Wall clock time and date at job start Tue Mar 31 2020 07:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.86640 * 2 1 4 4 C 1.54322 * 109.88272 * 238.98650 * 2 1 3 5 5 H 1.09002 * 110.71963 * 336.74903 * 4 2 1 6 6 N 1.46502 * 110.72235 * 99.84636 * 4 2 1 7 7 C 1.36933 * 120.00130 * 202.56097 * 6 4 2 8 8 H 1.08000 * 120.00359 * 359.97438 * 7 6 4 9 9 C 1.38813 * 120.00072 * 180.02562 * 7 6 4 10 10 N 1.31621 * 120.00036 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00142 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47086 * 59.99352 * 11 9 7 13 13 H 1.48500 * 109.47233 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46454 * 299.99404 * 11 9 7 15 15 C 1.55157 * 102.94206 * 218.38384 * 4 2 1 16 16 C 1.54909 * 101.57958 * 35.50243 * 15 4 2 17 17 N 1.47018 * 109.88496 * 121.17386 * 2 1 3 18 18 C 1.34778 * 125.65052 * 298.40104 * 17 2 1 19 19 O 1.21364 * 119.99559 * 359.97438 * 18 17 2 20 20 C 1.49087 * 119.99922 * 179.97438 * 18 17 2 21 21 O 1.20777 * 120.00274 * 359.97438 * 20 18 17 22 22 C 1.50706 * 119.99717 * 179.97438 * 20 18 17 23 23 C 1.52996 * 109.46849 * 179.97438 * 22 20 18 24 24 C 1.52998 * 109.47144 * 300.00107 * 22 20 18 25 25 C 1.52996 * 109.47040 * 59.99738 * 22 20 18 26 26 H 1.09000 * 109.46655 * 181.01491 * 1 2 3 27 27 H 1.08997 * 109.46984 * 301.01326 * 1 2 3 28 28 H 1.08998 * 109.47475 * 61.01940 * 1 2 3 29 29 H 0.97000 * 119.99643 * 22.55598 * 6 4 2 30 30 H 0.97002 * 120.00200 * 180.02562 * 10 9 7 31 31 H 1.09000 * 111.00495 * 153.57626 * 15 4 2 32 32 H 1.08997 * 111.00429 * 277.43204 * 15 4 2 33 33 H 1.08998 * 110.36917 * 204.14700 * 16 15 4 34 34 H 1.09009 * 110.46209 * 81.87337 * 16 15 4 35 35 H 1.08997 * 109.47303 * 60.00288 * 23 22 20 36 36 H 1.08998 * 109.47111 * 179.97438 * 23 22 20 37 37 H 1.08993 * 109.47281 * 300.00181 * 23 22 20 38 38 H 1.09001 * 109.47477 * 60.00025 * 24 22 20 39 39 H 1.08998 * 109.47023 * 180.02562 * 24 22 20 40 40 H 1.09005 * 109.46853 * 300.00033 * 24 22 20 41 41 H 1.09007 * 109.46776 * 60.00261 * 25 22 20 42 42 H 1.08998 * 109.46899 * 179.97438 * 25 22 20 43 43 H 1.09002 * 109.47625 * 300.00246 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0549 -0.7477 -1.2438 5 1 1.3051 -1.4437 -1.6203 6 7 2.4515 0.1992 -2.2889 7 6 2.5014 -0.2052 -3.5962 8 1 2.2487 -1.2223 -3.8568 9 6 2.8777 0.6919 -4.5863 10 7 3.1862 1.9314 -4.2687 11 14 2.9451 0.1405 -6.3698 12 1 1.5996 -0.3211 -6.7964 13 1 3.3715 1.2780 -7.2240 14 1 3.9172 -0.9737 -6.5069 15 6 3.2877 -1.5131 -0.6946 16 6 2.8147 -1.8803 0.7341 17 7 2.0301 -0.7156 1.1829 18 6 1.8074 -0.3655 2.4652 19 8 1.1430 0.6179 2.7190 20 6 2.3772 -1.1862 3.5717 21 8 3.0380 -2.1651 3.3191 22 6 2.1287 -0.7943 5.0056 23 6 2.8180 -1.7955 5.9347 24 6 2.6915 0.6062 5.2564 25 6 0.6238 -0.7959 5.2812 26 1 -0.3633 -1.0275 0.0182 27 1 -0.3633 0.5295 0.8807 28 1 -0.3634 0.4979 -0.8989 29 1 2.6788 1.1127 -2.0547 30 1 3.4488 2.5585 -4.9607 31 1 3.4854 -2.4091 -1.2830 32 1 4.1654 -0.8677 -0.6616 33 1 3.6717 -2.0357 1.3893 34 1 2.1892 -2.7728 0.7108 35 1 3.8902 -1.7947 5.7384 36 1 2.6387 -1.5118 6.9717 37 1 2.4167 -2.7929 5.7559 38 1 2.2001 1.3192 4.5944 39 1 2.5121 0.8894 6.2935 40 1 3.7637 0.6073 5.0600 41 1 0.2228 -1.7937 5.1025 42 1 0.4441 -0.5129 6.3183 43 1 0.1323 -0.0829 4.6192 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986067941.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:49 Heat of formation + Delta-G solvation = -58.819902 kcal Electronic energy + Delta-G solvation = -23206.248064 eV Core-core repulsion = 19866.030232 eV Total energy + Delta-G solvation = -3340.217832 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.00491 -39.06098 -37.55138 -35.92745 -34.09540 -31.63977 -30.96091 -29.26816 -27.61435 -27.49842 -25.85292 -25.22150 -23.19022 -22.57650 -20.81323 -19.73831 -18.44286 -17.34620 -16.93401 -16.44632 -15.99773 -15.44552 -14.94844 -14.65698 -14.25192 -13.88637 -13.72404 -13.40468 -13.22961 -13.18287 -12.81234 -12.53442 -12.41984 -12.38737 -12.16995 -11.92524 -11.78885 -11.59771 -11.47960 -11.25828 -11.18444 -11.05749 -10.88001 -10.75277 -10.60294 -10.28749 -10.04611 -9.76029 -9.17428 -8.93317 -8.52945 -7.06233 -5.83862 -3.14602 0.98030 2.68376 3.04497 3.40408 3.45111 3.46059 3.95400 4.38235 4.52668 4.64127 4.64672 5.02957 5.07461 5.16230 5.34369 5.35852 5.41842 5.48819 5.56133 5.59357 5.60847 5.66519 5.67731 5.73400 5.77306 5.86706 5.89329 6.01728 6.07947 6.11509 6.12508 6.27845 6.39328 6.51609 6.54168 6.59644 6.88491 6.92681 7.55423 7.63268 8.02846 8.33228 9.44812 9.98401 10.33400 11.38193 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036705 B = 0.003704 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.657439 B = 7557.720266 C = 7783.347573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.121 3.879 3 H 0.082 0.918 4 C 0.176 3.824 5 H 0.067 0.933 6 N -0.714 5.714 7 C -0.246 4.246 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.158 4.158 16 C 0.094 3.906 17 N -0.580 5.580 18 C 0.484 3.516 19 O -0.514 6.514 20 C 0.361 3.639 21 O -0.416 6.416 22 C -0.094 4.094 23 C -0.135 4.135 24 C -0.144 4.144 25 C -0.143 4.143 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.386 0.614 30 H 0.257 0.743 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.068 0.932 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.660 -6.787 19.072 20.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.018 3.982 3 H 0.100 0.900 4 C 0.065 3.935 5 H 0.085 0.915 6 N -0.354 5.354 7 C -0.376 4.376 8 H 0.090 0.910 9 C -0.205 4.205 10 N -0.578 5.578 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.199 4.199 16 C -0.029 4.029 17 N -0.315 5.315 18 C 0.269 3.731 19 O -0.391 6.391 20 C 0.231 3.769 21 O -0.286 6.286 22 C -0.096 4.096 23 C -0.192 4.192 24 C -0.201 4.201 25 C -0.200 4.200 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.220 0.780 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.669 -6.838 18.935 20.308 hybrid contribution 0.244 -0.014 -0.988 1.018 sum -2.425 -6.852 17.947 19.363 Atomic orbital electron populations 1.22044 0.94498 1.01736 1.02938 1.22094 0.94730 0.97093 0.84279 0.89970 1.21246 0.93682 0.91609 0.87009 0.91474 1.42325 1.80421 1.10286 1.02368 1.19163 1.39264 0.95983 0.83239 0.91004 1.24765 1.01900 0.95726 0.98151 1.69654 1.51795 1.03705 1.32599 0.86248 0.77801 0.77276 0.84709 1.21164 1.21661 1.21173 1.23622 1.01310 1.01839 0.93147 1.22690 0.95525 0.87510 0.97173 1.48694 1.49800 1.28252 1.04727 1.20493 0.82876 0.86579 0.83105 1.90685 1.38887 1.26655 1.82897 1.24969 0.76669 0.83189 0.92078 1.90369 1.28412 1.23516 1.86259 1.20943 0.98855 0.98468 0.91288 1.21775 1.00768 0.98259 0.98434 1.21907 1.00876 0.94128 1.03186 1.21899 0.92137 1.02838 1.03122 0.93023 0.91900 0.90811 0.77981 0.93290 0.90360 0.90636 0.89540 0.91418 0.92004 0.91570 0.92038 0.89980 0.91307 0.92573 0.92654 0.91312 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.09 37.16 0.34 -2.16 16 2 C 0.12 2.13 3.21 -66.95 -0.21 1.91 16 3 H 0.08 1.60 7.70 -51.93 -0.40 1.20 16 4 C 0.18 3.38 3.12 -66.10 -0.21 3.17 16 5 H 0.07 1.28 7.81 -51.93 -0.41 0.88 16 6 N -0.71 -17.20 5.24 -51.65 -0.27 -17.47 16 7 C -0.25 -6.55 9.97 -15.06 -0.15 -6.70 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 10 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16 11 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 C -0.16 -2.68 6.77 -24.58 -0.17 -2.85 16 16 C 0.09 1.39 6.06 -2.53 -0.02 1.37 16 17 N -0.58 -9.27 3.07 -163.66 -0.50 -9.77 16 18 C 0.48 7.43 7.37 -11.76 -0.09 7.34 16 19 O -0.51 -8.52 12.43 5.48 0.07 -8.45 16 20 C 0.36 4.73 6.00 -29.80 -0.18 4.55 16 21 O -0.42 -5.83 13.39 5.98 0.08 -5.75 16 22 C -0.09 -0.97 0.76 -155.66 -0.12 -1.09 16 23 C -0.14 -1.18 7.76 37.16 0.29 -0.89 16 24 C -0.14 -1.40 8.29 37.16 0.31 -1.10 16 25 C -0.14 -1.34 8.29 37.16 0.31 -1.03 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 1.02 6.90 -51.93 -0.36 0.66 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.39 10.01 7.53 -40.82 -0.31 9.70 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.09 1.25 6.16 -51.93 -0.32 0.93 16 34 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 35 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 38 H 0.08 0.95 6.43 -51.93 -0.33 0.62 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.91 6.43 -51.93 -0.33 0.57 16 LS Contribution 342.99 15.07 5.17 5.17 Total: -1.00 -29.33 342.99 -6.82 -36.15 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.07 Total: 7.86 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: 0.01 Total: 2.19 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.05 Total: -53.98 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.15 Total: -14.20 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.33 -6.82 -36.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986067941.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.674 kcal (2) G-P(sol) polarization free energy of solvation -29.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds