Wall clock time and date at job start Tue Mar 31 2020 07:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.50705 * 119.99897 * 2 1 4 4 C 1.52997 * 109.46723 * 294.99437 * 3 2 1 5 5 C 1.53002 * 109.47033 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47423 * 180.02562 * 5 4 3 7 7 H 1.08007 * 119.99955 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00270 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00408 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00080 * 180.02562 * 8 6 5 11 11 H 1.48490 * 109.47326 * 59.99807 * 10 8 6 12 12 H 1.48501 * 109.47134 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47084 * 299.99508 * 10 8 6 14 14 N 1.28013 * 120.00256 * 179.97438 * 2 1 3 15 15 N 1.40106 * 119.99622 * 0.02562 * 14 2 1 16 16 C 1.34772 * 119.99620 * 179.97438 * 15 14 2 17 17 O 1.21301 * 120.00530 * 359.97438 * 16 15 14 18 18 C 1.50705 * 119.99845 * 180.02562 * 16 15 14 19 19 H 1.08996 * 110.43786 * 26.98434 * 18 16 15 20 20 C 1.54815 * 110.48632 * 149.53000 * 18 16 15 21 21 C 1.54994 * 102.08830 * 139.55683 * 20 18 16 22 22 O 1.44377 * 103.49161 * 322.97029 * 21 20 18 23 23 C 1.43739 * 106.97570 * 40.06679 * 22 21 20 24 24 H 1.09002 * 109.88511 * 92.90890 * 23 22 21 25 25 C 1.53000 * 109.88197 * 214.06035 * 23 22 21 26 26 H 1.09003 * 109.47261 * 270.00173 * 1 2 3 27 27 H 1.08999 * 109.46956 * 30.00425 * 1 2 3 28 28 H 1.09005 * 109.46763 * 150.00216 * 1 2 3 29 29 H 1.08993 * 109.47073 * 54.99407 * 3 2 1 30 30 H 1.08995 * 109.47036 * 174.99684 * 3 2 1 31 31 H 1.09001 * 109.47605 * 300.00354 * 4 3 2 32 32 H 1.09008 * 109.47288 * 60.00416 * 4 3 2 33 33 H 1.09001 * 109.47238 * 300.00608 * 5 4 3 34 34 H 1.08995 * 109.46856 * 60.00167 * 5 4 3 35 35 H 0.96993 * 120.00602 * 180.02562 * 9 8 6 36 36 H 0.96997 * 120.00140 * 359.97438 * 15 14 2 37 37 H 1.09004 * 110.90290 * 257.74780 * 20 18 16 38 38 H 1.08997 * 110.91174 * 21.35625 * 20 18 16 39 39 H 1.09000 * 110.62349 * 81.47894 * 21 20 18 40 40 H 1.08999 * 110.61495 * 204.31234 * 21 20 18 41 41 H 1.08998 * 109.47791 * 174.39136 * 25 23 22 42 42 H 1.08997 * 109.46849 * 294.39560 * 25 23 22 43 43 H 1.09003 * 109.46619 * 54.39104 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2606 1.3052 0.0000 4 6 1.9876 2.0515 -1.3074 5 6 2.7521 3.3768 -1.3072 6 6 2.4828 4.1123 -2.5947 7 1 1.8319 3.6777 -3.3389 8 6 3.0683 5.3395 -2.8230 9 7 3.8613 5.8686 -1.9171 10 14 2.7339 6.2514 -4.4186 11 1 1.2785 6.5202 -4.5396 12 1 3.4760 7.5378 -4.4185 13 1 3.1811 5.4217 -5.5661 14 7 2.1472 -1.1086 0.0005 15 7 1.4466 -2.3219 0.0005 16 6 2.1205 -3.4891 0.0005 17 8 3.3335 -3.4891 0.0000 18 6 1.3670 -4.7942 -0.0001 19 1 0.3887 -4.6687 -0.4639 20 6 2.1789 -5.8883 -0.7354 21 6 1.9389 -7.1289 0.1621 22 8 1.9311 -6.5817 1.4981 23 6 1.2211 -5.3334 1.4362 24 1 0.1679 -5.4940 1.6665 25 6 1.8279 -4.3399 2.4290 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8901 -0.5138 29 1 1.9317 1.9145 0.8417 30 1 3.3288 1.1080 0.0896 31 1 2.3164 1.4421 -2.1492 32 1 0.9193 2.2487 -1.3971 33 1 2.4229 3.9861 -0.4654 34 1 3.8204 3.1800 -1.2174 35 1 4.2729 6.7321 -2.0775 36 1 0.4766 -2.3219 0.0005 37 1 1.7885 -6.0533 -1.7397 38 1 3.2375 -5.6310 -0.7685 39 1 0.9789 -7.5903 -0.0694 40 1 2.7480 -7.8498 0.0447 41 1 1.3515 -3.3672 2.3069 42 1 1.6671 -4.6982 3.4457 43 1 2.8977 -4.2465 2.2415 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842548740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:23 Heat of formation + Delta-G solvation = -61.878188 kcal Electronic energy + Delta-G solvation = -21828.878723 eV Core-core repulsion = 18488.528274 eV Total energy + Delta-G solvation = -3340.350449 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.88519 -38.87541 -37.48777 -34.70948 -33.26168 -32.63723 -31.86110 -31.13147 -28.64910 -27.41562 -26.57922 -23.93883 -22.67789 -22.56414 -20.43501 -20.16951 -19.29270 -17.57294 -16.99493 -16.34958 -16.15233 -16.07369 -15.57178 -15.21319 -14.54048 -14.45676 -14.07730 -13.85225 -13.67355 -13.22615 -12.71323 -12.64895 -12.53157 -12.40826 -12.08664 -11.83421 -11.71577 -11.49314 -11.38773 -11.35547 -11.26289 -10.81686 -10.71348 -10.58064 -10.29278 -10.04229 -9.85377 -9.68962 -9.38454 -9.13947 -8.63234 -8.34236 -5.99475 -4.02046 1.83961 2.43005 2.72022 3.33289 3.38028 3.40138 3.42612 3.98006 4.16686 4.37081 4.45784 4.61064 4.64757 4.73347 4.80840 4.90490 4.95977 5.05742 5.09987 5.20984 5.31354 5.34442 5.36321 5.46811 5.59991 5.75355 5.81093 5.82900 5.93679 5.96967 6.01780 6.42149 6.48244 6.65526 6.80828 7.02718 7.08805 7.56068 7.67172 7.81771 8.00277 8.39403 8.42213 9.04714 9.61925 11.11795 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037770 B = 0.002530 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.144418 B =11065.656800 C =11261.921503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.118 3.882 3 C -0.066 4.066 4 C -0.102 4.102 5 C 0.021 3.979 6 C -0.522 4.522 7 H 0.054 0.946 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 N -0.251 5.251 15 N -0.591 5.591 16 C 0.543 3.457 17 O -0.500 6.500 18 C -0.141 4.141 19 H 0.103 0.897 20 C -0.143 4.143 21 C 0.049 3.951 22 O -0.367 6.367 23 C 0.093 3.907 24 H 0.079 0.921 25 C -0.167 4.167 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.261 0.739 36 H 0.380 0.620 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.063 0.937 40 H 0.098 0.902 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.831 -23.227 6.233 26.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.075 4.075 3 C -0.106 4.106 4 C -0.141 4.141 5 C -0.016 4.016 6 C -0.560 4.560 7 H 0.072 0.928 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.055 5.055 15 N -0.334 5.334 16 C 0.329 3.671 17 O -0.372 6.372 18 C -0.164 4.164 19 H 0.121 0.879 20 C -0.181 4.181 21 C -0.028 4.028 22 O -0.287 6.287 23 C 0.035 3.965 24 H 0.097 0.903 25 C -0.224 4.224 26 H 0.101 0.899 27 H 0.112 0.888 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.036 0.964 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.219 0.781 37 H 0.105 0.895 38 H 0.118 0.882 39 H 0.081 0.919 40 H 0.116 0.884 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.890 -23.737 6.469 26.159 hybrid contribution -1.736 0.938 -1.173 2.296 sum -10.626 -22.799 5.296 25.705 Atomic orbital electron populations 1.21415 0.93266 1.04102 1.03380 1.25512 0.94445 0.94408 0.93147 1.20712 1.00091 0.88669 1.01128 1.21634 1.00650 0.98381 0.93462 1.19101 0.95448 0.89919 0.97119 1.21198 1.28520 1.03360 1.02925 0.92796 1.25017 0.95179 0.97567 0.96668 1.69946 1.31208 1.17994 1.34265 0.86669 0.78296 0.79046 0.84046 1.20284 1.21289 1.20269 1.74719 1.24034 0.90933 1.15814 1.47121 1.08282 1.03717 1.74268 1.19962 0.88260 0.83177 0.75666 1.90726 1.13578 1.86607 1.46251 1.22840 1.00866 0.93714 0.98979 0.87891 1.23200 1.02830 0.92931 0.99145 1.23558 1.01820 0.95850 0.81558 1.88925 1.76941 1.34456 1.28331 1.22578 0.96450 0.85057 0.92464 0.90292 1.22142 1.03305 0.97569 0.99385 0.89940 0.88756 0.92135 0.89650 0.90010 0.93121 0.92985 0.96374 0.96328 0.92919 0.78054 0.89499 0.88206 0.91902 0.88396 0.91269 0.91281 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.46 36.01 0.34 -1.28 16 2 C 0.12 1.66 6.55 -78.91 -0.52 1.15 16 3 C -0.07 -1.07 5.60 -27.88 -0.16 -1.23 16 4 C -0.10 -1.99 5.03 -26.73 -0.13 -2.12 16 5 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 6 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 7 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 9 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 10 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 N -0.25 -3.96 10.93 35.60 0.39 -3.57 16 15 N -0.59 -7.31 5.66 31.22 0.18 -7.13 16 16 C 0.54 7.08 4.87 -10.98 -0.05 7.03 16 17 O -0.50 -8.81 15.32 5.54 0.08 -8.73 16 18 C -0.14 -1.23 3.43 -90.24 -0.31 -1.54 16 19 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 20 C -0.14 -1.20 6.65 -24.72 -0.16 -1.36 16 21 C 0.05 0.36 7.72 38.21 0.29 0.65 16 22 O -0.37 -3.83 11.19 -35.23 -0.39 -4.22 16 23 C 0.09 0.82 4.05 -26.15 -0.11 0.72 16 24 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 25 C -0.17 -1.70 8.41 37.16 0.31 -1.39 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.09 0.96 6.91 -51.93 -0.36 0.61 16 28 H 0.06 0.50 6.31 -51.93 -0.33 0.17 16 29 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.08 1.44 8.11 -51.93 -0.42 1.01 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.94 7.01 -51.92 -0.36 0.57 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 36 H 0.38 3.33 6.39 -182.60 -1.17 2.16 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.10 1.09 6.93 -51.93 -0.36 0.73 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.68 7.09 -51.93 -0.37 0.31 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 1.02 7.06 -51.93 -0.37 0.65 16 LS Contribution 349.99 15.07 5.27 5.27 Total: -1.00 -34.56 349.99 -7.72 -42.28 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -7.92 Total: -2.01 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -1.04 Total: -12.35 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 1.30 Total: -36.75 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.31 Total: -12.95 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.56 -7.72 -42.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842548740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.602 kcal (2) G-P(sol) polarization free energy of solvation -34.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds