Wall clock time and date at job start Tue Mar 31 2020 07:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.50704 * 120.00245 * 2 1 4 4 C 1.53004 * 109.46741 * 294.99702 * 3 2 1 5 5 C 1.52995 * 109.46904 * 180.02562 * 4 3 2 6 6 C 1.50707 * 109.47104 * 179.97438 * 5 4 3 7 7 H 1.08001 * 119.99612 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00062 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99987 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99941 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47018 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47289 * 119.99667 * 10 8 6 13 13 H 1.48494 * 109.46764 * 239.99912 * 10 8 6 14 14 N 1.28005 * 119.99827 * 179.97438 * 2 1 3 15 15 N 1.40102 * 120.00188 * 0.02562 * 14 2 1 16 16 C 1.34779 * 120.00143 * 179.97438 * 15 14 2 17 17 O 1.21297 * 119.99861 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.99737 * 180.02562 * 16 15 14 19 19 H 1.08999 * 110.83241 * 62.19645 * 18 16 15 20 20 C 1.54813 * 110.90922 * 298.54535 * 18 16 15 21 21 C 1.54098 * 104.30472 * 220.99089 * 20 18 16 22 22 O 1.43744 * 107.29564 * 357.90152 * 21 20 18 23 23 C 1.44373 * 106.97248 * 26.51652 * 22 21 20 24 24 H 1.09008 * 110.62369 * 78.59828 * 23 22 21 25 25 C 1.53004 * 110.61774 * 201.43484 * 23 22 21 26 26 H 1.08999 * 109.47303 * 270.00600 * 1 2 3 27 27 H 1.09001 * 109.46703 * 30.00409 * 1 2 3 28 28 H 1.08991 * 109.47210 * 150.00539 * 1 2 3 29 29 H 1.08999 * 109.47147 * 54.99401 * 3 2 1 30 30 H 1.08995 * 109.47247 * 174.99782 * 3 2 1 31 31 H 1.09008 * 109.47000 * 299.99938 * 4 3 2 32 32 H 1.08995 * 109.47186 * 60.00041 * 4 3 2 33 33 H 1.08996 * 109.47489 * 299.99479 * 5 4 3 34 34 H 1.09005 * 109.47178 * 59.99935 * 5 4 3 35 35 H 0.96996 * 120.00014 * 179.97438 * 9 8 6 36 36 H 0.96995 * 119.99565 * 0.02562 * 15 14 2 37 37 H 1.09002 * 110.48794 * 102.24634 * 20 18 16 38 38 H 1.09002 * 110.48657 * 339.73056 * 20 18 16 39 39 H 1.08999 * 109.88182 * 117.33024 * 21 20 18 40 40 H 1.09008 * 109.87958 * 238.32904 * 21 20 18 41 41 H 1.09001 * 109.46802 * 58.54554 * 25 23 22 42 42 H 1.08997 * 109.47077 * 178.54723 * 25 23 22 43 43 H 1.08999 * 109.47143 * 298.54966 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 1.9877 2.0515 -1.3074 5 6 2.7532 3.3762 -1.3078 6 6 2.4849 4.1111 -2.5958 7 1 1.8339 3.6765 -3.3399 8 6 3.0714 5.3377 -2.8247 9 7 3.8646 5.8666 -1.9188 10 14 2.7383 6.2490 -4.4210 11 1 1.8186 5.4463 -5.2665 12 1 2.1149 7.5628 -4.1202 13 1 4.0169 6.4620 -5.1454 14 7 2.1470 -1.1086 0.0005 15 7 1.4465 -2.3219 0.0005 16 6 2.1204 -3.4891 0.0005 17 8 3.3334 -3.4891 0.0010 18 6 1.3668 -4.7942 -0.0001 19 1 0.7618 -4.8920 -0.9015 20 6 0.4916 -4.9273 1.2699 21 6 0.6613 -6.3983 1.6968 22 8 1.5078 -7.0310 0.7224 23 6 2.3364 -5.9971 0.1491 24 1 3.1583 -5.7476 0.8202 25 6 2.8716 -6.4312 -1.2170 26 1 -0.3634 0.0001 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5137 29 1 1.9318 1.9145 0.8417 30 1 3.3288 1.1079 0.0896 31 1 2.3166 1.4420 -2.1492 32 1 0.9195 2.2487 -1.3970 33 1 2.4248 3.9859 -0.4661 34 1 3.8215 3.1785 -1.2183 35 1 4.2776 6.7294 -2.0800 36 1 0.4766 -2.3218 -0.0003 37 1 -0.5522 -4.7154 1.0379 38 1 0.8508 -4.2591 2.0526 39 1 1.1279 -6.4472 2.6807 40 1 -0.3106 -6.8912 1.7227 41 1 2.0359 -6.6520 -1.8811 42 1 3.4725 -5.6282 -1.6437 43 1 3.4874 -7.3229 -1.0994 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842548739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:19 Heat of formation + Delta-G solvation = -66.254736 kcal Electronic energy + Delta-G solvation = -21621.072025 eV Core-core repulsion = 18280.531795 eV Total energy + Delta-G solvation = -3340.540231 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.71242 -38.95508 -37.54588 -34.74389 -33.30752 -32.65151 -31.89899 -31.10802 -28.68441 -27.46380 -26.66458 -23.88128 -22.77050 -22.14264 -20.57759 -20.31834 -19.46768 -17.85853 -16.68548 -16.37984 -16.16008 -15.84410 -15.54924 -15.13004 -14.55112 -14.28291 -14.16909 -14.03931 -13.71820 -13.68119 -12.85486 -12.68038 -12.43932 -12.37993 -12.08545 -11.85026 -11.76658 -11.57438 -11.50106 -11.36611 -11.18317 -10.85856 -10.72012 -10.54824 -10.20244 -10.07739 -9.91557 -9.70520 -9.40192 -9.12423 -8.66282 -8.35578 -6.00546 -4.02888 1.81354 2.39231 2.70951 3.30640 3.38118 3.38350 3.41960 3.97056 4.17638 4.24487 4.45176 4.52566 4.62836 4.73167 4.76397 4.89793 5.03196 5.06371 5.14039 5.23523 5.29550 5.29987 5.35562 5.45535 5.51655 5.72012 5.79536 5.81350 5.91806 5.95041 5.99677 6.40308 6.48257 6.64156 6.79628 6.99621 7.07591 7.51008 7.66788 7.80687 7.99412 8.35896 8.41344 9.04316 9.61275 11.10809 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034996 B = 0.002483 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.892710 B =11274.155160 C =11565.128412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.120 3.880 3 C -0.067 4.067 4 C -0.102 4.102 5 C 0.020 3.980 6 C -0.520 4.520 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.252 5.252 15 N -0.589 5.589 16 C 0.540 3.460 17 O -0.502 6.502 18 C -0.139 4.139 19 H 0.116 0.884 20 C -0.150 4.150 21 C 0.050 3.950 22 O -0.372 6.372 23 C 0.095 3.905 24 H 0.086 0.914 25 C -0.146 4.146 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.260 0.740 36 H 0.381 0.619 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.765 -22.599 7.234 26.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.074 4.074 3 C -0.106 4.106 4 C -0.141 4.141 5 C -0.017 4.017 6 C -0.558 4.558 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.534 5.534 10 Si 0.719 3.281 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.210 1.210 14 N -0.056 5.056 15 N -0.331 5.331 16 C 0.326 3.674 17 O -0.374 6.374 18 C -0.162 4.162 19 H 0.134 0.866 20 C -0.188 4.188 21 C -0.027 4.027 22 O -0.291 6.291 23 C 0.038 3.962 24 H 0.104 0.896 25 C -0.203 4.203 26 H 0.101 0.899 27 H 0.113 0.887 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.036 0.964 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.220 0.780 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.922 -23.258 7.223 25.937 hybrid contribution -1.636 1.125 -0.801 2.141 sum -10.559 -22.133 6.422 25.350 Atomic orbital electron populations 1.21416 0.93241 1.04142 1.03388 1.25523 0.94472 0.94401 0.92988 1.20722 1.00093 0.88640 1.01164 1.21635 1.00663 0.98391 0.93440 1.19115 0.95451 0.89938 0.97161 1.21273 1.28362 1.03340 1.02866 0.92680 1.25024 0.95197 0.97587 0.96687 1.69969 1.31285 1.17969 1.34185 0.86553 0.78063 0.79702 0.83786 1.19790 1.21028 1.21012 1.74716 1.24036 0.90934 1.15947 1.47035 1.08367 1.03681 1.74056 1.20042 0.88102 0.83193 0.76088 1.90737 1.13526 1.86833 1.46273 1.23027 0.98606 0.93290 1.01290 0.86609 1.22992 1.00815 0.98433 0.96602 1.23100 0.95463 0.91495 0.92657 1.88908 1.52997 1.31653 1.55591 1.22991 0.92298 0.84296 0.96659 0.89616 1.21792 1.01583 1.02684 0.94263 0.89934 0.88711 0.92121 0.89628 0.89990 0.93098 0.92964 0.96360 0.96313 0.93037 0.77971 0.89399 0.89982 0.91946 0.89364 0.91925 0.90257 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.46 36.01 0.34 -1.28 16 2 C 0.12 1.67 6.55 -78.91 -0.52 1.16 16 3 C -0.07 -1.07 5.60 -27.88 -0.16 -1.23 16 4 C -0.10 -1.98 5.03 -26.73 -0.13 -2.11 16 5 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 6 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 7 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 10 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 N -0.25 -3.98 10.93 35.60 0.39 -3.59 16 15 N -0.59 -7.26 6.04 31.22 0.19 -7.08 16 16 C 0.54 6.94 7.17 -10.99 -0.08 6.86 16 17 O -0.50 -8.64 16.07 5.54 0.09 -8.55 16 18 C -0.14 -1.22 2.96 -89.64 -0.27 -1.49 16 19 H 0.12 0.82 8.06 -51.93 -0.42 0.40 16 20 C -0.15 -0.97 6.54 -25.20 -0.16 -1.13 16 21 C 0.05 0.34 7.70 37.73 0.29 0.63 16 22 O -0.37 -3.67 11.23 -35.23 -0.40 -4.07 16 23 C 0.10 0.95 3.03 -25.55 -0.08 0.87 16 24 H 0.09 0.97 7.54 -51.92 -0.39 0.58 16 25 C -0.15 -1.34 9.66 37.16 0.36 -0.98 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.09 0.96 6.91 -51.93 -0.36 0.60 16 28 H 0.06 0.50 6.31 -51.93 -0.33 0.17 16 29 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 31 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 32 H 0.05 0.93 7.01 -51.93 -0.36 0.57 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.38 3.35 6.38 -182.60 -1.17 2.18 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.57 7.85 -51.93 -0.41 0.16 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.45 8.14 -51.92 -0.42 0.03 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 355.36 15.07 5.36 5.36 Total: -1.00 -34.11 355.36 -7.65 -41.76 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -8.04 Total: -2.72 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -0.95 Total: -11.62 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 1.31 Total: -36.64 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.31 Total: -12.62 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.11 -7.65 -41.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842548739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.490 kcal (2) G-P(sol) polarization free energy of solvation -34.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds