Wall clock time and date at job start Tue Mar 31 2020 06:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 110.31912 * 2 1 4 4 C 1.54750 * 110.36132 * 237.78174 * 2 1 3 5 5 C 1.53467 * 103.62847 * 217.24599 * 4 2 1 6 6 C 1.52653 * 115.82775 * 129.61954 * 5 4 2 7 7 C 1.53993 * 86.72796 * 93.22315 * 6 5 4 8 8 N 1.46503 * 113.57451 * 139.18693 * 7 6 5 9 9 C 1.34783 * 119.99449 * 156.42116 * 8 7 6 10 10 O 1.21590 * 119.99935 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99768 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99872 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46840 * 180.02562 * 12 11 9 14 14 C 1.50703 * 109.46912 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99776 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00001 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00114 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99955 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46725 * 60.00489 * 18 16 14 20 20 H 1.48505 * 109.46988 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47116 * 300.00464 * 18 16 14 22 22 C 1.52810 * 115.76821 * 230.96901 * 5 4 2 23 23 C 1.53436 * 105.20898 * 0.31455 * 5 4 2 24 24 O 1.44517 * 110.45522 * 122.27554 * 2 1 3 25 25 H 1.09005 * 109.47396 * 182.22405 * 1 2 3 26 26 H 1.08997 * 109.47535 * 302.21924 * 1 2 3 27 27 H 1.08994 * 109.47676 * 62.22053 * 1 2 3 28 28 H 1.08991 * 110.59848 * 98.70869 * 4 2 1 29 29 H 1.08997 * 110.72226 * 335.83839 * 4 2 1 30 30 H 1.08999 * 113.66961 * 338.76763 * 6 5 4 31 31 H 1.09003 * 113.75853 * 207.69006 * 6 5 4 32 32 H 1.09000 * 113.57944 * 269.89953 * 7 6 5 33 33 H 0.96992 * 120.00655 * 336.41842 * 8 7 6 34 34 H 0.97000 * 119.99708 * 359.97438 * 11 9 8 35 35 H 1.09002 * 109.47391 * 59.99686 * 12 11 9 36 36 H 1.09001 * 109.46813 * 299.99742 * 12 11 9 37 37 H 1.09001 * 109.47194 * 299.99493 * 13 12 11 38 38 H 1.08992 * 109.47399 * 59.99666 * 13 12 11 39 39 H 0.97000 * 120.00354 * 180.02562 * 17 16 14 40 40 H 1.08998 * 113.67029 * 152.29306 * 22 5 4 41 41 H 1.09003 * 113.72016 * 21.16690 * 22 5 4 42 42 H 1.09004 * 110.42185 * 141.95538 * 23 5 4 43 43 H 1.09006 * 110.42834 * 264.42836 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9084 1.0222 0.0000 4 6 2.0684 -0.7735 -1.2274 5 6 3.3073 -1.4977 -0.6835 6 6 3.3858 -2.9936 -0.9775 7 6 4.2039 -2.6155 -2.2261 8 7 5.3385 -3.5081 -2.4757 9 6 5.8459 -3.6215 -3.7192 10 8 5.3618 -2.9832 -4.6338 11 7 6.8900 -4.4423 -3.9487 12 6 7.4420 -4.5650 -5.3002 13 6 8.6103 -5.5529 -5.2861 14 6 9.1776 -5.6796 -6.6764 15 1 8.7482 -5.1120 -7.4887 16 6 10.2457 -6.5194 -6.9113 17 7 10.7689 -7.2102 -5.9220 18 14 10.9485 -6.6771 -8.6348 19 1 11.4274 -5.3496 -9.0974 20 1 12.0825 -7.6358 -8.6212 21 1 9.8940 -7.1714 -9.5561 22 6 4.5908 -1.3178 -1.4930 23 6 3.3873 -1.1019 0.7968 24 8 2.0350 -0.7231 1.1448 25 1 -0.3634 -1.0269 0.0399 26 1 -0.3634 0.5479 0.8694 27 1 -0.3634 0.4789 -0.9091 28 1 2.3466 -0.0833 -2.0237 29 1 1.3305 -1.4918 -1.5847 30 1 2.4209 -3.4457 -1.2070 31 1 3.9530 -3.5575 -0.2370 32 1 3.5934 -2.4494 -3.1137 33 1 5.7245 -4.0175 -1.7461 34 1 7.2764 -4.9511 -3.2188 35 1 7.7937 -3.5905 -5.6389 36 1 6.6683 -4.9275 -5.9770 37 1 9.3841 -5.1908 -4.6091 38 1 8.2582 -6.5272 -4.9475 39 1 11.5205 -7.8007 -6.0871 40 1 5.4996 -1.4057 -0.8977 41 1 4.5855 -0.4354 -2.1329 42 1 3.7121 -1.9497 1.4001 43 1 4.0647 -0.2582 0.9290 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894130875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:20 Heat of formation + Delta-G solvation = -72.829059 kcal Electronic energy + Delta-G solvation = -21732.679458 eV Core-core repulsion = 18391.854144 eV Total energy + Delta-G solvation = -3340.825315 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.08036 -39.39736 -37.47410 -34.79108 -33.44567 -32.71151 -32.37544 -29.70832 -28.50101 -26.48077 -26.15974 -24.75919 -22.34611 -21.67954 -20.92395 -20.49215 -19.13409 -17.90069 -16.90202 -16.34621 -15.94979 -15.77803 -15.73014 -15.08509 -14.66110 -14.43137 -14.28957 -13.82349 -13.53817 -13.40417 -13.13113 -12.73528 -12.62234 -12.29460 -12.26577 -12.08164 -11.73134 -11.52301 -11.19038 -11.01016 -10.96370 -10.69295 -10.64232 -10.57020 -10.30288 -9.96299 -9.92461 -9.54217 -9.26730 -8.97869 -8.47788 -8.24528 -6.08625 -4.11304 3.06009 3.31816 3.35472 3.39283 3.50641 3.55728 4.06259 4.14022 4.25920 4.40205 4.55158 4.64171 4.69743 4.76261 4.86774 4.95333 5.17697 5.20441 5.26362 5.28335 5.40681 5.44182 5.48498 5.53301 5.60525 5.68243 5.76939 5.80583 5.85601 6.02669 6.31813 6.40471 6.53787 6.65898 6.78505 7.00834 7.25981 7.57405 7.63915 7.90428 8.26587 8.44656 8.93290 9.00893 9.53297 11.02978 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.059457 B = 0.002333 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.816721 B =11997.893101 C =12246.322856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 H 0.068 0.932 4 C -0.130 4.130 5 C -0.114 4.114 6 C -0.130 4.130 7 C 0.149 3.851 8 N -0.743 5.743 9 C 0.698 3.302 10 O -0.599 6.599 11 N -0.739 5.739 12 C 0.140 3.860 13 C 0.013 3.987 14 C -0.521 4.521 15 H 0.059 0.941 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.898 3.102 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.139 4.139 23 C 0.063 3.937 24 O -0.375 6.375 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.394 0.606 34 H 0.393 0.607 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.262 0.738 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.054 11.905 15.435 25.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.013 3.987 3 H 0.086 0.914 4 C -0.168 4.168 5 C -0.115 4.115 6 C -0.168 4.168 7 C 0.042 3.958 8 N -0.398 5.398 9 C 0.398 3.602 10 O -0.478 6.478 11 N -0.392 5.392 12 C 0.017 3.983 13 C -0.024 4.024 14 C -0.560 4.560 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.179 4.179 23 C -0.014 4.014 24 O -0.294 6.294 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.131 0.869 33 H 0.228 0.772 34 H 0.226 0.774 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.454 12.300 14.765 25.961 hybrid contribution 1.052 -0.606 -0.361 1.267 sum -16.402 11.694 14.405 24.764 Atomic orbital electron populations 1.21807 0.93248 1.02998 1.02389 1.23040 0.95242 0.95372 0.85058 0.91445 1.22780 0.96259 0.99609 0.98132 1.22277 0.96370 0.97021 0.95852 1.23313 1.01037 0.94839 0.97588 1.22294 0.87265 0.88912 0.97299 1.45151 1.36155 1.49319 1.09165 1.16136 0.80644 0.80603 0.82847 1.90878 1.63532 1.50244 1.43148 1.45553 1.33760 1.46623 1.13278 1.21587 0.96614 1.00525 0.79567 1.19319 0.91493 0.93533 0.98092 1.21018 1.15317 1.25623 0.94029 0.92273 1.24999 0.96622 0.95436 0.97279 1.69944 1.24459 1.27635 1.31324 0.86563 0.78551 0.77974 0.84386 1.20106 1.21268 1.20107 1.23460 0.96456 0.99565 0.98375 1.23234 0.84631 0.99852 0.93655 1.89161 1.27664 1.74465 1.38120 0.91716 0.91984 0.91078 0.89929 0.89997 0.90406 0.89279 0.86886 0.77203 0.77411 0.92815 0.92810 0.95996 0.95984 0.92813 0.89375 0.90593 0.88986 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.53 37.15 0.35 -0.60 16 2 C 0.07 0.55 3.94 -25.81 -0.10 0.45 16 3 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 4 C -0.13 -0.99 5.99 -25.57 -0.15 -1.14 16 5 C -0.11 -0.91 1.17 -154.33 -0.18 -1.09 16 6 C -0.13 -1.05 7.08 -26.39 -0.19 -1.24 16 7 C 0.15 1.60 4.09 -66.91 -0.27 1.33 16 8 N -0.74 -9.16 5.37 -57.68 -0.31 -9.47 16 9 C 0.70 12.15 8.57 -86.91 -0.74 11.41 16 10 O -0.60 -12.86 15.96 5.29 0.08 -12.78 16 11 N -0.74 -13.07 5.56 -65.22 -0.36 -13.43 16 12 C 0.14 3.03 5.61 -4.04 -0.02 3.01 16 13 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 14 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 15 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 18 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 22 C -0.14 -1.27 7.18 -26.31 -0.19 -1.46 16 23 C 0.06 0.50 7.07 37.38 0.26 0.77 16 24 O -0.37 -3.68 11.35 -35.23 -0.40 -4.08 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.59 7.79 -51.93 -0.40 0.19 16 29 H 0.08 0.60 7.54 -51.93 -0.39 0.21 16 30 H 0.08 0.63 7.89 -51.93 -0.41 0.22 16 31 H 0.09 0.62 7.96 -51.93 -0.41 0.21 16 32 H 0.11 1.45 7.50 -51.93 -0.39 1.06 16 33 H 0.39 3.75 8.72 -40.82 -0.36 3.39 16 34 H 0.39 5.93 8.49 -40.82 -0.35 5.59 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.74 7.90 -51.93 -0.41 0.33 16 42 H 0.09 0.65 7.86 -51.93 -0.41 0.24 16 43 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 LS Contribution 351.36 15.07 5.29 5.29 Total: -1.00 -32.83 351.36 -9.06 -41.89 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.30 Total: 3.27 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -1.79 Total: -1.68 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.06 Total: -48.33 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.32 Total: -16.86 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.83 -9.06 -41.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894130875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.936 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds