Wall clock time and date at job start Tue Mar 31 2020 06:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.98731 * 2 1 4 4 C 1.54947 * 111.16246 * 235.78033 * 2 1 3 5 5 O 1.43643 * 105.13455 * 205.61450 * 4 2 1 6 6 C 1.43234 * 109.97022 * 24.43389 * 5 4 2 7 7 H 1.09007 * 109.82645 * 238.77007 * 6 5 4 8 8 C 1.50695 * 109.90785 * 117.84321 * 6 5 4 9 9 O 1.21282 * 120.00160 * 356.81080 * 8 6 5 10 10 N 1.34779 * 120.00072 * 176.81565 * 8 6 5 11 11 C 1.46503 * 120.00049 * 179.97438 * 10 8 6 12 12 C 1.53035 * 109.46135 * 275.03124 * 11 10 8 13 13 C 1.53201 * 109.31127 * 178.60263 * 12 11 10 14 14 N 1.46918 * 108.76186 * 54.65401 * 13 12 11 15 15 C 1.36941 * 120.63074 * 126.41281 * 14 13 12 16 16 H 1.08005 * 119.99349 * 332.60565 * 15 14 13 17 17 C 1.38803 * 120.00590 * 152.60366 * 15 14 13 18 18 N 1.31618 * 120.00351 * 159.34161 * 17 15 14 19 19 Si 1.86802 * 119.99834 * 339.34284 * 17 15 14 20 20 H 1.48504 * 109.47356 * 92.94350 * 19 17 15 21 21 H 1.48505 * 109.47242 * 212.94227 * 19 17 15 22 22 H 1.48497 * 109.47295 * 332.94086 * 19 17 15 23 23 C 1.46924 * 118.74592 * 306.38049 * 14 13 12 24 24 C 1.53043 * 109.45889 * 154.97569 * 11 10 8 25 25 C 1.54372 * 107.59203 * 358.28112 * 6 5 4 26 26 H 1.09000 * 109.47372 * 299.29266 * 1 2 3 27 27 H 1.09000 * 109.47424 * 59.29490 * 1 2 3 28 28 H 1.08998 * 109.46908 * 179.29701 * 1 2 3 29 29 H 1.08997 * 110.30740 * 324.53725 * 4 2 1 30 30 H 1.09005 * 110.30635 * 86.70136 * 4 2 1 31 31 H 0.96995 * 119.99772 * 0.02562 * 10 8 6 32 32 H 1.08997 * 109.45606 * 35.00871 * 11 10 8 33 33 H 1.09001 * 109.50006 * 298.56296 * 12 11 10 34 34 H 1.08999 * 109.50154 * 58.66461 * 12 11 10 35 35 H 1.09001 * 109.59434 * 294.86396 * 13 12 11 36 36 H 1.08996 * 109.70386 * 174.50802 * 13 12 11 37 37 H 0.97001 * 120.00449 * 180.02562 * 18 17 15 38 38 H 1.08999 * 109.58705 * 293.83008 * 23 14 13 39 39 H 1.08997 * 109.71178 * 173.46782 * 23 14 13 40 40 H 1.09003 * 109.49229 * 301.33978 * 24 11 10 41 41 H 1.08997 * 109.49507 * 61.43682 * 24 11 10 42 42 H 1.09002 * 110.85415 * 220.45945 * 25 6 5 43 43 H 1.08997 * 111.02457 * 96.91090 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9204 1.0177 0.0000 4 6 2.0894 -0.8126 -1.1948 5 8 3.3908 -1.2511 -0.7737 6 6 3.4514 -1.2999 0.6566 7 1 4.2465 -0.6461 1.0154 8 6 3.7079 -2.7135 1.1114 9 8 3.7709 -3.6104 0.2975 10 7 3.8671 -2.9811 2.4227 11 6 4.1158 -4.3554 2.8649 12 6 2.7821 -5.0882 3.0268 13 6 3.0477 -6.5349 3.4554 14 7 3.8806 -6.5238 4.6657 15 6 3.4883 -7.2020 5.7888 16 1 2.4385 -7.3696 5.9793 17 6 4.4398 -7.6740 6.6824 18 7 4.0975 -7.9516 7.9226 19 14 6.2063 -7.9152 6.1249 20 1 6.9902 -6.6887 6.4192 21 1 6.8007 -9.0680 6.8481 22 1 6.2325 -8.1807 4.6641 23 6 5.1427 -5.7719 4.6479 24 6 4.8537 -4.3340 4.2056 25 6 2.0898 -0.8143 1.1981 26 1 -0.3634 0.5028 0.8962 27 1 -0.3634 0.5247 -0.8836 28 1 -0.3633 -1.0276 -0.0126 29 1 1.4495 -1.6704 -1.4016 30 1 2.1711 -0.1790 -2.0781 31 1 3.8163 -2.2638 3.0737 32 1 4.7258 -4.8708 2.1230 33 1 2.1819 -4.5878 3.7866 34 1 2.2465 -5.0828 2.0775 35 1 3.5697 -7.0627 2.6573 36 1 2.1025 -7.0349 3.6668 37 1 4.7625 -8.2811 8.5472 38 1 5.8356 -6.2375 3.9471 39 1 5.5812 -5.7660 5.6458 40 1 5.7927 -3.7915 4.0953 41 1 4.2337 -3.8407 4.9542 42 1 2.2248 -0.1762 2.0715 43 1 1.4391 -1.6568 1.4322 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718559080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:58 Heat of formation + Delta-G solvation = -65.830357 kcal Electronic energy + Delta-G solvation = -22985.769184 eV Core-core repulsion = 19645.247356 eV Total energy + Delta-G solvation = -3340.521828 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.57764 -38.93081 -37.40834 -34.62022 -33.86689 -32.33120 -30.99483 -30.41782 -29.51530 -26.74811 -25.22138 -23.67397 -22.88900 -21.76537 -21.06639 -20.19079 -19.56332 -17.62715 -17.23670 -16.57272 -15.95738 -15.86461 -15.08339 -14.84247 -14.36538 -14.17727 -13.96039 -13.81293 -13.67932 -13.35836 -13.02129 -12.91975 -12.63747 -12.40823 -12.01796 -11.97081 -11.79920 -11.62873 -11.37142 -11.08492 -10.97788 -10.83557 -10.56766 -10.37707 -10.28740 -10.12081 -9.82241 -9.49028 -9.29580 -8.82013 -8.63756 -7.00250 -5.96231 -3.32137 2.63626 3.00989 3.30462 3.48626 3.52246 3.66556 4.00845 4.33920 4.48420 4.51943 4.69266 4.78039 4.94276 4.97154 5.02964 5.17998 5.20799 5.30553 5.33006 5.38684 5.44668 5.47041 5.54107 5.66220 5.66923 5.80773 5.85911 6.03051 6.09243 6.16077 6.31806 6.38801 6.56388 6.59106 6.63273 6.64979 6.75912 6.91192 7.60293 7.94770 8.31062 8.31626 8.92605 9.70672 10.08348 11.19753 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036371 B = 0.003629 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.660494 B = 7714.480159 C = 7977.762463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 H 0.090 0.910 4 C 0.052 3.948 5 O -0.352 6.352 6 C 0.065 3.935 7 H 0.105 0.895 8 C 0.497 3.503 9 O -0.524 6.524 10 N -0.723 5.723 11 C 0.151 3.849 12 C -0.140 4.140 13 C 0.151 3.849 14 N -0.606 5.606 15 C -0.260 4.260 16 H 0.086 0.914 17 C 0.023 3.977 18 N -0.909 5.909 19 Si 0.881 3.119 20 H -0.288 1.288 21 H -0.303 1.303 22 H -0.270 1.270 23 C 0.129 3.871 24 C -0.140 4.140 25 C -0.143 4.143 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.396 0.604 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.025 0.975 36 H 0.066 0.934 37 H 0.263 0.737 38 H 0.027 0.973 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.325 18.775 -13.669 23.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 H 0.108 0.892 4 C -0.025 4.025 5 O -0.270 6.270 6 C 0.004 3.996 7 H 0.122 0.878 8 C 0.282 3.718 9 O -0.399 6.399 10 N -0.375 5.375 11 C 0.047 3.953 12 C -0.180 4.180 13 C 0.024 3.976 14 N -0.330 5.330 15 C -0.388 4.388 16 H 0.104 0.896 17 C -0.176 4.176 18 N -0.552 5.552 19 Si 0.712 3.288 20 H -0.216 1.216 21 H -0.231 1.231 22 H -0.195 1.195 23 C 0.003 3.997 24 C -0.180 4.180 25 C -0.181 4.181 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.230 0.770 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.043 0.957 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.045 0.955 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.079 17.963 -14.258 23.294 hybrid contribution 0.886 0.251 0.334 0.980 sum -3.193 18.214 -13.925 23.148 Atomic orbital electron populations 1.21680 0.93339 1.02605 1.02343 1.22875 0.97181 0.99960 0.94488 0.89204 1.23558 0.84360 0.97476 0.97093 1.88518 1.31900 1.88352 1.18206 1.22638 0.99506 0.94045 0.83438 0.87789 1.20932 0.77064 0.91053 0.82759 1.90714 1.49034 1.47272 1.52914 1.46256 1.73224 1.10963 1.07056 1.20994 0.97151 0.80782 0.96340 1.22371 0.96436 0.98692 1.00547 1.20895 0.95480 0.92709 0.88513 1.44402 1.21301 1.56357 1.10942 1.18933 0.93788 1.29583 0.96484 0.89635 1.25279 0.97828 0.98731 0.95745 1.69833 1.34502 1.47906 1.02927 0.86977 0.86160 0.76673 0.79019 1.21616 1.23094 1.19474 1.21300 0.89201 0.89080 1.00130 1.22343 0.99503 1.00474 0.95658 1.23201 0.94880 1.00861 0.99143 0.91919 0.92058 0.92068 0.91784 0.89331 0.77031 0.89951 0.91838 0.92382 0.95705 0.91582 0.92755 0.95481 0.90492 0.92220 0.91125 0.88987 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.30 37.16 0.35 -0.48 16 2 C -0.13 -0.87 3.69 -88.37 -0.33 -1.20 16 3 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 4 C 0.05 0.47 7.26 38.19 0.28 0.75 16 5 O -0.35 -4.52 10.57 -54.84 -0.58 -5.10 16 6 C 0.07 0.70 3.94 -27.17 -0.11 0.59 16 7 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 8 C 0.50 7.11 7.00 -10.99 -0.08 7.03 16 9 O -0.52 -10.00 16.19 -14.06 -0.23 -10.23 16 10 N -0.72 -9.33 5.05 -53.77 -0.27 -9.60 16 11 C 0.15 2.45 2.42 -67.89 -0.16 2.28 16 12 C -0.14 -2.41 5.65 -26.61 -0.15 -2.56 16 13 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 14 N -0.61 -14.37 2.77 -172.32 -0.48 -14.85 16 15 C -0.26 -7.22 10.03 -15.06 -0.15 -7.37 16 16 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 17 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 18 N -0.91 -27.71 13.97 55.49 0.78 -26.93 16 19 Si 0.88 22.32 24.35 -169.99 -4.14 18.18 16 20 H -0.29 -6.97 6.62 56.52 0.37 -6.60 16 21 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 22 H -0.27 -6.78 6.63 56.52 0.37 -6.41 16 23 C 0.13 2.78 4.20 -3.71 -0.02 2.76 16 24 C -0.14 -2.35 5.55 -26.61 -0.15 -2.50 16 25 C -0.14 -1.11 5.99 -24.79 -0.15 -1.26 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 29 H 0.06 0.63 8.02 -51.93 -0.42 0.21 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.40 3.87 8.60 -40.82 -0.35 3.52 16 32 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 1.33 7.93 -51.93 -0.41 0.91 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.03 0.59 7.07 -51.93 -0.37 0.22 16 39 H 0.08 1.79 4.50 -51.93 -0.23 1.56 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.09 0.76 7.74 -51.93 -0.40 0.36 16 LS Contribution 335.53 15.07 5.06 5.06 Total: -1.00 -33.95 335.53 -7.90 -41.85 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -7.26 Total: -0.02 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -0.78 Total: 1.64 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 0.03 Total: -51.38 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.81 Total: -15.33 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.14 Total: 18.18 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.95 -7.90 -41.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718559080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.979 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds