Wall clock time and date at job start Tue Mar 31 2020 06:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.50813 * 2 1 4 4 C 1.53103 * 109.50395 * 239.87028 * 2 1 3 5 5 C 1.53235 * 109.42975 * 181.69366 * 4 2 1 6 6 C 1.51324 * 108.64938 * 56.17844 * 5 4 2 7 7 O 1.20763 * 121.02232 * 127.40329 * 6 5 4 8 8 C 1.51907 * 117.88960 * 307.25478 * 6 5 4 9 9 N 1.46875 * 109.50370 * 120.08063 * 2 1 3 10 10 C 1.34782 * 120.71412 * 357.00273 * 9 2 1 11 11 O 1.21584 * 119.99663 * 5.56291 * 10 9 2 12 12 N 1.34768 * 119.99838 * 185.55550 * 10 9 2 13 13 C 1.46505 * 119.99994 * 175.03050 * 12 10 9 14 14 C 1.53001 * 109.47369 * 180.02562 * 13 12 10 15 15 C 1.52993 * 109.47015 * 299.99751 * 14 13 12 16 16 C 1.52993 * 109.47207 * 59.99785 * 14 13 12 17 17 C 1.50695 * 109.47119 * 180.02562 * 14 13 12 18 18 H 1.08000 * 119.99978 * 359.97438 * 17 14 13 19 19 C 1.37877 * 120.00225 * 179.97438 * 17 14 13 20 20 N 1.31516 * 119.99729 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 120.00167 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47175 * 60.00198 * 21 19 17 23 23 H 1.48506 * 109.47130 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47281 * 300.00109 * 21 19 17 25 25 H 1.09004 * 109.47256 * 299.92510 * 1 2 3 26 26 H 1.09007 * 109.47038 * 59.91983 * 1 2 3 27 27 H 1.08994 * 109.47501 * 179.91709 * 1 2 3 28 28 H 1.08993 * 109.47895 * 301.68094 * 4 2 1 29 29 H 1.08998 * 109.47728 * 61.70125 * 4 2 1 30 30 H 1.08993 * 109.60851 * 175.92907 * 5 4 2 31 31 H 1.09004 * 109.60393 * 296.43328 * 5 4 2 32 32 H 1.09002 * 109.98670 * 286.93180 * 8 6 5 33 33 H 1.08994 * 109.88045 * 165.85854 * 8 6 5 34 34 H 0.96996 * 120.00563 * 355.02765 * 12 10 9 35 35 H 1.08998 * 109.47168 * 59.99629 * 13 12 10 36 36 H 1.09002 * 109.46838 * 299.99825 * 13 12 10 37 37 H 1.09001 * 109.47348 * 60.00143 * 15 14 13 38 38 H 1.09007 * 109.47502 * 300.00038 * 15 14 13 39 39 H 1.08994 * 109.47480 * 179.97438 * 15 14 13 40 40 H 1.09001 * 109.47590 * 300.00342 * 16 14 13 41 41 H 1.09002 * 109.47280 * 60.00114 * 16 14 13 42 42 H 1.08999 * 109.47589 * 180.02562 * 16 14 13 43 43 H 0.96999 * 120.00190 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7244 -1.2482 5 6 3.5729 -0.7605 -1.2252 6 6 4.0223 -1.4137 0.0637 7 8 4.7956 -2.3413 0.0546 8 6 3.4726 -0.8635 1.3685 9 7 2.0204 -0.6939 1.1980 10 6 1.1594 -1.1604 2.1242 11 8 -0.0386 -1.0994 1.9259 12 7 1.6266 -1.6945 3.2700 13 6 0.6925 -2.1016 4.3226 14 6 1.4756 -2.6714 5.5071 15 6 2.2853 -3.8851 5.0465 16 6 2.4245 -1.6025 6.0527 17 6 0.5147 -3.0907 6.5896 18 1 -0.5482 -2.9631 6.4472 19 6 0.9925 -3.6372 7.7618 20 7 2.2869 -3.7922 7.9353 21 14 -0.1986 -4.1563 9.1039 22 1 -1.1200 -5.1933 8.5740 23 1 0.5615 -4.7095 10.2535 24 1 -0.9841 -2.9782 9.5514 25 1 -0.3634 0.5127 0.8907 26 1 -0.3633 0.5151 -0.8893 27 1 -0.3634 -1.0276 -0.0015 28 1 1.6538 -1.7431 -1.2614 29 1 1.7033 -0.1955 -2.1393 30 1 3.9380 -1.3378 -2.0746 31 1 3.9635 0.2560 -1.2757 32 1 3.9336 0.0990 1.5906 33 1 3.6703 -1.5648 2.1790 34 1 2.5812 -1.8095 3.3977 35 1 0.0161 -2.8627 3.9338 36 1 0.1159 -1.2368 4.6511 37 1 2.9803 -3.5823 4.2634 38 1 1.6092 -4.6467 4.6578 39 1 2.8436 -4.2908 5.8902 40 1 3.1196 -1.2996 5.2696 41 1 1.8477 -0.7378 6.3808 42 1 2.9828 -2.0086 6.8962 43 1 2.6231 -4.1770 8.7598 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922843706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:01 Heat of formation + Delta-G solvation = -52.013586 kcal Electronic energy + Delta-G solvation = -23440.620769 eV Core-core repulsion = 20100.698081 eV Total energy + Delta-G solvation = -3339.922688 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.79390 -39.22802 -37.11528 -35.97209 -33.99575 -32.62174 -31.22059 -30.47252 -27.22230 -25.71952 -25.61613 -24.95407 -24.49187 -22.08971 -20.49640 -19.34011 -18.76786 -17.75121 -16.44542 -15.84987 -15.80003 -15.59833 -15.18848 -14.99757 -14.64602 -14.50325 -13.77441 -13.51925 -13.36378 -12.88780 -12.69334 -12.67296 -12.40503 -12.21556 -12.01780 -11.70889 -11.36444 -11.30297 -11.20291 -11.16596 -10.84093 -10.71686 -10.38154 -10.18472 -10.04698 -9.62259 -9.34219 -8.99725 -8.78837 -8.65036 -8.39849 -8.19682 -6.00898 -4.11087 1.58692 2.78130 3.31086 3.35430 3.39054 3.45248 3.75300 4.18265 4.40256 4.47619 4.56558 4.57561 4.96029 5.00158 5.19650 5.25778 5.26111 5.34677 5.46007 5.65866 5.76212 5.82464 6.13152 6.23360 6.35637 6.36617 6.50756 6.71254 6.79223 6.82913 6.89629 7.03322 7.06938 7.08926 7.22583 7.38002 7.56631 7.70499 8.01679 8.12498 8.31561 8.40388 8.87692 8.95735 9.54617 11.00517 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028111 B = 0.004207 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.811888 B = 6654.277348 C = 7323.894449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.157 3.843 3 H 0.073 0.927 4 C -0.127 4.127 5 C -0.168 4.168 6 C 0.353 3.647 7 O -0.445 6.445 8 C 0.066 3.934 9 N -0.630 5.630 10 C 0.703 3.297 11 O -0.582 6.582 12 N -0.733 5.733 13 C 0.149 3.851 14 C 0.056 3.944 15 C -0.130 4.130 16 C -0.129 4.129 17 C -0.506 4.506 18 H 0.057 0.943 19 C 0.067 3.933 20 N -0.886 5.886 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.076 0.924 26 H 0.039 0.961 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.392 0.608 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.004 0.996 38 H 0.027 0.973 39 H 0.085 0.915 40 H 0.004 0.996 41 H 0.027 0.973 42 H 0.085 0.915 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.528 8.718 -15.984 18.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.053 3.947 3 H 0.091 0.909 4 C -0.165 4.165 5 C -0.206 4.206 6 C 0.226 3.774 7 O -0.315 6.315 8 C -0.059 4.059 9 N -0.371 5.371 10 C 0.405 3.595 11 O -0.460 6.460 12 N -0.390 5.390 13 C 0.027 3.973 14 C 0.055 3.945 15 C -0.188 4.188 16 C -0.187 4.187 17 C -0.544 4.544 18 H 0.075 0.925 19 C -0.135 4.135 20 N -0.524 5.524 21 Si 0.722 3.278 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.095 0.905 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.229 0.771 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.023 0.977 38 H 0.046 0.954 39 H 0.104 0.896 40 H 0.023 0.977 41 H 0.046 0.954 42 H 0.104 0.896 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.171 8.173 -15.933 18.186 hybrid contribution -0.004 -0.286 0.825 0.873 sum 3.167 7.887 -15.108 17.335 Atomic orbital electron populations 1.22187 0.91737 1.04231 1.00908 1.21132 0.96644 0.94435 0.82453 0.90867 1.22041 0.92944 1.02659 0.98898 1.22315 0.98003 1.03171 0.97120 1.25310 0.77531 0.81519 0.93038 1.90456 1.27902 1.23613 1.89576 1.22421 0.82549 1.03371 0.97550 1.47317 1.04035 1.62524 1.23272 1.15989 0.84893 0.78506 0.80122 1.90944 1.13558 1.63069 1.78466 1.45836 1.11189 1.65531 1.16401 1.21610 0.91174 0.98285 0.86278 1.18363 0.93422 0.92167 0.90554 1.21823 0.98626 0.98865 0.99443 1.21816 0.98491 0.97800 1.00571 1.20928 0.92696 1.40950 0.99848 0.92458 1.24877 0.95128 0.95374 0.98100 1.69795 1.11736 1.44734 1.26180 0.86627 0.81009 0.78957 0.81222 1.20283 1.21353 1.20291 0.90487 0.94277 0.90591 0.90832 0.89433 0.89129 0.88096 0.88093 0.87720 0.77139 0.92807 0.92884 0.97729 0.95406 0.89597 0.97724 0.95414 0.89619 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 7.58 37.16 0.28 -1.35 16 2 C 0.16 1.62 3.39 -67.67 -0.23 1.39 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.13 -1.05 5.37 -26.56 -0.14 -1.19 16 5 C -0.17 -1.30 6.14 -27.46 -0.17 -1.47 16 6 C 0.35 3.90 6.88 -28.13 -0.19 3.71 16 7 O -0.44 -6.51 17.90 6.00 0.11 -6.40 16 8 C 0.07 0.72 6.58 -4.22 -0.03 0.69 16 9 N -0.63 -8.16 2.97 -171.55 -0.51 -8.67 16 10 C 0.70 12.08 8.21 -86.92 -0.71 11.37 16 11 O -0.58 -11.46 11.73 5.29 0.06 -11.40 16 12 N -0.73 -13.19 4.86 -65.22 -0.32 -13.51 16 13 C 0.15 3.17 4.51 -4.04 -0.02 3.15 16 14 C 0.06 1.29 0.50 -155.67 -0.08 1.21 16 15 C -0.13 -2.98 8.07 37.15 0.30 -2.68 16 16 C -0.13 -2.90 8.08 37.15 0.30 -2.59 16 17 C -0.51 -13.22 8.01 -34.44 -0.28 -13.49 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 20 N -0.89 -23.63 9.35 55.43 0.52 -23.11 16 21 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 H 0.08 1.13 6.70 -51.93 -0.35 0.78 16 26 H 0.04 0.37 8.14 -51.92 -0.42 -0.05 16 27 H 0.08 1.12 6.77 -51.93 -0.35 0.77 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 1.26 5.83 -51.93 -0.30 0.96 16 34 H 0.39 6.54 3.72 -40.82 -0.15 6.38 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 38 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 39 H 0.09 2.17 6.07 -51.93 -0.32 1.86 16 40 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 43 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 330.66 15.07 4.98 4.98 Total: -1.00 -29.62 330.66 -7.92 -37.54 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -6.69 Total: 4.46 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -1.06 Total: 0.40 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -0.31 Total: -45.29 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: 0.17 Total: -17.80 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.62 -7.92 -37.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922843706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.469 kcal (2) G-P(sol) polarization free energy of solvation -29.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds