Wall clock time and date at job start Tue Mar 31 2020 06:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09004 * 110.80778 * 2 1 4 4 C 1.54997 * 110.90814 * 236.36930 * 2 1 3 5 5 O 1.44386 * 103.49184 * 204.78173 * 4 2 1 6 6 C 1.43741 * 106.97662 * 40.05966 * 5 4 2 7 7 H 1.08993 * 109.87629 * 92.91044 * 6 5 4 8 8 C 1.50701 * 109.87932 * 214.06576 * 6 5 4 9 9 O 1.21285 * 120.00051 * 3.54319 * 8 6 5 10 10 N 1.34772 * 119.99927 * 183.54938 * 8 6 5 11 11 C 1.46498 * 120.00112 * 179.97438 * 10 8 6 12 12 C 1.53042 * 109.45763 * 275.02346 * 11 10 8 13 13 C 1.53198 * 109.31103 * 178.59798 * 12 11 10 14 14 N 1.46931 * 108.76307 * 54.65783 * 13 12 11 15 15 C 1.36940 * 120.62700 * 126.40662 * 14 13 12 16 16 H 1.07999 * 120.00045 * 331.81729 * 15 14 13 17 17 C 1.38807 * 119.99751 * 151.82495 * 15 14 13 18 18 N 1.31619 * 120.00281 * 343.07206 * 17 15 14 19 19 Si 1.86801 * 120.00082 * 163.06967 * 17 15 14 20 20 H 1.48497 * 109.47019 * 89.99837 * 19 17 15 21 21 H 1.48494 * 109.47317 * 210.00127 * 19 17 15 22 22 H 1.48502 * 109.47178 * 330.00077 * 19 17 15 23 23 C 1.46921 * 118.73674 * 306.38064 * 14 13 12 24 24 C 1.53040 * 109.46190 * 154.96934 * 11 10 8 25 25 C 1.54100 * 107.29467 * 333.48699 * 6 5 4 26 26 H 1.08997 * 109.47674 * 182.17502 * 1 2 3 27 27 H 1.08999 * 109.47004 * 62.17371 * 1 2 3 28 28 H 1.09002 * 109.47286 * 302.17383 * 1 2 3 29 29 H 1.09000 * 110.61899 * 323.28178 * 4 2 1 30 30 H 1.09003 * 110.61720 * 86.28374 * 4 2 1 31 31 H 0.97003 * 120.00381 * 359.97438 * 10 8 6 32 32 H 1.09003 * 109.46354 * 34.99352 * 11 10 8 33 33 H 1.09003 * 109.50175 * 298.56313 * 12 11 10 34 34 H 1.09003 * 109.49521 * 58.66733 * 12 11 10 35 35 H 1.08995 * 109.59836 * 294.86708 * 13 12 11 36 36 H 1.09006 * 109.70000 * 174.50424 * 13 12 11 37 37 H 0.97001 * 120.00106 * 180.02562 * 18 17 15 38 38 H 1.08995 * 109.59148 * 293.81876 * 23 14 13 39 39 H 1.09003 * 109.69922 * 173.46399 * 23 14 13 40 40 H 1.08997 * 109.50228 * 301.33617 * 24 11 10 41 41 H 1.09003 * 109.49781 * 61.43570 * 24 11 10 42 42 H 1.08997 * 110.49238 * 243.35474 * 25 6 5 43 43 H 1.09000 * 110.48794 * 120.70385 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0830 -0.8019 -1.2056 5 8 3.3940 -1.2142 -0.7629 6 6 3.2717 -1.5885 0.6196 7 1 3.0824 -2.6590 0.6983 8 6 4.5349 -1.2327 1.3605 9 8 5.4313 -0.6513 0.7865 10 7 4.6685 -1.5608 2.6608 11 6 5.8966 -1.2154 3.3809 12 6 6.9469 -2.3042 3.1491 13 6 8.2410 -1.9226 3.8748 14 7 7.9334 -1.6727 5.2896 15 6 8.6206 -2.3245 6.2787 16 1 9.0387 -3.3024 6.0913 17 6 8.7795 -1.7282 7.5220 18 7 8.5774 -0.4353 7.6626 19 14 9.2803 -2.7609 8.9959 20 1 10.7614 -2.7925 9.0979 21 1 8.7114 -2.1673 10.2325 22 1 8.7660 -4.1440 8.8290 23 6 6.8749 -0.7098 5.6230 24 6 5.5962 -1.1048 4.8775 25 6 2.0824 -0.8017 1.2037 26 1 -0.3634 -1.0269 0.0390 27 1 -0.3633 0.4797 -0.9088 28 1 -0.3634 0.5472 0.8699 29 1 1.4561 -1.6700 -1.4093 30 1 2.1582 -0.1659 -2.0876 31 1 3.9515 -2.0256 3.1200 32 1 6.2760 -0.2612 3.0152 33 1 6.5783 -3.2538 3.5372 34 1 7.1433 -2.3987 2.0811 35 1 8.6590 -1.0211 3.4269 36 1 8.9606 -2.7375 3.7957 37 1 8.6889 -0.0186 8.5314 38 1 7.1816 0.2906 5.3179 39 1 6.6906 -0.7237 6.6973 40 1 4.8312 -0.3456 5.0399 41 1 5.2406 -2.0658 5.2492 42 1 2.4208 -0.1260 1.9891 43 1 1.3246 -1.4848 1.5872 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718559071.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:54 Heat of formation + Delta-G solvation = -70.578892 kcal Electronic energy + Delta-G solvation = -22798.470929 eV Core-core repulsion = 19457.743189 eV Total energy + Delta-G solvation = -3340.727740 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.47585 -38.81487 -37.13933 -34.46639 -33.81644 -32.28966 -30.76957 -29.96650 -29.05678 -26.65552 -25.18567 -23.75986 -22.24835 -21.78418 -20.98374 -20.15564 -19.29924 -17.62547 -16.69868 -16.34109 -16.22797 -15.36030 -15.08866 -14.76273 -14.35601 -14.07894 -13.85900 -13.62162 -13.52377 -13.24644 -12.97173 -12.65011 -12.47763 -12.35941 -11.94629 -11.63841 -11.45766 -11.17990 -11.10640 -11.08650 -10.84294 -10.70831 -10.49545 -10.27544 -10.20380 -10.03907 -9.81121 -9.62840 -9.29395 -8.71031 -8.45763 -6.68129 -5.79773 -3.21822 2.72601 3.03736 3.37159 3.44105 3.46367 3.82117 4.15530 4.40978 4.49427 4.51344 4.70494 4.87291 4.99663 5.10901 5.22019 5.32587 5.33573 5.39132 5.41802 5.44410 5.50734 5.59797 5.66149 5.68945 5.86292 5.87931 6.07938 6.27405 6.33461 6.49020 6.54604 6.58954 6.59194 6.80826 6.92797 7.00519 7.31095 7.58940 7.72049 7.79845 8.40694 8.44579 9.20666 9.83904 10.41136 11.29231 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040138 B = 0.003281 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.429278 B = 8531.323937 C = 8863.297428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 H 0.088 0.912 4 C 0.048 3.952 5 O -0.347 6.347 6 C 0.060 3.940 7 H 0.092 0.908 8 C 0.509 3.491 9 O -0.522 6.522 10 N -0.722 5.722 11 C 0.152 3.848 12 C -0.139 4.139 13 C 0.147 3.853 14 N -0.593 5.593 15 C -0.252 4.252 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.175 3.825 24 C -0.146 4.146 25 C -0.144 4.144 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.395 0.605 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.020 0.980 36 H 0.056 0.944 37 H 0.254 0.746 38 H 0.021 0.979 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.084 0.916 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.948 -1.444 -12.688 22.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.146 4.146 3 H 0.107 0.893 4 C -0.029 4.029 5 O -0.264 6.264 6 C -0.002 4.002 7 H 0.110 0.890 8 C 0.293 3.707 9 O -0.397 6.397 10 N -0.374 5.374 11 C 0.049 3.951 12 C -0.180 4.180 13 C 0.020 3.980 14 N -0.316 5.316 15 C -0.382 4.382 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.048 3.952 24 C -0.186 4.186 25 C -0.182 4.182 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.228 0.772 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.038 0.962 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.039 0.961 39 H 0.110 0.890 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.051 -0.920 -13.084 21.512 hybrid contribution -0.308 -0.720 1.143 1.386 sum -17.360 -1.640 -11.941 21.134 Atomic orbital electron populations 1.21721 0.93588 1.02222 1.02354 1.22749 0.96665 1.00617 0.94527 0.89331 1.23716 0.84123 0.97638 0.97413 1.89024 1.28865 1.86161 1.22389 1.22655 0.93744 0.99875 0.83911 0.89026 1.20377 0.88347 0.79563 0.82408 1.90723 1.41582 1.40234 1.67137 1.46277 1.20478 1.60252 1.10431 1.21054 0.83209 0.98902 0.91961 1.22381 0.97677 0.98237 0.99683 1.20878 0.93160 0.98173 0.85745 1.44094 1.38437 1.49153 0.99881 1.19181 1.29852 0.97728 0.91397 0.91667 1.25054 1.00218 0.95116 0.99299 1.70026 1.53277 1.08277 1.23208 0.86302 0.78260 0.79764 0.82480 1.21382 1.21576 1.20507 1.20733 0.83815 0.90977 0.99674 1.22537 1.01463 1.01208 0.93368 1.23034 0.96578 0.99513 0.99048 0.92262 0.92135 0.92032 0.91863 0.88650 0.77165 0.90049 0.92296 0.92707 0.96169 0.92524 0.93609 0.96127 0.89029 0.92770 0.92145 0.89726 0.89477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.19 37.15 0.34 -0.44 16 2 C -0.13 -1.01 3.72 -88.61 -0.33 -1.34 16 3 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.05 0.42 7.17 38.21 0.27 0.70 16 5 O -0.35 -4.69 10.74 -54.80 -0.59 -5.28 16 6 C 0.06 0.69 3.84 -27.31 -0.10 0.58 16 7 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 8 C 0.51 7.83 6.91 -10.99 -0.08 7.75 16 9 O -0.52 -10.59 16.19 -14.01 -0.23 -10.82 16 10 N -0.72 -10.14 5.06 -53.76 -0.27 -10.42 16 11 C 0.15 2.67 2.42 -67.89 -0.16 2.51 16 12 C -0.14 -2.61 5.65 -26.61 -0.15 -2.76 16 13 C 0.15 3.23 6.52 -3.70 -0.02 3.20 16 14 N -0.59 -14.90 2.99 -172.32 -0.52 -15.41 16 15 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 16 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 17 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 18 N -0.90 -26.06 11.19 55.49 0.62 -25.44 16 19 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.17 4.09 5.30 -3.71 -0.02 4.07 16 24 C -0.15 -2.64 5.55 -26.61 -0.15 -2.79 16 25 C -0.14 -1.22 6.20 -25.20 -0.16 -1.38 16 26 H 0.06 0.29 8.10 -51.93 -0.42 -0.13 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.45 8.05 -51.93 -0.42 0.03 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.40 4.28 8.60 -40.82 -0.35 3.93 16 32 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 37 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 2.38 6.07 -51.93 -0.31 2.06 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.08 0.78 7.69 -51.93 -0.40 0.38 16 43 H 0.09 0.53 7.83 -51.93 -0.41 0.12 16 LS Contribution 341.66 15.07 5.15 5.15 Total: -1.00 -32.99 341.66 -8.97 -41.95 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.32 Total: 0.76 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -0.79 Total: 3.02 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.17 Total: -51.27 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.82 Total: -16.09 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.99 -8.97 -41.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718559071.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.627 kcal (2) G-P(sol) polarization free energy of solvation -32.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds