Wall clock time and date at job start Tue Mar 31 2020 07:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.50698 * 120.00163 * 2 1 4 4 C 1.52997 * 109.47495 * 295.00051 * 3 2 1 5 5 C 1.52999 * 109.47694 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47408 * 179.97438 * 5 4 3 7 7 H 1.08006 * 120.00013 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00084 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99986 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99909 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47350 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47463 * 119.99618 * 10 8 6 13 13 H 1.48496 * 109.47100 * 239.99744 * 10 8 6 14 14 N 1.28019 * 120.00116 * 179.97438 * 2 1 3 15 15 N 1.40096 * 119.99717 * 0.02562 * 14 2 1 16 16 C 1.34782 * 119.99794 * 180.02562 * 15 14 2 17 17 O 1.21299 * 119.99650 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.99797 * 179.97438 * 16 15 14 19 19 H 1.08996 * 110.45960 * 337.53351 * 18 16 15 20 20 C 1.54511 * 110.50911 * 214.92689 * 18 16 15 21 21 C 1.54478 * 104.06106 * 241.35702 * 20 18 16 22 22 O 1.44420 * 104.80633 * 23.97985 * 21 20 18 23 23 C 1.44787 * 105.29472 * 319.45327 * 22 21 20 24 24 H 1.08997 * 110.42359 * 281.77306 * 23 22 21 25 25 C 1.53010 * 110.48822 * 159.32474 * 23 22 21 26 26 H 1.08999 * 109.46868 * 90.00018 * 1 2 3 27 27 H 1.09001 * 109.47531 * 209.99769 * 1 2 3 28 28 H 1.08998 * 109.47571 * 330.00381 * 1 2 3 29 29 H 1.09000 * 109.47236 * 174.99307 * 3 2 1 30 30 H 1.09007 * 109.47082 * 55.00042 * 3 2 1 31 31 H 1.09000 * 109.46778 * 59.99170 * 4 3 2 32 32 H 1.09007 * 109.46949 * 300.00073 * 4 3 2 33 33 H 1.08996 * 109.46933 * 300.00599 * 5 4 3 34 34 H 1.09006 * 109.46699 * 60.00114 * 5 4 3 35 35 H 0.96997 * 119.99774 * 180.02562 * 9 8 6 36 36 H 0.97000 * 120.00421 * 359.97438 * 15 14 2 37 37 H 1.08992 * 110.51249 * 359.97438 * 20 18 16 38 38 H 1.08999 * 110.50587 * 122.71670 * 20 18 16 39 39 H 1.09000 * 110.37052 * 142.81271 * 21 20 18 40 40 H 1.09005 * 110.37192 * 265.14701 * 21 20 18 41 41 H 1.09003 * 109.46778 * 310.68016 * 25 23 22 42 42 H 1.09000 * 109.46472 * 70.67502 * 25 23 22 43 43 H 1.08996 * 109.47083 * 190.68100 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 1.9876 2.0516 -1.3073 5 6 2.7521 3.3769 -1.3071 6 6 2.4838 4.1119 -2.5950 7 1 1.8333 3.6770 -3.3395 8 6 3.0694 5.3390 -2.8234 9 7 3.8619 5.8683 -1.9170 10 14 2.7362 6.2504 -4.4195 11 1 1.8175 5.4471 -5.2657 12 1 2.1117 7.5637 -4.1187 13 1 4.0150 6.4646 -5.1434 14 7 2.1470 -1.1087 0.0005 15 7 1.4465 -2.3219 0.0005 16 6 2.1204 -3.4891 0.0015 17 8 3.3334 -3.4891 0.0020 18 6 1.3669 -4.7942 0.0021 19 1 0.3590 -4.6520 0.3919 20 6 2.1234 -5.8558 0.8317 21 6 2.4446 -6.9704 -0.1885 22 8 2.4359 -6.3092 -1.4725 23 6 1.3174 -5.3913 -1.4218 24 1 0.3799 -5.9251 -1.5770 25 6 1.4827 -4.2873 -2.4683 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 3.3287 1.1078 0.0897 30 1 1.9316 1.9145 0.8419 31 1 0.9193 2.2488 -1.3969 32 1 2.3164 1.4422 -2.1492 33 1 2.4229 3.9860 -0.4652 34 1 3.8204 3.1800 -1.2173 35 1 4.2736 6.7318 -2.0776 36 1 0.4765 -2.3219 0.0005 37 1 3.0426 -5.4368 1.2409 38 1 1.4886 -6.2401 1.6300 39 1 3.4276 -7.3966 0.0121 40 1 1.6798 -7.7464 -0.1561 41 1 2.4833 -3.8616 -2.3923 42 1 1.3411 -4.7069 -3.4643 43 1 0.7417 -3.5073 -2.2937 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842548741.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:27 Heat of formation + Delta-G solvation = -62.461809 kcal Electronic energy + Delta-G solvation = -21923.109670 eV Core-core repulsion = 18582.733913 eV Total energy + Delta-G solvation = -3340.375757 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.80637 -38.78517 -37.41126 -34.68027 -33.24214 -32.59467 -31.86628 -31.11123 -28.63821 -27.40817 -26.59700 -23.91373 -22.65352 -22.44064 -20.40418 -20.18918 -19.27636 -17.69144 -16.82564 -16.30425 -16.11525 -15.89595 -15.70289 -15.13969 -14.57315 -14.34057 -14.19934 -13.67396 -13.64061 -13.21182 -12.74001 -12.59388 -12.43684 -12.37068 -12.16221 -11.83230 -11.69196 -11.49275 -11.41410 -11.33040 -11.27611 -10.83640 -10.68786 -10.53046 -10.22562 -10.03736 -9.84557 -9.69808 -9.37316 -9.10113 -8.61055 -8.34047 -5.99010 -4.01238 1.86996 2.46060 2.75497 3.31803 3.39463 3.43136 3.49702 4.03002 4.19545 4.38393 4.46597 4.63883 4.66116 4.72592 4.87732 4.91137 4.96805 5.03094 5.09498 5.20096 5.36351 5.37123 5.40284 5.46009 5.59115 5.71385 5.79239 5.83943 5.92254 5.99455 6.05184 6.42219 6.47764 6.66993 6.82352 7.06055 7.10525 7.60074 7.68668 7.82896 8.01160 8.42620 8.43608 9.06011 9.62837 11.12384 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029754 B = 0.002708 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.824734 B =10338.249039 C =10655.815542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.117 3.883 3 C -0.066 4.066 4 C -0.102 4.102 5 C 0.020 3.980 6 C -0.520 4.520 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.250 5.250 15 N -0.591 5.591 16 C 0.541 3.459 17 O -0.497 6.497 18 C -0.139 4.139 19 H 0.102 0.898 20 C -0.142 4.142 21 C 0.048 3.952 22 O -0.362 6.362 23 C 0.090 3.910 24 H 0.083 0.917 25 C -0.160 4.160 26 H 0.085 0.915 27 H 0.059 0.941 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.260 0.740 36 H 0.379 0.621 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.239 -23.586 6.332 26.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.076 4.076 3 C -0.106 4.106 4 C -0.141 4.141 5 C -0.017 4.017 6 C -0.558 4.558 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.534 5.534 10 Si 0.719 3.281 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.210 1.210 14 N -0.054 5.054 15 N -0.334 5.334 16 C 0.326 3.674 17 O -0.369 6.369 18 C -0.162 4.162 19 H 0.121 0.879 20 C -0.180 4.180 21 C -0.029 4.029 22 O -0.281 6.281 23 C 0.032 3.968 24 H 0.101 0.899 25 C -0.217 4.217 26 H 0.104 0.896 27 H 0.077 0.923 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.036 0.964 34 H 0.037 0.963 35 H 0.069 0.931 36 H 0.219 0.781 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.243 -24.048 6.194 26.497 hybrid contribution -1.739 0.879 -0.614 2.043 sum -10.982 -23.168 5.579 26.239 Atomic orbital electron populations 1.21376 0.93268 1.03440 1.03775 1.25501 0.94416 0.94410 0.93314 1.20727 1.00092 0.88636 1.01126 1.21610 1.00685 0.98343 0.93430 1.19113 0.95456 0.89966 0.97131 1.21274 1.28364 1.03296 1.02856 0.92684 1.25023 0.95202 0.97598 0.96679 1.69971 1.31369 1.17909 1.34185 0.86556 0.78059 0.79697 0.83804 1.19781 1.21041 1.21020 1.74710 1.24089 0.90958 1.15686 1.47133 1.08213 1.03691 1.74358 1.20042 0.88288 0.83168 0.75854 1.90736 1.13572 1.86616 1.45936 1.22810 1.00747 0.93602 0.99085 0.87943 1.22973 1.01833 0.94838 0.98335 1.23388 1.02547 0.94422 0.82517 1.89272 1.49547 1.55400 1.33909 1.22928 0.90888 0.90697 0.92317 0.89942 1.21970 1.03954 0.97029 0.98776 0.89610 0.92271 0.89238 0.90056 0.89718 0.93000 0.93130 0.96390 0.96336 0.93051 0.78134 0.88857 0.89724 0.88626 0.92080 0.90669 0.91052 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.13 36.00 0.33 -1.27 16 2 C 0.12 1.66 6.55 -78.91 -0.52 1.15 16 3 C -0.07 -1.08 5.59 -27.89 -0.16 -1.24 16 4 C -0.10 -1.99 5.04 -26.73 -0.13 -2.12 16 5 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 6 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 7 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 9 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 10 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 N -0.25 -4.01 10.93 35.60 0.39 -3.62 16 15 N -0.59 -7.42 5.87 31.22 0.18 -7.24 16 16 C 0.54 7.23 4.89 -10.98 -0.05 7.17 16 17 O -0.50 -9.09 16.09 5.54 0.09 -9.00 16 18 C -0.14 -1.22 3.42 -90.20 -0.31 -1.53 16 19 H 0.10 0.54 8.11 -51.93 -0.42 0.12 16 20 C -0.14 -1.15 6.59 -25.16 -0.17 -1.32 16 21 C 0.05 0.39 7.63 37.93 0.29 0.68 16 22 O -0.36 -4.19 11.36 -35.23 -0.40 -4.59 16 23 C 0.09 0.82 3.85 -25.95 -0.10 0.72 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 25 C -0.16 -1.66 8.56 37.16 0.32 -1.34 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.46 6.31 -51.93 -0.33 0.13 16 28 H 0.09 0.83 8.12 -51.93 -0.42 0.41 16 29 H 0.08 1.44 8.11 -51.93 -0.42 1.02 16 30 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.05 0.94 7.90 -51.93 -0.41 0.53 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.38 3.36 6.36 -182.60 -1.16 2.19 16 37 H 0.09 0.98 7.05 -51.93 -0.37 0.61 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 1.05 7.19 -51.93 -0.37 0.67 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.63 7.83 -51.93 -0.41 0.22 16 LS Contribution 353.63 15.07 5.33 5.33 Total: -1.00 -35.28 353.63 -7.82 -43.11 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -8.08 Total: -2.35 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -1.05 Total: -12.10 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 1.31 Total: -36.99 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.31 Total: -13.59 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.28 -7.82 -43.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842548741.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.356 kcal (2) G-P(sol) polarization free energy of solvation -35.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds