Wall clock time and date at job start Tue Mar 31 2020 06:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 110.32132 * 2 1 4 4 C 1.54748 * 110.45531 * 122.27781 * 2 1 3 5 5 C 1.53466 * 103.63052 * 142.68602 * 4 2 1 6 6 C 1.52661 * 115.82157 * 230.39742 * 5 4 2 7 7 C 1.53992 * 86.83389 * 217.23210 * 6 5 4 8 8 N 1.46496 * 113.58157 * 139.13632 * 7 6 5 9 9 C 1.34774 * 119.99902 * 154.99777 * 8 7 6 10 10 O 1.21589 * 120.00122 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99986 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00320 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47639 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47450 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00037 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00059 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99821 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00100 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47196 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47535 * 119.99964 * 18 16 14 21 21 H 1.48499 * 109.47551 * 240.00282 * 18 16 14 22 22 C 1.52847 * 115.91002 * 129.09522 * 5 4 2 23 23 C 1.53431 * 105.21193 * 359.69368 * 5 4 2 24 24 O 1.44520 * 110.36051 * 237.77917 * 2 1 3 25 25 H 1.08994 * 109.47090 * 180.76809 * 1 2 3 26 26 H 1.08998 * 109.46830 * 300.76589 * 1 2 3 27 27 H 1.08992 * 109.47107 * 60.76506 * 1 2 3 28 28 H 1.09000 * 110.59182 * 24.15449 * 4 2 1 29 29 H 1.08998 * 110.59533 * 261.22317 * 4 2 1 30 30 H 1.09002 * 113.67060 * 102.72488 * 6 5 4 31 31 H 1.09002 * 113.67439 * 331.73780 * 6 5 4 32 32 H 1.08999 * 113.57430 * 269.93092 * 7 6 5 33 33 H 0.96999 * 119.99694 * 335.00182 * 8 7 6 34 34 H 0.97008 * 120.00179 * 0.02562 * 11 9 8 35 35 H 1.09009 * 109.47232 * 300.00378 * 12 11 9 36 36 H 1.09005 * 109.47429 * 60.00107 * 12 11 9 37 37 H 1.08997 * 109.47225 * 300.00251 * 13 12 11 38 38 H 1.08998 * 109.47036 * 60.00119 * 13 12 11 39 39 H 0.97002 * 119.99662 * 179.97438 * 17 16 14 40 40 H 1.09010 * 113.58214 * 28.22354 * 22 5 4 41 41 H 1.08998 * 113.81283 * 257.18791 * 22 5 4 42 42 H 1.08995 * 110.42182 * 95.55309 * 23 5 4 43 43 H 1.08994 * 110.42632 * 217.91527 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9085 1.0222 0.0000 4 6 2.0708 -0.7743 1.2258 5 6 3.3085 -1.4982 0.6791 6 6 3.3872 -2.9945 0.9718 7 6 4.9036 -2.7933 1.1492 8 7 5.4670 -3.5451 2.2732 9 6 6.7709 -3.8860 2.2698 10 8 7.4797 -3.5691 1.3341 11 7 7.2892 -4.5782 3.3036 12 6 8.7066 -4.9483 3.3002 13 6 9.0346 -5.7227 4.5783 14 6 10.4929 -6.1029 4.5751 15 1 11.1229 -5.8200 3.7447 16 6 11.0231 -6.8109 5.6327 17 7 10.2561 -7.1549 6.6441 18 14 12.8305 -7.2827 5.6284 19 1 13.4698 -6.7822 4.3850 20 1 13.5022 -6.6803 6.8079 21 1 12.9563 -8.7611 5.6886 22 6 4.5954 -1.3223 1.4848 23 6 3.3859 -1.1015 -0.8010 24 8 2.0328 -0.7224 -1.1462 25 1 -0.3633 -1.0275 0.0138 26 1 -0.3633 0.5257 0.8830 27 1 -0.3633 0.5019 -0.8967 28 1 1.3324 -1.4929 1.5817 29 1 2.3506 -0.0845 2.0221 30 1 3.1256 -3.6215 0.1194 31 1 2.8747 -3.2888 1.8877 32 1 5.4710 -2.9205 0.2273 33 1 4.9016 -3.7977 3.0198 34 1 6.7236 -4.8314 4.0499 35 1 8.9168 -5.5739 2.4326 36 1 9.3175 -4.0467 3.2544 37 1 8.8244 -5.0975 5.4460 38 1 8.4239 -6.6244 4.6236 39 1 10.6290 -7.6533 7.3881 40 1 4.4243 -1.1421 2.5461 41 1 5.2983 -0.6161 1.0428 42 1 4.0629 -0.2576 -0.9337 43 1 3.7116 -1.9481 -1.4053 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894130876.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:24 Heat of formation + Delta-G solvation = -73.020909 kcal Electronic energy + Delta-G solvation = -21715.545731 eV Core-core repulsion = 18374.712097 eV Total energy + Delta-G solvation = -3340.833634 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.08010 -39.39948 -37.46535 -34.79264 -33.44195 -32.72112 -32.41212 -29.71915 -28.57035 -26.28595 -26.14479 -24.77350 -22.66116 -21.51227 -20.87793 -20.49976 -19.18737 -17.90014 -16.64661 -16.46310 -16.23722 -15.77607 -15.53753 -15.07307 -14.74138 -14.47236 -14.26351 -13.72767 -13.51136 -13.30641 -13.23237 -12.74563 -12.59314 -12.38739 -12.26876 -12.25653 -11.66785 -11.45352 -11.17576 -11.09316 -11.04390 -10.62265 -10.58131 -10.52876 -10.31803 -10.01020 -9.91137 -9.54916 -9.24003 -8.97801 -8.48720 -8.24695 -6.09241 -4.11645 3.06034 3.28640 3.36320 3.41922 3.51669 3.56277 4.03280 4.09689 4.31919 4.40561 4.54194 4.62985 4.68339 4.71109 4.83059 5.01679 5.16276 5.22633 5.26434 5.28007 5.41573 5.43579 5.44861 5.55176 5.59754 5.64860 5.76318 5.78494 5.86287 6.02114 6.31839 6.40496 6.52991 6.65645 6.78538 7.00763 7.25870 7.57587 7.63667 7.90297 8.26388 8.44482 8.93505 9.00832 9.53131 11.02482 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.061778 B = 0.002316 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.129095 B =12087.978429 C =12326.925044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 H 0.067 0.933 4 C -0.134 4.134 5 C -0.115 4.115 6 C -0.130 4.130 7 C 0.146 3.854 8 N -0.742 5.742 9 C 0.698 3.302 10 O -0.599 6.599 11 N -0.739 5.739 12 C 0.140 3.860 13 C 0.012 3.988 14 C -0.519 4.519 15 H 0.060 0.940 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.139 4.139 23 C 0.067 3.933 24 O -0.373 6.373 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.394 0.606 34 H 0.393 0.607 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.261 0.739 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.609 13.092 -9.738 26.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.085 0.915 4 C -0.171 4.171 5 C -0.116 4.116 6 C -0.168 4.168 7 C 0.040 3.960 8 N -0.397 5.397 9 C 0.398 3.602 10 O -0.478 6.478 11 N -0.392 5.392 12 C 0.017 3.983 13 C -0.025 4.025 14 C -0.558 4.558 15 H 0.078 0.922 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.725 3.275 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.178 4.178 23 C -0.009 4.009 24 O -0.292 6.292 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.132 0.868 33 H 0.228 0.772 34 H 0.226 0.774 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -20.001 13.220 -10.635 26.228 hybrid contribution 0.554 -0.496 1.123 1.347 sum -19.447 12.724 -9.513 25.111 Atomic orbital electron populations 1.21801 0.93308 1.02908 1.02376 1.23041 0.95201 0.95407 0.85271 0.91486 1.22846 0.96703 0.99490 0.98099 1.22308 0.95993 0.96995 0.96300 1.23298 0.95918 0.94910 1.02693 1.22329 0.92662 0.90110 0.90909 1.45131 1.09284 1.61372 1.23929 1.16133 0.81745 0.78940 0.83417 1.90879 1.59553 1.60921 1.36416 1.45552 1.13238 1.58789 1.21632 1.21588 0.76845 0.98820 1.01049 1.19330 0.97314 0.95031 0.90833 1.21097 0.94259 1.35284 1.05180 0.92151 1.25005 0.98229 0.95759 0.95410 1.69969 1.35583 1.39146 1.08674 0.86450 0.84816 0.78159 0.78100 1.19560 1.20959 1.20959 1.23481 0.95467 0.98344 1.00495 1.23114 0.84596 1.00179 0.93035 1.89181 1.27606 1.74435 1.38024 0.91778 0.91197 0.91933 0.90242 0.90248 0.90343 0.89303 0.86766 0.77205 0.77420 0.92793 0.92801 0.95992 0.95974 0.92932 0.89340 0.90627 0.91637 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.53 37.16 0.35 -0.55 16 2 C 0.07 0.52 3.94 -25.81 -0.10 0.42 16 3 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.13 -0.92 6.15 -25.57 -0.16 -1.08 16 5 C -0.12 -0.91 1.17 -154.31 -0.18 -1.09 16 6 C -0.13 -1.05 6.96 -26.39 -0.18 -1.24 16 7 C 0.15 1.57 4.12 -66.91 -0.28 1.29 16 8 N -0.74 -9.15 5.36 -57.68 -0.31 -9.46 16 9 C 0.70 12.14 8.57 -86.92 -0.74 11.40 16 10 O -0.60 -12.85 15.94 5.29 0.08 -12.76 16 11 N -0.74 -13.06 5.56 -65.23 -0.36 -13.42 16 12 C 0.14 3.03 5.61 -4.05 -0.02 3.00 16 13 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 14 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 15 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 18 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C -0.14 -1.26 7.10 -26.29 -0.19 -1.45 16 23 C 0.07 0.58 6.90 37.38 0.26 0.84 16 24 O -0.37 -3.75 11.35 -35.23 -0.40 -4.15 16 25 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.51 7.70 -51.93 -0.40 0.11 16 29 H 0.08 0.48 7.97 -51.93 -0.41 0.07 16 30 H 0.08 0.64 8.05 -51.93 -0.42 0.22 16 31 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 32 H 0.11 1.45 7.47 -51.93 -0.39 1.06 16 33 H 0.39 3.76 8.74 -40.82 -0.36 3.40 16 34 H 0.39 5.93 8.49 -40.82 -0.35 5.58 16 35 H 0.05 1.22 8.14 -51.92 -0.42 0.80 16 36 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.09 0.77 8.14 -51.92 -0.42 0.34 16 41 H 0.08 0.73 8.06 -51.93 -0.42 0.31 16 42 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 43 H 0.10 0.79 7.92 -51.93 -0.41 0.37 16 LS Contribution 351.95 15.07 5.30 5.30 Total: -1.00 -32.84 351.95 -9.10 -41.94 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.34 Total: 3.10 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -1.79 Total: -1.55 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.06 Total: -48.31 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.32 Total: -16.91 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.84 -9.10 -41.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894130876.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.081 kcal (2) G-P(sol) polarization free energy of solvation -32.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds