.514 3.486 9 O -0.531 6.531 10 N -0.604 5.604 11 C 0.107 3.893 12 C 0.049 3.951 13 N -0.540 5.540 14 C 0.188 3.812 15 C -0.553 4.553 16 H 0.056 0.944 17 C 0.067 3.933 18 N -0.890 5.890 19 Si 0.888 3.112 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.049 3.951 24 C 0.117 3.883 25 O -0.345 6.345 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.079 0.921 37 H 0.029 0.971 38 H 0.036 0.964 39 H 0.263 0.737 40 H 0.042 0.958 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.744 5.264 -12.879 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.010 3.990 3 H 0.090 0.910 4 C -0.186 4.186 5 C -0.184 4.184 6 C 0.001 3.999 7 H 0.112 0.888 8 C 0.300 3.700 9 O -0.407 6.407 10 N -0.340 5.340 11 C -0.016 4.016 12 C -0.080 4.080 13 N -0.265 5.265 14 C 0.062 3.938 15 C -0.592 4.592 16 H 0.074 0.926 17 C -0.136 4.136 18 N -0.528 5.528 19 Si 0.716 3.284 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.080 4.080 24 C -0.005 4.005 25 O -0.263 6.263 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.047 0.953 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.077 4.580 -12.719 20.250 hybrid contribution 0.342 1.247 1.527 2.001 sum -14.735 5.827 -11.192 19.400 Atomic orbital electron populations 1.21760 0.92956 1.03196 1.02360 1.23206 0.95529 0.95293 0.84972 0.90994 1.23225 0.95904 1.00977 0.98522 1.23004 0.98561 1.03764 0.93054 1.22589 0.86962 0.95034 0.95328 0.88818 1.20366 0.82154 0.87006 0.80440 1.90679 1.45844 1.62137 1.42074 1.48129 1.09916 1.21172 1.54735 1.22186 0.87713 0.96118 0.95611 1.22315 0.95458 0.92327 0.97915 1.62495 1.04481 1.18600 1.40881 1.19768 0.85100 0.97011 0.91875 1.21732 0.95668 1.29741 1.12029 0.92609 1.24950 0.95283 0.95799 0.97606 1.69933 1.00186 1.43547 1.39129 0.86652 0.77448 0.80960 0.83323 1.20559 1.21062 1.19982 1.22265 0.90570 1.00567 0.94608 1.21838 0.97873 0.83369 0.97453 1.89025 1.26102 1.73118 1.38074 0.91741 0.91108 0.91600 0.90220 0.89804 0.89400 0.89787 0.90782 0.90456 0.93689 0.90227 0.95272 0.94544 0.92725 0.93971 0.90301 0.89526 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.66 37.16 0.36 -0.87 16 2 C 0.07 0.67 3.97 -25.68 -0.10 0.57 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 4 C -0.15 -1.24 6.60 -24.63 -0.16 -1.40 16 5 C -0.15 -1.37 5.13 -25.11 -0.13 -1.50 16 6 C 0.06 0.81 2.95 -27.31 -0.08 0.73 16 7 H 0.09 1.12 7.45 -51.93 -0.39 0.74 16 8 C 0.51 8.51 6.89 -10.99 -0.08 8.43 16 9 O -0.53 -10.85 15.98 -14.01 -0.22 -11.08 16 10 N -0.60 -9.45 3.00 -172.16 -0.52 -9.97 16 11 C 0.11 1.45 5.80 -3.37 -0.02 1.43 16 12 C 0.05 0.87 5.17 -3.46 -0.02 0.86 16 13 N -0.54 -10.90 4.83 -235.44 -1.14 -12.03 16 14 C 0.19 4.63 5.11 -4.97 -0.03 4.60 16 15 C -0.55 -14.79 7.75 -34.44 -0.27 -15.06 16 16 H 0.06 1.51 5.88 -52.49 -0.31 1.20 16 17 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 18 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 19 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.05 0.94 5.24 -3.68 -0.02 0.92 16 24 C 0.12 1.91 6.60 -3.58 -0.02 1.89 16 25 O -0.34 -5.02 10.44 -54.80 -0.57 -5.59 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.62 7.79 -51.93 -0.40 0.22 16 32 H 0.08 0.83 7.55 -51.93 -0.39 0.44 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.84 5.03 -51.93 -0.26 0.58 16 35 H 0.04 0.90 6.79 -51.93 -0.35 0.55 16 36 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 37 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 38 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.04 0.91 6.92 -51.93 -0.36 0.55 16 41 H 0.08 1.47 8.05 -51.93 -0.42 1.06 16 42 H 0.09 1.46 7.06 -51.93 -0.37 1.10 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 334.93 15.07 5.05 5.05 Total: -1.00 -32.21 334.93 -9.37 -41.59 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -7.03 Total: -1.64 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -0.66 Total: 2.32 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.92 Total: -46.88 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.80 Total: -16.66 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.21 -9.37 -41.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602200550.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.301 kcal (2) G-P(sol) polarization free energy of solvation -32.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds