Wall clock time and date at job start Tue Mar 31 2020 06:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 110.43774 * 2 1 4 4 C 1.54101 * 110.59963 * 122.62144 * 2 1 3 5 5 O 1.43886 * 107.37832 * 116.83583 * 4 2 1 6 6 C 1.44386 * 106.89678 * 26.27191 * 5 4 2 7 7 H 1.08996 * 110.61546 * 78.74216 * 6 5 4 8 8 C 1.50697 * 110.61693 * 201.58377 * 6 5 4 9 9 O 1.21279 * 120.00151 * 1.41817 * 8 6 5 10 10 N 1.34773 * 119.99958 * 181.14645 * 8 6 5 11 11 C 1.46507 * 120.00349 * 179.97438 * 10 8 6 12 12 C 1.53037 * 109.46082 * 275.07099 * 11 10 8 13 13 C 1.53185 * 109.31463 * 178.61159 * 12 11 10 14 14 N 1.46931 * 108.77462 * 54.63344 * 13 12 11 15 15 C 1.36935 * 120.63234 * 126.41440 * 14 13 12 16 16 H 1.08003 * 120.00006 * 332.60622 * 15 14 13 17 17 C 1.38819 * 119.99976 * 152.60156 * 15 14 13 18 18 N 1.31614 * 119.99597 * 159.36468 * 17 15 14 19 19 Si 1.86793 * 119.99943 * 339.36284 * 17 15 14 20 20 H 1.48503 * 109.46887 * 92.90949 * 19 17 15 21 21 H 1.48499 * 109.46972 * 212.90786 * 19 17 15 22 22 H 1.48503 * 109.47541 * 332.90872 * 19 17 15 23 23 C 1.46923 * 118.73602 * 306.38767 * 14 13 12 24 24 C 1.53031 * 109.46154 * 154.99708 * 11 10 8 25 25 C 1.54809 * 110.48878 * 237.45546 * 2 1 3 26 26 H 1.08995 * 109.47500 * 182.54407 * 1 2 3 27 27 H 1.09002 * 109.47152 * 302.54643 * 1 2 3 28 28 H 1.09002 * 109.47272 * 62.54715 * 1 2 3 29 29 H 1.09000 * 109.88068 * 236.12831 * 4 2 1 30 30 H 1.09000 * 109.88000 * 357.12642 * 4 2 1 31 31 H 0.97003 * 120.00088 * 359.97438 * 10 8 6 32 32 H 1.09006 * 109.45383 * 35.02661 * 11 10 8 33 33 H 1.09007 * 109.49539 * 298.56355 * 12 11 10 34 34 H 1.08999 * 109.50217 * 58.65383 * 12 11 10 35 35 H 1.08999 * 109.58531 * 294.84623 * 13 12 11 36 36 H 1.09001 * 109.58986 * 174.41954 * 13 12 11 37 37 H 0.97000 * 119.99681 * 180.02562 * 18 17 15 38 38 H 1.09003 * 109.59165 * 293.82631 * 23 14 13 39 39 H 1.08995 * 109.58567 * 173.39575 * 23 14 13 40 40 H 1.09000 * 109.50080 * 301.33941 * 24 11 10 41 41 H 1.09000 * 109.50004 * 61.44019 * 24 11 10 42 42 H 1.09000 * 110.91163 * 102.11446 * 25 2 1 43 43 H 1.08999 * 110.90833 * 338.50461 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0721 -0.7776 1.2149 5 8 2.8036 -1.9089 0.7095 6 6 3.2681 -1.5527 -0.6104 7 1 4.1473 -0.9116 -0.5477 8 6 3.5707 -2.7885 -1.4179 9 8 3.3864 -3.8868 -0.9378 10 7 4.0410 -2.6732 -2.6756 11 6 4.3358 -3.8746 -3.4606 12 6 5.7480 -4.3643 -3.1323 13 6 6.0398 -5.6399 -3.9287 14 7 5.8110 -5.3699 -5.3547 15 6 6.7852 -5.6343 -6.2800 16 1 7.8254 -5.6129 -5.9901 17 6 6.4359 -5.9298 -7.5906 18 7 7.3194 -5.7862 -8.5555 19 14 4.7119 -6.5314 -7.9846 20 1 3.8539 -5.3740 -8.3443 21 1 4.7675 -7.4800 -9.1259 22 1 4.1438 -7.2186 -6.7970 23 6 4.5168 -4.8113 -5.7691 24 6 4.2421 -3.5449 -4.9520 25 6 2.0718 -0.7801 -1.2224 26 1 -0.3634 -1.0266 0.0456 27 1 -0.3633 0.5529 0.8663 28 1 -0.3634 0.4738 -0.9119 29 1 2.7373 -0.1395 1.7967 30 1 1.2442 -1.1156 1.8382 31 1 4.1843 -1.7947 -3.0612 32 1 3.6149 -4.6545 -3.2151 33 1 6.4716 -3.5944 -3.4006 34 1 5.8208 -4.5766 -2.0657 35 1 5.3756 -6.4379 -3.5967 36 1 7.0771 -5.9374 -3.7750 37 1 7.0752 -5.9924 -9.4713 38 1 3.7284 -5.5417 -5.5872 39 1 4.5492 -4.5620 -6.8297 40 1 3.2429 -3.1740 -5.1807 41 1 4.9798 -2.7828 -5.2032 42 1 2.4081 -0.0967 -2.0022 43 1 1.3205 -1.4690 -1.6084 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718559086.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:07 Heat of formation + Delta-G solvation = -64.548223 kcal Electronic energy + Delta-G solvation = -22865.754762 eV Core-core repulsion = 19525.288532 eV Total energy + Delta-G solvation = -3340.466231 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.51827 -39.01278 -37.45345 -34.62605 -33.84561 -32.32964 -30.97720 -30.42301 -29.52272 -26.70538 -25.27179 -23.83609 -22.87954 -21.78988 -20.88390 -20.27741 -19.57567 -17.61634 -17.16203 -16.63291 -16.11933 -15.37946 -15.22146 -15.05795 -14.59100 -14.16598 -13.96273 -13.82919 -13.65473 -13.10671 -13.06640 -12.90997 -12.87538 -12.38166 -12.03387 -12.00546 -11.79268 -11.57875 -11.35985 -11.16333 -10.99612 -10.83470 -10.56781 -10.29077 -10.16559 -10.05375 -9.84691 -9.56121 -9.45549 -8.84358 -8.64010 -7.00141 -5.95971 -3.31779 2.60288 2.87531 3.30081 3.48500 3.52007 3.78154 4.05415 4.31736 4.46839 4.51947 4.68464 4.73904 4.86972 4.95003 5.03323 5.17062 5.21324 5.26237 5.32247 5.35704 5.38958 5.49464 5.55917 5.61996 5.65437 5.81063 5.82328 6.02909 6.08210 6.15455 6.31260 6.38678 6.47123 6.56583 6.64035 6.64922 6.73726 6.91612 7.56693 7.95112 8.27404 8.32065 8.92925 9.70875 10.08563 11.20068 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036038 B = 0.003540 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.767723 B = 7907.172172 C = 8249.829034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 H 0.086 0.914 4 C 0.046 3.954 5 O -0.347 6.347 6 C 0.058 3.942 7 H 0.094 0.906 8 C 0.516 3.484 9 O -0.520 6.520 10 N -0.721 5.721 11 C 0.152 3.848 12 C -0.142 4.142 13 C 0.150 3.850 14 N -0.606 5.606 15 C -0.259 4.259 16 H 0.086 0.914 17 C 0.022 3.978 18 N -0.909 5.909 19 Si 0.881 3.119 20 H -0.289 1.289 21 H -0.303 1.303 22 H -0.270 1.270 23 C 0.129 3.871 24 C -0.140 4.140 25 C -0.140 4.140 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.397 0.603 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.026 0.974 36 H 0.066 0.934 37 H 0.263 0.737 38 H 0.028 0.972 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.924 14.847 15.538 24.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 H 0.105 0.895 4 C -0.031 4.031 5 O -0.265 6.265 6 C -0.003 4.003 7 H 0.112 0.888 8 C 0.300 3.700 9 O -0.395 6.395 10 N -0.373 5.373 11 C 0.048 3.952 12 C -0.182 4.182 13 C 0.024 3.976 14 N -0.330 5.330 15 C -0.387 4.387 16 H 0.104 0.896 17 C -0.176 4.176 18 N -0.552 5.552 19 Si 0.712 3.288 20 H -0.216 1.216 21 H -0.231 1.231 22 H -0.195 1.195 23 C 0.003 3.997 24 C -0.180 4.180 25 C -0.178 4.178 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.230 0.770 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.045 0.955 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.962 13.784 15.839 24.165 hybrid contribution -0.873 0.424 -0.624 1.153 sum -12.834 14.208 15.216 24.456 Atomic orbital electron populations 1.21828 0.93648 1.02524 1.02160 1.22536 0.97386 1.00053 0.94491 0.89515 1.23370 0.95876 0.87955 0.95873 1.89066 1.71784 1.36981 1.28636 1.23007 0.98273 0.94297 0.84719 0.88792 1.20112 0.77490 0.90261 0.82109 1.90733 1.51148 1.27634 1.69987 1.46187 1.66614 1.10504 1.14016 1.21012 0.97526 0.86339 0.90282 1.22389 0.95760 1.00256 0.99801 1.20901 0.99772 0.93114 0.83809 1.44412 1.13487 1.72430 1.02689 1.18939 0.88296 1.42356 0.89148 0.89613 1.25286 0.97118 0.99407 0.95821 1.69834 1.35019 1.50507 0.99811 0.86972 0.85731 0.78709 0.77392 1.21637 1.23100 1.19471 1.21309 0.88274 0.91944 0.98195 1.22344 1.00974 1.01089 0.93550 1.23213 0.97273 0.99164 0.98185 0.92039 0.92214 0.92111 0.92095 0.89382 0.76962 0.89873 0.91772 0.92214 0.95649 0.91532 0.92763 0.95458 0.90473 0.92234 0.91088 0.89253 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.93 37.15 0.33 -0.53 16 2 C -0.13 -0.83 3.64 -89.10 -0.32 -1.16 16 3 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 4 C 0.05 0.39 7.37 37.73 0.28 0.67 16 5 O -0.35 -4.49 10.81 -54.30 -0.59 -5.08 16 6 C 0.06 0.63 3.76 -26.83 -0.10 0.53 16 7 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 8 C 0.52 7.40 7.16 -10.99 -0.08 7.32 16 9 O -0.52 -9.97 16.23 -13.51 -0.22 -10.19 16 10 N -0.72 -9.24 5.08 -53.77 -0.27 -9.51 16 11 C 0.15 2.44 2.42 -67.89 -0.16 2.28 16 12 C -0.14 -2.46 5.65 -26.62 -0.15 -2.61 16 13 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 14 N -0.61 -14.35 2.77 -172.32 -0.48 -14.82 16 15 C -0.26 -7.20 10.04 -15.06 -0.15 -7.35 16 16 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 17 C 0.02 0.65 5.23 -17.43 -0.09 0.55 16 18 N -0.91 -27.70 13.97 55.49 0.78 -26.93 16 19 Si 0.88 22.24 24.34 -169.99 -4.14 18.10 16 20 H -0.29 -6.93 6.62 56.52 0.37 -6.56 16 21 H -0.30 -7.80 7.11 56.52 0.40 -7.39 16 22 H -0.27 -6.75 6.64 56.52 0.38 -6.37 16 23 C 0.13 2.75 4.20 -3.71 -0.02 2.74 16 24 C -0.14 -2.31 5.55 -26.61 -0.15 -2.46 16 25 C -0.14 -1.11 6.13 -24.72 -0.15 -1.26 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.67 7.70 -51.93 -0.40 0.27 16 31 H 0.40 3.82 8.60 -40.82 -0.35 3.47 16 32 H 0.08 1.50 7.57 -51.93 -0.39 1.11 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.03 0.59 7.08 -51.93 -0.37 0.22 16 39 H 0.08 1.79 4.50 -51.93 -0.23 1.55 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.78 7.78 -51.93 -0.40 0.38 16 LS Contribution 335.37 15.07 5.05 5.05 Total: -1.00 -33.96 335.37 -7.90 -41.87 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.25 Total: -0.22 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -0.79 Total: 1.74 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: 0.02 Total: -51.26 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.81 Total: -15.27 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.14 Total: 18.10 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.96 -7.90 -41.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718559086.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.683 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds