Wall clock time and date at job start Tue Mar 31 2020 06:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.80460 * 2 1 4 4 C 1.54992 * 110.90864 * 123.62847 * 2 1 3 5 5 O 1.44382 * 103.48929 * 155.22388 * 4 2 1 6 6 C 1.43752 * 106.97480 * 319.93674 * 5 4 2 7 7 H 1.08996 * 109.87940 * 266.93728 * 6 5 4 8 8 C 1.50696 * 109.87675 * 145.93668 * 6 5 4 9 9 O 1.21282 * 120.00232 * 356.45750 * 8 6 5 10 10 N 1.34779 * 120.00003 * 176.18176 * 8 6 5 11 11 C 1.46501 * 119.99863 * 180.02562 * 10 8 6 12 12 C 1.53040 * 109.45922 * 275.02269 * 11 10 8 13 13 C 1.53194 * 109.31069 * 178.60149 * 12 11 10 14 14 N 1.46927 * 108.76334 * 54.65927 * 13 12 11 15 15 C 1.36938 * 120.62977 * 126.40410 * 14 13 12 16 16 H 1.07995 * 119.99984 * 207.66549 * 15 14 13 17 17 C 1.38813 * 120.00003 * 27.66150 * 15 14 13 18 18 N 1.31612 * 119.99798 * 17.37123 * 17 15 14 19 19 Si 1.86797 * 119.99838 * 197.36729 * 17 15 14 20 20 H 1.48499 * 109.47274 * 90.00378 * 19 17 15 21 21 H 1.48501 * 109.46986 * 210.00061 * 19 17 15 22 22 H 1.48505 * 109.47465 * 329.99827 * 19 17 15 23 23 C 1.46928 * 118.73946 * 306.38092 * 14 13 12 24 24 C 1.53045 * 109.45798 * 154.97359 * 11 10 8 25 25 C 1.54097 * 107.29059 * 26.51606 * 6 5 4 26 26 H 1.09003 * 109.46993 * 297.82227 * 1 2 3 27 27 H 1.09000 * 109.47168 * 57.82425 * 1 2 3 28 28 H 1.08998 * 109.46977 * 177.82531 * 1 2 3 29 29 H 1.09004 * 110.61735 * 36.72812 * 4 2 1 30 30 H 1.08992 * 110.62143 * 273.72393 * 4 2 1 31 31 H 0.96995 * 119.99765 * 0.02562 * 10 8 6 32 32 H 1.08997 * 109.46349 * 35.00122 * 11 10 8 33 33 H 1.08997 * 109.50155 * 298.56943 * 12 11 10 34 34 H 1.09002 * 109.49240 * 58.67168 * 12 11 10 35 35 H 1.08997 * 109.60200 * 294.87474 * 13 12 11 36 36 H 1.08999 * 109.58216 * 174.43610 * 13 12 11 37 37 H 0.97010 * 120.00039 * 180.02562 * 18 17 15 38 38 H 1.08999 * 109.58220 * 293.82101 * 23 14 13 39 39 H 1.09001 * 109.58625 * 173.39938 * 23 14 13 40 40 H 1.09006 * 109.49406 * 301.33351 * 24 11 10 41 41 H 1.08994 * 109.49821 * 61.43171 * 24 11 10 42 42 H 1.09002 * 110.49219 * 116.64397 * 25 6 5 43 43 H 1.08996 * 110.48835 * 239.28836 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 6 2.0832 -0.8018 1.2056 5 8 3.3942 -1.2140 0.7629 6 6 3.2718 -1.5884 -0.6196 7 1 3.0853 -2.6594 -0.6985 8 6 4.5349 -1.2325 -1.3605 9 8 5.4313 -0.6510 -0.7866 10 7 4.6708 -1.5654 -2.6595 11 6 5.8990 -1.2199 -3.3795 12 6 5.7941 0.2123 -3.9085 13 6 7.0936 0.5821 -4.6306 14 7 7.3621 -0.4252 -5.6660 15 6 7.5786 -0.0498 -6.9650 16 1 7.3366 -0.7275 -7.7704 17 6 8.1090 1.2016 -7.2467 18 7 8.7161 1.8870 -6.3012 19 14 7.9613 1.9129 -8.9676 20 1 6.7044 2.6965 -9.0732 21 1 9.1215 2.7995 -9.2380 22 1 7.9408 0.8081 -9.9598 23 6 7.3943 -1.8428 -5.2811 24 6 6.0915 -2.1852 -4.5515 25 6 2.0825 -0.8017 -1.2037 26 1 -0.3633 0.4797 0.9089 27 1 -0.3633 0.5472 -0.8698 28 1 -0.3633 -1.0269 -0.0390 29 1 1.4563 -1.6700 1.4092 30 1 2.1583 -0.1659 2.0876 31 1 3.9555 -2.0337 -3.1175 32 1 6.7502 -1.2958 -2.7030 33 1 4.9582 0.2828 -4.6045 34 1 5.6335 0.8968 -3.0756 35 1 7.9166 0.5999 -3.9162 36 1 6.9877 1.5630 -5.0938 37 1 9.0865 2.7618 -6.4978 38 1 8.2418 -2.0226 -4.6197 39 1 7.4869 -2.4617 -6.1736 40 1 6.1426 -3.2074 -4.1762 41 1 5.2528 -2.0919 -5.2413 42 1 2.4208 -0.1258 -1.9891 43 1 1.3247 -1.4848 -1.5872 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718559083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:03 Heat of formation + Delta-G solvation = -70.123319 kcal Electronic energy + Delta-G solvation = -22900.458959 eV Core-core repulsion = 19559.750974 eV Total energy + Delta-G solvation = -3340.707985 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.45444 -38.79596 -37.13698 -34.45872 -33.79114 -32.28201 -30.75536 -29.92168 -29.09974 -26.62885 -25.17815 -23.72721 -22.24667 -21.79998 -20.96047 -20.10449 -19.33895 -17.56946 -16.68529 -16.39268 -16.20568 -15.34194 -15.05822 -14.71948 -14.31610 -14.10400 -13.86718 -13.60334 -13.49764 -13.18831 -12.98458 -12.61703 -12.48217 -12.37691 -11.91451 -11.60914 -11.49135 -11.17101 -11.08945 -11.04325 -10.90525 -10.74132 -10.38720 -10.22624 -10.19927 -10.05201 -9.75326 -9.68793 -9.27381 -8.70269 -8.41681 -6.68956 -5.77881 -3.20846 2.75728 3.04056 3.38241 3.44821 3.46371 3.84755 4.18654 4.44104 4.49745 4.53322 4.72178 4.89072 5.01942 5.13428 5.24139 5.31243 5.35925 5.39961 5.43745 5.44871 5.46451 5.63796 5.70042 5.72144 5.83396 5.89796 6.08384 6.24233 6.35586 6.43213 6.54105 6.61684 6.65411 6.77841 6.92639 6.95608 7.38143 7.67633 7.73085 7.80029 8.42920 8.45528 9.21295 9.84730 10.41388 11.30566 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028344 B = 0.003567 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.619730 B = 7847.896388 C = 8192.007980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.127 4.127 3 H 0.089 0.911 4 C 0.048 3.952 5 O -0.347 6.347 6 C 0.060 3.940 7 H 0.091 0.909 8 C 0.508 3.492 9 O -0.520 6.520 10 N -0.723 5.723 11 C 0.151 3.849 12 C -0.146 4.146 13 C 0.173 3.827 14 N -0.593 5.593 15 C -0.255 4.255 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.901 5.901 19 Si 0.903 3.097 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.148 3.852 24 C -0.138 4.138 25 C -0.144 4.144 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.394 0.606 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.021 0.979 36 H 0.090 0.910 37 H 0.254 0.746 38 H 0.020 0.980 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.085 0.915 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.276 -7.571 10.805 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.146 4.146 3 H 0.107 0.893 4 C -0.029 4.029 5 O -0.265 6.265 6 C -0.001 4.001 7 H 0.109 0.891 8 C 0.292 3.708 9 O -0.394 6.394 10 N -0.375 5.375 11 C 0.048 3.952 12 C -0.186 4.186 13 C 0.047 3.953 14 N -0.316 5.316 15 C -0.385 4.385 16 H 0.084 0.916 17 C -0.196 4.196 18 N -0.545 5.545 19 Si 0.733 3.267 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.204 1.204 23 C 0.021 3.979 24 C -0.178 4.178 25 C -0.182 4.182 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.227 0.773 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.039 0.961 36 H 0.108 0.892 37 H 0.064 0.936 38 H 0.038 0.962 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.104 0.896 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.302 -6.988 11.335 21.049 hybrid contribution -0.630 0.211 -1.189 1.362 sum -16.932 -6.777 10.145 20.870 Atomic orbital electron populations 1.21722 0.93600 1.02169 1.02374 1.22749 0.96654 1.00688 0.94477 0.89274 1.23711 0.84089 0.97616 0.97445 1.89024 1.28897 1.86161 1.22372 1.22647 0.93776 0.99765 0.83933 0.89104 1.20379 0.88430 0.79669 0.82293 1.90735 1.41403 1.39901 1.67366 1.46254 1.20700 1.60059 1.10524 1.21054 0.85749 0.95692 0.92670 1.22562 1.02051 0.94712 0.99317 1.20764 0.90346 0.94713 0.89474 1.44116 1.81891 0.99665 1.05894 1.19190 1.35788 1.00515 0.82981 0.91589 1.25057 0.97644 0.99538 0.97398 1.70043 1.38236 1.13718 1.32476 0.86286 0.77202 0.78986 0.84254 1.21476 1.21761 1.20437 1.20841 0.92613 0.87691 0.96744 1.22336 1.01698 0.97120 0.96665 1.23027 0.96510 0.99526 0.99114 0.92138 0.92016 0.92302 0.91893 0.88645 0.77279 0.90026 0.92684 0.92925 0.96117 0.89224 0.93566 0.96170 0.92314 0.92601 0.91843 0.89639 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.19 37.16 0.34 -0.50 16 2 C -0.13 -1.07 3.72 -88.61 -0.33 -1.40 16 3 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 4 C 0.05 0.44 7.17 38.21 0.27 0.72 16 5 O -0.35 -4.78 10.74 -54.80 -0.59 -5.36 16 6 C 0.06 0.71 3.84 -27.31 -0.10 0.60 16 7 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 8 C 0.51 7.96 6.91 -10.99 -0.08 7.88 16 9 O -0.52 -10.81 16.19 -14.01 -0.23 -11.04 16 10 N -0.72 -10.17 5.06 -53.76 -0.27 -10.44 16 11 C 0.15 2.67 2.42 -67.89 -0.16 2.50 16 12 C -0.15 -2.94 5.65 -26.61 -0.15 -3.09 16 13 C 0.17 4.26 5.31 -3.71 -0.02 4.24 16 14 N -0.59 -14.86 2.99 -172.32 -0.52 -15.38 16 15 C -0.26 -6.98 9.59 -15.06 -0.14 -7.12 16 16 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 17 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 18 N -0.90 -26.44 11.19 55.49 0.62 -25.82 16 19 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.15 3.06 6.52 -3.71 -0.02 3.03 16 24 C -0.14 -2.29 5.55 -26.61 -0.15 -2.43 16 25 C -0.14 -1.29 6.21 -25.20 -0.16 -1.44 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.30 8.10 -51.93 -0.42 -0.12 16 29 H 0.06 0.45 8.05 -51.93 -0.42 0.04 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.39 4.18 8.60 -40.82 -0.35 3.83 16 32 H 0.08 1.65 7.57 -51.93 -0.39 1.25 16 33 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.09 2.46 6.04 -51.93 -0.31 2.14 16 37 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.08 0.86 7.69 -51.93 -0.40 0.46 16 43 H 0.09 0.55 7.83 -51.93 -0.41 0.15 16 LS Contribution 341.64 15.07 5.15 5.15 Total: -1.00 -33.44 341.64 -8.97 -42.40 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.31 Total: 0.89 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -0.79 Total: 2.97 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.17 Total: -51.64 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.82 Total: -16.40 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.44 -8.97 -42.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718559083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.720 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds