Wall clock time and date at job start Tue Mar 31 2020 06:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.55572 * 2 1 4 4 C 1.55002 * 110.61516 * 236.95453 * 2 1 3 5 5 C 1.54811 * 102.09014 * 204.47403 * 4 2 1 6 6 C 1.54101 * 104.18959 * 20.88309 * 5 4 2 7 7 H 1.09005 * 110.00098 * 242.53211 * 6 5 4 8 8 C 1.52993 * 109.87938 * 121.45476 * 6 5 4 9 9 C 1.50698 * 109.47177 * 175.71237 * 8 6 5 10 10 O 1.21279 * 120.00140 * 0.02562 * 9 8 6 11 11 N 1.34776 * 120.00105 * 179.97438 * 9 8 6 12 12 C 1.46963 * 120.59351 * 359.72427 * 11 9 8 13 13 C 1.53822 * 108.39712 * 124.75478 * 12 11 9 14 14 N 1.46960 * 108.57660 * 49.63811 * 13 12 11 15 15 C 1.36939 * 120.59554 * 124.62772 * 14 13 12 16 16 H 1.07998 * 120.00581 * 208.17540 * 15 14 13 17 17 C 1.38810 * 119.99888 * 28.16863 * 15 14 13 18 18 N 1.31621 * 120.00070 * 17.57407 * 17 15 14 19 19 Si 1.86800 * 120.00351 * 197.57293 * 17 15 14 20 20 H 1.48499 * 109.46968 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47443 * 120.00008 * 19 17 15 22 22 H 1.48500 * 109.47070 * 240.00566 * 19 17 15 23 23 C 1.46965 * 118.81462 * 304.64432 * 14 13 12 24 24 C 1.46962 * 120.59383 * 179.97438 * 11 9 8 25 25 O 1.43742 * 107.29349 * 2.02630 * 6 5 4 26 26 H 1.09003 * 109.46949 * 298.56892 * 1 2 3 27 27 H 1.09002 * 109.47375 * 58.56671 * 1 2 3 28 28 H 1.09004 * 109.47197 * 178.57348 * 1 2 3 29 29 H 1.08997 * 110.90845 * 322.67174 * 4 2 1 30 30 H 1.09001 * 110.90515 * 86.27552 * 4 2 1 31 31 H 1.08997 * 110.48812 * 262.20080 * 5 4 2 32 32 H 1.09001 * 110.60041 * 139.61549 * 5 4 2 33 33 H 1.09001 * 109.47002 * 295.71444 * 8 6 5 34 34 H 1.08997 * 109.47513 * 55.71020 * 8 6 5 35 35 H 1.08997 * 109.61257 * 244.53650 * 12 11 9 36 36 H 1.09003 * 109.61093 * 5.05267 * 12 11 9 37 37 H 1.08999 * 109.74201 * 289.85157 * 13 12 11 38 38 H 1.09002 * 109.52873 * 169.30075 * 13 12 11 39 39 H 0.96997 * 120.00342 * 179.97438 * 18 17 15 40 40 H 1.08994 * 109.61285 * 295.48556 * 23 14 13 41 41 H 1.09003 * 109.61420 * 174.97154 * 23 14 13 42 42 H 1.08996 * 109.61164 * 354.95435 * 24 11 9 43 43 H 1.09003 * 109.60970 * 115.28788 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0757 -0.7911 -1.2161 5 6 3.4794 -1.2178 -0.7219 6 6 3.3839 -1.1243 0.8133 7 1 4.0856 -0.3779 1.1858 8 6 3.6935 -2.4863 1.4377 9 6 3.7011 -2.3605 2.9394 10 8 3.4801 -1.2872 3.4591 11 7 3.9525 -3.4409 3.7049 12 6 4.2148 -4.7492 3.0891 13 6 5.5663 -5.2682 3.6090 14 7 5.5769 -5.1603 5.0746 15 6 5.8315 -6.2581 5.8525 16 1 5.4165 -6.3230 6.8474 17 6 6.6228 -7.2878 5.3621 18 7 7.4023 -7.0806 4.3220 19 14 6.5814 -8.9676 6.1782 20 1 5.6304 -8.9406 7.3184 21 1 6.1416 -9.9866 5.1916 22 1 7.9387 -9.3110 6.6731 23 6 5.3090 -3.8531 5.6905 24 6 3.9636 -3.3329 5.1705 25 8 2.0384 -0.7337 1.1348 26 1 -0.3633 0.4915 0.9026 27 1 -0.3634 0.5359 -0.8769 28 1 -0.3634 -1.0274 -0.0256 29 1 1.4548 -1.6626 -1.4235 30 1 2.1507 -0.1506 -2.0948 31 1 4.2405 -0.5348 -1.0991 32 1 3.6997 -2.2402 -1.0289 33 1 2.9315 -3.2054 1.1371 34 1 4.6706 -2.8287 1.0968 35 1 3.4229 -5.4470 3.3611 36 1 4.2550 -4.6419 2.0051 37 1 6.3758 -4.6689 3.1922 38 1 5.6925 -6.3110 3.3180 39 1 7.9555 -7.7999 3.9795 40 1 6.1000 -3.1531 5.4220 41 1 5.2652 -3.9614 6.7743 42 1 3.8377 -2.2900 5.4614 43 1 3.1522 -3.9294 5.5875 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950018717.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:02 Heat of formation + Delta-G solvation = -59.429485 kcal Electronic energy + Delta-G solvation = -23050.197252 eV Core-core repulsion = 19709.952986 eV Total energy + Delta-G solvation = -3340.244265 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.04704 -38.98257 -36.68298 -33.80542 -32.93282 -32.27830 -31.37074 -30.20323 -29.11645 -26.85482 -24.77245 -23.47651 -22.70517 -21.46563 -21.12630 -20.28919 -18.52093 -17.25074 -16.51350 -16.16028 -15.74802 -15.52725 -14.92691 -14.59509 -14.49132 -13.99201 -13.67091 -13.43912 -13.32370 -13.18484 -12.96519 -12.65120 -12.37356 -12.12649 -11.81590 -11.64498 -11.56802 -11.33724 -11.13694 -11.00067 -10.86081 -10.74076 -10.71677 -10.46072 -10.22465 -10.01304 -9.82661 -9.58394 -9.21845 -8.59900 -8.15969 -6.70999 -5.86568 -3.30370 3.12940 3.32857 3.41274 3.43432 3.52468 3.76417 4.41834 4.44032 4.53556 4.77520 4.83049 4.97668 5.11732 5.23486 5.26577 5.32653 5.38596 5.39177 5.44622 5.58768 5.62932 5.70152 5.80900 5.85221 5.91167 5.94256 5.99909 6.00469 6.08705 6.15492 6.26725 6.37483 6.47728 6.80884 6.97051 7.02432 7.23657 7.45526 7.72255 8.01435 8.35218 8.70125 9.11567 9.74219 10.31463 11.21161 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034905 B = 0.003593 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.993656 B = 7791.319966 C = 8145.887741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.067 3.933 3 H 0.067 0.933 4 C -0.150 4.150 5 C -0.154 4.154 6 C 0.096 3.904 7 H 0.074 0.926 8 C -0.139 4.139 9 C 0.511 3.489 10 O -0.548 6.548 11 N -0.601 5.601 12 C 0.080 3.920 13 C 0.158 3.842 14 N -0.592 5.592 15 C -0.253 4.253 16 H 0.068 0.932 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.904 3.096 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.290 1.290 23 C 0.132 3.868 24 C 0.097 3.903 25 O -0.354 6.354 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.023 0.977 38 H 0.099 0.901 39 H 0.254 0.746 40 H 0.023 0.977 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.641 9.948 -11.894 18.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.009 3.991 3 H 0.084 0.916 4 C -0.188 4.188 5 C -0.192 4.192 6 C 0.037 3.963 7 H 0.092 0.908 8 C -0.179 4.179 9 C 0.299 3.701 10 O -0.427 6.427 11 N -0.334 5.334 12 C -0.044 4.044 13 C 0.031 3.969 14 N -0.315 5.315 15 C -0.383 4.383 16 H 0.086 0.914 17 C -0.196 4.196 18 N -0.547 5.547 19 Si 0.733 3.267 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.217 1.217 23 C 0.005 3.995 24 C -0.027 4.027 25 O -0.273 6.273 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.041 0.959 38 H 0.117 0.883 39 H 0.064 0.936 40 H 0.041 0.959 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.743 10.328 -11.464 18.248 hybrid contribution 0.290 -1.039 0.115 1.085 sum -9.453 9.288 -11.348 17.448 Atomic orbital electron populations 1.21752 0.93437 1.02785 1.02246 1.23111 0.95105 0.95474 0.85402 0.91553 1.23176 0.96355 1.00772 0.98472 1.23034 0.97764 1.03053 0.95338 1.22422 0.85713 0.95345 0.92782 0.90772 1.21917 1.04084 0.98367 0.93516 1.20418 0.76686 0.83839 0.89135 1.90651 1.49928 1.27211 1.74879 1.48069 1.68984 1.09225 1.07110 1.22751 1.01584 0.83508 0.96583 1.21262 0.89928 1.01854 0.83860 1.43999 1.82139 1.03947 1.01396 1.19259 1.24571 0.95399 0.99051 0.91434 1.25062 0.95972 0.99852 0.98749 1.70027 1.26208 1.31567 1.26910 0.86203 0.77405 0.84226 0.78827 1.20196 1.21488 1.21694 1.21293 0.92883 0.88329 0.96979 1.22143 0.99804 1.01449 0.79347 1.89047 1.27184 1.73204 1.37892 0.91820 0.91435 0.91904 0.90473 0.90494 0.90516 0.90103 0.88565 0.87786 0.91914 0.91134 0.95869 0.88258 0.93573 0.95912 0.91609 0.90093 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.66 37.15 0.36 -0.97 16 2 C 0.07 0.72 3.98 -25.68 -0.10 0.62 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 4 C -0.15 -1.30 6.59 -24.72 -0.16 -1.46 16 5 C -0.15 -1.45 6.64 -25.20 -0.17 -1.61 16 6 C 0.10 1.26 2.94 -26.16 -0.08 1.18 16 7 H 0.07 1.06 7.95 -51.93 -0.41 0.65 16 8 C -0.14 -1.91 3.53 -27.89 -0.10 -2.01 16 9 C 0.51 9.34 7.59 -10.99 -0.08 9.25 16 10 O -0.55 -11.67 14.90 -6.71 -0.10 -11.77 16 11 N -0.60 -11.30 2.94 -172.24 -0.51 -11.81 16 12 C 0.08 1.45 6.54 -3.36 -0.02 1.43 16 13 C 0.16 3.57 5.53 -3.36 -0.02 3.55 16 14 N -0.59 -14.57 2.97 -171.79 -0.51 -15.08 16 15 C -0.25 -6.78 9.58 -15.06 -0.14 -6.92 16 16 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 17 C 0.00 0.06 4.90 -17.43 -0.09 -0.03 16 18 N -0.90 -25.30 11.20 55.49 0.62 -24.67 16 19 Si 0.90 21.09 29.59 -169.99 -5.03 16.06 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 C 0.13 2.84 6.67 -3.62 -0.02 2.81 16 24 C 0.10 1.87 6.59 -3.62 -0.02 1.84 16 25 O -0.35 -5.30 10.24 -47.50 -0.49 -5.79 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 29 H 0.08 0.64 8.05 -51.93 -0.42 0.23 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.68 7.70 -51.93 -0.40 0.28 16 33 H 0.10 1.21 7.90 -51.93 -0.41 0.80 16 34 H 0.10 1.25 7.73 -51.93 -0.40 0.85 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.07 1.04 5.91 -51.93 -0.31 0.73 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.10 2.47 5.99 -51.93 -0.31 2.16 16 39 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 1.35 7.93 -51.93 -0.41 0.93 16 42 H 0.08 1.55 6.99 -51.93 -0.36 1.19 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 337.66 15.07 5.09 5.09 Total: -1.00 -31.91 337.66 -8.78 -40.69 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -7.21 Total: -0.40 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -0.65 Total: 7.69 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.39 Total: -51.56 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.59 Total: -17.56 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.91 -8.78 -40.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950018717.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.738 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds