Wall clock time and date at job start Tue Mar 31 2020 07:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 110.33004 * 2 1 4 4 O 1.44424 * 110.37485 * 237.75292 * 2 1 3 5 5 C 1.44416 * 105.27855 * 200.65272 * 4 2 1 6 6 C 1.54484 * 104.80280 * 40.51400 * 5 4 2 7 7 C 1.54474 * 110.37435 * 122.25133 * 2 1 3 8 8 H 1.09002 * 110.51184 * 261.45439 * 7 2 1 9 9 C 1.50701 * 110.51068 * 24.16947 * 7 2 1 10 10 O 1.21291 * 120.00531 * 84.02537 * 9 7 2 11 11 N 1.34784 * 119.99564 * 264.02182 * 9 7 2 12 12 N 1.40094 * 119.99626 * 179.97438 * 11 9 7 13 13 C 1.28013 * 119.99779 * 180.02562 * 12 11 9 14 14 C 1.50704 * 120.00019 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47379 * 239.99835 * 14 13 12 16 16 C 1.53001 * 109.47014 * 0.02562 * 14 13 12 17 17 C 1.53000 * 109.47124 * 119.99949 * 14 13 12 18 18 C 1.50694 * 109.47407 * 180.02562 * 17 14 13 19 19 H 1.08005 * 120.00093 * 0.02562 * 18 17 14 20 20 C 1.37879 * 120.00517 * 179.97438 * 18 17 14 21 21 N 1.31517 * 119.99513 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00303 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47162 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46878 * 120.00416 * 22 20 18 25 25 H 1.48500 * 109.47136 * 240.00456 * 22 20 18 26 26 H 1.08999 * 109.46704 * 176.07428 * 1 2 3 27 27 H 1.08999 * 109.46632 * 296.07453 * 1 2 3 28 28 H 1.08999 * 109.47223 * 56.07316 * 1 2 3 29 29 H 1.08994 * 110.37419 * 159.33870 * 5 4 2 30 30 H 1.08991 * 110.37458 * 281.68385 * 5 4 2 31 31 H 1.08997 * 110.51334 * 94.65848 * 6 5 4 32 32 H 1.09000 * 110.51311 * 217.24268 * 6 5 4 33 33 H 0.97001 * 120.00229 * 359.97438 * 11 9 7 34 34 H 1.07996 * 120.00352 * 0.02562 * 13 12 11 35 35 H 1.08997 * 109.46977 * 59.99946 * 15 14 13 36 36 H 1.09000 * 109.47563 * 179.97438 * 15 14 13 37 37 H 1.08998 * 109.47215 * 300.00228 * 15 14 13 38 38 H 1.08994 * 109.47060 * 59.99586 * 16 14 13 39 39 H 1.09000 * 109.47089 * 180.02562 * 16 14 13 40 40 H 1.08997 * 109.46882 * 299.99772 * 16 14 13 41 41 H 1.09005 * 109.47262 * 300.00114 * 17 14 13 42 42 H 1.08998 * 109.46981 * 60.00071 * 17 14 13 43 43 H 0.96998 * 119.99793 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0222 0.0000 4 8 2.0329 -0.7224 -1.1451 5 6 3.3874 -1.0861 -0.8007 6 6 3.3179 -1.5064 0.6842 7 6 2.0678 -0.7728 1.2247 8 1 2.3430 -0.0818 2.0216 9 6 1.0445 -1.7649 1.7141 10 8 0.9652 -2.8593 1.1973 11 7 0.2174 -1.4360 2.7262 12 7 -0.7343 -2.3581 3.1808 13 6 -1.5202 -2.0457 4.1418 14 6 -2.5443 -3.0373 4.6305 15 6 -3.9459 -2.4470 4.4640 16 6 -2.4339 -4.3278 3.8159 17 6 -2.2925 -3.3444 6.1080 18 6 -3.3162 -4.3365 6.5966 19 1 -4.0707 -4.7110 5.9207 20 6 -3.2889 -4.7670 7.9062 21 7 -2.3698 -4.3113 8.7291 22 14 -4.5583 -5.9962 8.5119 23 1 -5.4757 -6.3496 7.3988 24 1 -3.8706 -7.2210 8.9939 25 1 -5.3375 -5.3957 9.6243 26 1 -0.3633 -1.0253 -0.0704 27 1 -0.3632 0.4517 0.9231 28 1 -0.3633 0.5736 -0.8527 29 1 3.7242 -1.9206 -1.4157 30 1 4.0525 -0.2313 -0.9224 31 1 3.1956 -2.5860 0.7703 32 1 4.2121 -1.1806 1.2156 33 1 0.2811 -0.5610 3.1399 34 1 -1.4499 -1.0711 4.6018 35 1 -4.1254 -2.2282 3.4114 36 1 -4.6867 -3.1644 4.8171 37 1 -4.0243 -1.5278 5.0446 38 1 -1.4353 -4.7482 3.9349 39 1 -3.1749 -5.0449 4.1691 40 1 -2.6131 -4.1094 2.7632 41 1 -1.2939 -3.7650 6.2267 42 1 -2.3708 -2.4252 6.6886 43 1 -2.3508 -4.6139 9.6505 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842563250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:38 Heat of formation + Delta-G solvation = -56.917890 kcal Electronic energy + Delta-G solvation = -22450.134386 eV Core-core repulsion = 19109.999032 eV Total energy + Delta-G solvation = -3340.135355 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.69050 -38.55531 -37.43933 -35.23393 -33.00352 -32.39940 -31.80259 -30.63994 -27.09965 -26.69150 -26.37065 -24.25702 -22.93246 -22.37800 -21.33956 -20.13170 -18.20567 -17.41812 -16.86015 -16.44694 -16.23485 -15.82090 -15.59006 -14.91778 -14.61461 -14.07864 -13.73326 -13.40745 -13.09884 -12.87980 -12.68332 -12.51022 -12.28120 -12.07335 -11.90238 -11.51094 -11.34887 -11.27923 -11.22172 -11.00971 -10.92428 -10.79900 -10.60256 -10.26240 -10.17956 -10.05351 -9.80200 -9.58290 -9.41329 -8.96500 -8.47711 -8.37423 -6.02219 -4.02973 2.13625 2.64282 2.97166 3.30916 3.39210 3.42623 3.57655 4.12434 4.30709 4.44873 4.49544 4.73973 4.81076 4.98903 5.01056 5.10289 5.16260 5.26260 5.32377 5.35838 5.48747 5.52728 5.61906 5.83219 5.88327 5.93471 5.95375 6.06324 6.38025 6.53337 6.54896 6.65348 6.80113 7.04066 7.09228 7.20633 7.27650 7.58866 7.67704 7.81028 7.96599 8.37186 8.63372 9.01511 9.60408 11.09477 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037596 B = 0.003086 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.586225 B = 9071.250801 C = 9292.339187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.089 3.911 3 H 0.081 0.919 4 O -0.364 6.364 5 C 0.049 3.951 6 C -0.143 4.143 7 C -0.140 4.140 8 H 0.104 0.896 9 C 0.542 3.458 10 O -0.501 6.501 11 N -0.594 5.594 12 N -0.249 5.249 13 C 0.108 3.892 14 C -0.014 4.014 15 C -0.123 4.123 16 C -0.118 4.118 17 C 0.039 3.961 18 C -0.509 4.509 19 H 0.063 0.937 20 C 0.056 3.944 21 N -0.896 5.896 22 Si 0.890 3.110 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.376 0.624 34 H 0.100 0.900 35 H 0.035 0.965 36 H 0.075 0.925 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.037 0.963 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.872 12.325 -14.274 20.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.031 3.969 3 H 0.099 0.901 4 O -0.282 6.282 5 C -0.028 4.028 6 C -0.181 4.181 7 C -0.163 4.163 8 H 0.122 0.878 9 C 0.328 3.672 10 O -0.372 6.372 11 N -0.335 5.335 12 N -0.050 5.050 13 C -0.107 4.107 14 C -0.017 4.017 15 C -0.181 4.181 16 C -0.175 4.175 17 C 0.001 3.999 18 C -0.547 4.547 19 H 0.081 0.919 20 C -0.145 4.145 21 N -0.536 5.536 22 Si 0.718 3.282 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.213 0.787 34 H 0.117 0.883 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.144 10.840 -15.408 20.941 hybrid contribution -0.424 0.734 1.623 1.831 sum 8.720 11.574 -13.785 20.000 Atomic orbital electron populations 1.21966 0.92824 1.04095 1.02694 1.22854 0.95745 0.94807 0.83494 0.90093 1.89195 1.27196 1.74500 1.37343 1.23390 0.84529 0.99926 0.94986 1.23006 0.95841 1.03120 0.96110 1.22844 0.95701 0.97730 1.00062 0.87769 1.19941 0.80654 0.88200 0.78376 1.90718 1.68876 1.22571 1.55053 1.47246 1.34867 1.15367 1.36027 1.74631 1.00435 1.15755 1.14207 1.26693 0.93936 0.99010 0.91063 1.19820 0.90646 0.91903 0.99356 1.21712 0.96175 1.01126 0.99078 1.21597 1.02139 0.96579 0.97198 1.19137 0.97589 0.97024 0.86118 1.21211 1.13634 1.24592 0.95291 0.91894 1.25003 0.95809 0.96611 0.97040 1.69971 1.34043 1.44203 1.05368 0.86563 0.81565 0.81232 0.78825 1.19635 1.21124 1.21137 0.90872 0.91116 0.91175 0.88669 0.92123 0.88666 0.89767 0.78669 0.88299 0.94619 0.90582 0.93184 0.93054 0.91766 0.94363 0.96303 0.96275 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 8.58 37.16 0.32 -1.33 16 2 C 0.09 0.87 3.83 -25.96 -0.10 0.77 16 3 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 4 O -0.36 -4.36 11.34 -35.23 -0.40 -4.76 16 5 C 0.05 0.43 7.63 37.94 0.29 0.72 16 6 C -0.14 -1.34 6.60 -25.06 -0.17 -1.51 16 7 C -0.14 -1.39 3.44 -90.11 -0.31 -1.70 16 8 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 9 C 0.54 7.96 4.89 -10.98 -0.05 7.91 16 10 O -0.50 -9.71 16.06 5.55 0.09 -9.62 16 11 N -0.59 -8.45 5.94 31.22 0.19 -8.27 16 12 N -0.25 -4.47 9.70 32.67 0.32 -4.15 16 13 C 0.11 1.85 9.56 -13.87 -0.13 1.72 16 14 C -0.01 -0.28 0.75 -155.66 -0.12 -0.40 16 15 C -0.12 -2.14 8.20 37.16 0.30 -1.84 16 16 C -0.12 -2.37 7.45 37.16 0.28 -2.10 16 17 C 0.04 0.95 4.02 -27.89 -0.11 0.84 16 18 C -0.51 -13.39 7.65 -34.44 -0.26 -13.65 16 19 H 0.06 1.60 5.68 -52.48 -0.30 1.30 16 20 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 21 N -0.90 -26.05 13.29 55.43 0.74 -25.32 16 22 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H 0.07 1.01 7.05 -51.93 -0.37 0.65 16 27 H 0.07 0.62 7.90 -51.93 -0.41 0.21 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 1.14 6.95 -51.93 -0.36 0.78 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.38 3.92 8.63 -182.60 -1.58 2.34 16 34 H 0.10 1.43 8.00 -52.49 -0.42 1.01 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 1.41 6.62 -51.93 -0.34 1.07 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 1.10 8.06 -51.93 -0.42 0.68 16 39 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 40 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 LS Contribution 348.55 15.07 5.25 5.25 Total: -1.00 -33.26 348.55 -7.32 -40.58 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -8.32 Total: -0.65 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -0.16 Total: -9.12 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 1.24 Total: -37.73 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.31 Total: -14.39 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.26 -7.32 -40.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842563250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.338 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds