Wall clock time and date at job start Tue Mar 31 2020 07:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.99910 * 2 1 4 4 C 1.54340 * 109.98845 * 238.96199 * 2 1 3 5 5 H 1.08994 * 110.84659 * 100.20084 * 4 2 1 6 6 N 1.46493 * 110.51808 * 336.97682 * 4 2 1 7 7 C 1.36935 * 120.00328 * 157.02571 * 6 4 2 8 8 H 1.08004 * 119.99655 * 0.02562 * 7 6 4 9 9 C 1.38811 * 120.00459 * 179.97438 * 7 6 4 10 10 N 1.31626 * 119.99641 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00003 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47443 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47229 * 120.00623 * 11 9 7 14 14 H 1.48500 * 109.47084 * 240.00001 * 11 9 7 15 15 C 1.55158 * 103.01836 * 218.66554 * 4 2 1 16 16 C 1.54908 * 101.57980 * 35.30682 * 15 4 2 17 17 N 1.47017 * 109.88066 * 121.09659 * 2 1 3 18 18 C 1.34779 * 125.65084 * 298.38905 * 17 2 1 19 19 O 1.21368 * 119.99762 * 359.72169 * 18 17 2 20 20 C 1.49082 * 120.00312 * 179.44284 * 18 17 2 21 21 O 1.20786 * 120.00084 * 0.28037 * 20 18 17 22 22 C 1.50699 * 120.00397 * 180.27805 * 20 18 17 23 23 C 1.52990 * 109.47500 * 180.02562 * 22 20 18 24 24 C 1.53004 * 109.46876 * 300.00244 * 22 20 18 25 25 C 1.53001 * 109.46816 * 59.99923 * 22 20 18 26 26 H 1.09006 * 109.46972 * 306.15612 * 1 2 3 27 27 H 1.09000 * 109.47094 * 66.15455 * 1 2 3 28 28 H 1.09002 * 109.47673 * 186.15757 * 1 2 3 29 29 H 0.97005 * 120.00242 * 337.03132 * 6 4 2 30 30 H 0.97001 * 119.99297 * 179.97438 * 10 9 7 31 31 H 1.09005 * 111.00243 * 277.23310 * 15 4 2 32 32 H 1.08993 * 111.03767 * 153.39504 * 15 4 2 33 33 H 1.09008 * 110.36833 * 204.14787 * 16 15 4 34 34 H 1.09000 * 110.45864 * 81.87945 * 16 15 4 35 35 H 1.09004 * 109.47478 * 60.00157 * 23 22 20 36 36 H 1.08997 * 109.47595 * 179.97438 * 23 22 20 37 37 H 1.09003 * 109.47839 * 300.00093 * 23 22 20 38 38 H 1.09001 * 109.47048 * 60.00078 * 24 22 20 39 39 H 1.09001 * 109.46740 * 179.97438 * 24 22 20 40 40 H 1.09000 * 109.47348 * 299.99812 * 24 22 20 41 41 H 1.08999 * 109.47126 * 60.00334 * 25 22 20 42 42 H 1.09001 * 109.46879 * 180.02562 * 25 22 20 43 43 H 1.09001 * 109.47175 * 299.99982 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0575 -0.7479 -1.2428 5 1 2.3597 -0.0450 -2.0191 6 7 1.0464 -1.6790 -1.7494 7 6 1.0842 -2.0862 -3.0562 8 1 1.8597 -1.7213 -3.7133 9 6 0.1264 -2.9690 -3.5361 10 7 -0.8185 -3.4141 -2.7351 11 14 0.1785 -3.5250 -5.3186 12 1 1.3305 -2.8855 -6.0033 13 1 0.3286 -5.0014 -5.3724 14 1 -1.0822 -3.1307 -5.9972 15 6 3.2863 -1.5184 -0.6915 16 6 2.8098 -1.8825 0.7368 17 7 2.0299 -0.7141 1.1839 18 6 1.8074 -0.3620 2.4657 19 8 1.1470 0.6245 2.7181 20 6 2.3671 -1.1879 3.5735 21 8 3.0243 -2.1697 3.3223 22 6 2.1130 -0.7978 5.0068 23 6 2.7932 -1.8037 5.9374 24 6 2.6816 0.5993 5.2636 25 6 0.6066 -0.7925 5.2744 26 1 -0.3633 0.6063 0.8298 27 1 -0.3633 0.4155 -0.9399 28 1 -0.3634 -1.0217 0.1102 29 1 0.3500 -2.0070 -1.1591 30 1 -1.4879 -4.0306 -3.0706 31 1 4.1669 -0.8769 -0.6580 32 1 3.4812 -2.4156 -1.2789 33 1 3.6655 -2.0413 1.3933 34 1 2.1805 -2.7722 0.7133 35 1 3.8665 -1.8071 5.7467 36 1 2.6099 -1.5213 6.9741 37 1 2.3886 -2.7992 5.7547 38 1 2.1972 1.3161 4.6005 39 1 2.4974 0.8816 6.3001 40 1 3.7547 0.5955 5.0728 41 1 0.2015 -1.7877 5.0915 42 1 0.4227 -0.5099 6.3110 43 1 0.1223 -0.0755 4.6114 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986067932.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:37 Heat of formation + Delta-G solvation = -53.912015 kcal Electronic energy + Delta-G solvation = -23524.393853 eV Core-core repulsion = 20184.388843 eV Total energy + Delta-G solvation = -3340.005010 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.92590 -39.04586 -37.52612 -35.87590 -33.93283 -31.58936 -30.85200 -29.01267 -27.54235 -27.44034 -25.79371 -25.19009 -23.60023 -22.52993 -20.76530 -19.14182 -18.35404 -17.48817 -16.82746 -16.42678 -15.92191 -15.36950 -15.01159 -14.52222 -14.07822 -13.90817 -13.80264 -13.30953 -13.16304 -13.13540 -12.65245 -12.45251 -12.33331 -12.30776 -12.27909 -11.85811 -11.70063 -11.40404 -11.25172 -11.12310 -11.06623 -11.00745 -10.83229 -10.67403 -10.61819 -10.23148 -10.02458 -9.64975 -9.06444 -8.96701 -8.42713 -7.05075 -5.83913 -3.13679 1.07320 2.78578 3.13709 3.39470 3.45526 3.47663 4.05662 4.45894 4.52944 4.70764 4.71218 5.08550 5.14150 5.21622 5.40392 5.45095 5.47625 5.58414 5.61452 5.61844 5.67000 5.73796 5.73932 5.79517 5.82857 5.93853 5.99919 6.07524 6.13531 6.19076 6.32706 6.38669 6.49850 6.57213 6.63643 6.79368 6.93377 7.03088 7.64635 7.65421 8.11618 8.34139 9.46027 10.00612 10.35744 11.38405 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030878 B = 0.004101 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.566648 B = 6825.232233 C = 6889.265066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.121 3.879 3 H 0.075 0.925 4 C 0.172 3.828 5 H 0.071 0.929 6 N -0.714 5.714 7 C -0.244 4.244 8 H 0.073 0.927 9 C -0.009 4.009 10 N -0.930 5.930 11 Si 0.907 3.093 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.291 1.291 15 C -0.162 4.162 16 C 0.101 3.899 17 N -0.579 5.579 18 C 0.485 3.515 19 O -0.518 6.518 20 C 0.360 3.640 21 O -0.415 6.415 22 C -0.094 4.094 23 C -0.135 4.135 24 C -0.142 4.142 25 C -0.143 4.143 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.388 0.612 30 H 0.256 0.744 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.193 6.313 15.225 17.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.018 3.982 3 H 0.093 0.907 4 C 0.059 3.941 5 H 0.089 0.911 6 N -0.356 5.356 7 C -0.375 4.375 8 H 0.091 0.909 9 C -0.206 4.206 10 N -0.578 5.578 11 Si 0.738 3.262 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C -0.203 4.203 16 C -0.021 4.021 17 N -0.313 5.313 18 C 0.270 3.730 19 O -0.396 6.396 20 C 0.229 3.771 21 O -0.284 6.284 22 C -0.095 4.095 23 C -0.193 4.193 24 C -0.199 4.199 25 C -0.201 4.201 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.224 0.776 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.202 6.263 15.091 17.856 hybrid contribution -0.231 -0.644 -0.832 1.077 sum 6.971 5.620 14.260 16.838 Atomic orbital electron populations 1.21907 0.93820 1.02702 1.02158 1.22163 0.95702 0.95806 0.84486 0.90657 1.21225 0.89210 0.91738 0.91879 0.91073 1.42556 1.30891 1.51973 1.10199 1.19284 1.09770 1.21446 0.87008 0.90929 1.24747 0.97728 1.00083 0.98021 1.69677 1.17115 1.36402 1.34598 0.86119 0.77245 0.78166 0.84626 1.20506 1.21882 1.21859 1.23573 0.99134 1.02480 0.95113 1.22604 0.95417 0.87902 0.96216 1.48801 1.49806 1.28031 1.04674 1.20469 0.82771 0.86618 0.83162 1.90671 1.39072 1.26823 1.83008 1.24956 0.76686 0.83367 0.92063 1.90383 1.28388 1.23327 1.86285 1.20935 0.98889 0.98333 0.91372 1.21776 1.00726 0.98383 0.98370 1.21894 1.00642 0.94304 1.03102 1.21901 0.92069 1.03068 1.03031 0.92685 0.90900 0.91802 0.77554 0.93454 0.92061 0.89233 0.89936 0.90762 0.92079 0.91617 0.91951 0.90052 0.91379 0.92702 0.92505 0.91376 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.21 37.16 0.31 -2.43 16 2 C 0.12 2.11 3.42 -66.95 -0.23 1.89 16 3 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 4 C 0.17 3.24 3.48 -66.09 -0.23 3.01 16 5 H 0.07 1.32 8.11 -51.93 -0.42 0.90 16 6 N -0.71 -16.84 4.59 -51.65 -0.24 -17.08 16 7 C -0.24 -6.43 9.97 -15.06 -0.15 -6.58 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -27.29 13.06 55.49 0.72 -26.57 16 11 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 C -0.16 -2.71 6.77 -24.58 -0.17 -2.88 16 16 C 0.10 1.68 6.03 -2.53 -0.02 1.66 16 17 N -0.58 -9.74 3.06 -163.66 -0.50 -10.24 16 18 C 0.48 7.81 7.37 -11.76 -0.09 7.72 16 19 O -0.52 -8.80 12.53 5.48 0.07 -8.73 16 20 C 0.36 5.08 6.00 -29.81 -0.18 4.90 16 21 O -0.41 -6.37 13.40 5.98 0.08 -6.29 16 22 C -0.09 -1.04 0.76 -155.66 -0.12 -1.16 16 23 C -0.14 -1.30 7.76 37.15 0.29 -1.01 16 24 C -0.14 -1.40 8.29 37.16 0.31 -1.10 16 25 C -0.14 -1.52 8.29 37.16 0.31 -1.21 16 26 H 0.05 0.98 7.08 -51.93 -0.37 0.61 16 27 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.06 1.32 6.52 -51.93 -0.34 0.98 16 29 H 0.39 9.88 5.69 -40.82 -0.23 9.65 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 33 H 0.08 1.29 6.17 -51.92 -0.32 0.96 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 38 H 0.08 0.93 6.43 -51.93 -0.33 0.60 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 1.01 6.43 -51.93 -0.33 0.67 16 LS Contribution 339.55 15.07 5.12 5.12 Total: -1.00 -29.07 339.55 -6.80 -35.87 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -6.96 Total: 8.71 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -0.06 Total: 2.47 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.01 Total: -53.89 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.15 Total: -15.02 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.07 -6.80 -35.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986067932.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.045 kcal (2) G-P(sol) polarization free energy of solvation -29.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds