Wall clock time and date at job start Tue Mar 31 2020 07:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.87316 * 2 1 4 4 C 1.54320 * 110.00869 * 238.90314 * 2 1 3 5 5 H 1.08996 * 110.72212 * 336.67826 * 4 2 1 6 6 N 1.46500 * 110.72033 * 99.95578 * 4 2 1 7 7 C 1.36935 * 119.99846 * 204.99588 * 6 4 2 8 8 H 1.07999 * 120.00469 * 359.97438 * 7 6 4 9 9 C 1.38813 * 119.99852 * 180.02562 * 7 6 4 10 10 N 1.31625 * 119.99922 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00041 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47138 * 89.99843 * 11 9 7 13 13 H 1.48502 * 109.47027 * 209.99823 * 11 9 7 14 14 H 1.48501 * 109.47159 * 329.99849 * 11 9 7 15 15 C 1.55164 * 102.94013 * 218.31787 * 4 2 1 16 16 C 1.54686 * 101.67477 * 35.33603 * 15 4 2 17 17 N 1.47025 * 109.88200 * 121.01537 * 2 1 3 18 18 C 1.34777 * 125.65000 * 298.47967 * 17 2 1 19 19 O 1.21283 * 119.99750 * 359.97438 * 18 17 2 20 20 C 1.50702 * 119.99928 * 180.27553 * 18 17 2 21 21 C 1.52996 * 109.47159 * 179.72352 * 20 18 17 22 22 O 1.42901 * 112.84998 * 53.79617 * 21 20 18 23 23 C 1.53779 * 113.61346 * 282.49637 * 21 20 18 24 24 C 1.53775 * 87.08103 * 220.01693 * 23 21 20 25 25 C 1.53775 * 113.61535 * 184.99917 * 21 20 18 26 26 H 1.09007 * 109.47346 * 300.43803 * 1 2 3 27 27 H 1.09004 * 109.47011 * 60.43691 * 1 2 3 28 28 H 1.09000 * 109.47158 * 180.43753 * 1 2 3 29 29 H 0.97003 * 120.00113 * 24.99822 * 6 4 2 30 30 H 0.96999 * 119.99818 * 180.02562 * 10 9 7 31 31 H 1.08998 * 111.00512 * 153.57731 * 15 4 2 32 32 H 1.09003 * 111.00156 * 277.42667 * 15 4 2 33 33 H 1.09005 * 110.39048 * 204.36578 * 16 15 4 34 34 H 1.09004 * 110.23918 * 82.11484 * 16 15 4 35 35 H 1.09004 * 109.46965 * 299.72211 * 20 18 17 36 36 H 1.08994 * 109.46990 * 59.72065 * 20 18 17 37 37 H 0.96699 * 114.00412 * 309.67199 * 22 21 20 38 38 H 1.09004 * 113.61377 * 334.56649 * 23 21 20 39 39 H 1.09007 * 113.61701 * 105.46890 * 23 21 20 40 40 H 1.08992 * 113.61591 * 270.87908 * 24 23 21 41 41 H 1.09003 * 113.61308 * 139.98300 * 24 23 21 42 42 H 1.09001 * 113.61443 * 254.52867 * 25 21 20 43 43 H 1.08996 * 113.61348 * 25.34761 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0580 -0.7489 -1.2417 5 1 1.3103 -1.4471 -1.6178 6 7 2.4579 0.1970 -2.2864 7 6 2.4633 -0.1941 -3.5986 8 1 2.1731 -1.2001 -3.8635 9 6 2.8428 0.7020 -4.5885 10 7 3.1979 1.9276 -4.2656 11 14 2.8494 0.1686 -6.3787 12 1 1.5217 0.4467 -6.9830 13 1 3.8961 0.9214 -7.1156 14 1 3.1356 -1.2862 -6.4607 15 6 3.2917 -1.5108 -0.6893 16 6 2.8221 -1.8731 0.7393 17 7 2.0300 -0.7124 1.1849 18 6 1.8060 -0.3595 2.4663 19 8 1.1408 0.6231 2.7172 20 6 2.3877 -1.1821 3.5870 21 6 1.9921 -0.5659 4.9304 22 8 0.5813 -0.3801 5.0617 23 6 2.8164 0.6773 5.3045 24 6 2.8263 0.1403 6.7454 25 6 2.6373 -1.2610 6.1408 26 1 -0.3634 0.5206 0.8861 27 1 -0.3633 0.5070 -0.8939 28 1 -0.3633 -1.0276 0.0078 29 1 2.7190 1.1005 -2.0485 30 1 3.4627 2.5540 -4.9573 31 1 3.4920 -2.4074 -1.2759 32 1 4.1681 -0.8634 -0.6565 33 1 3.6802 -2.0211 1.3950 34 1 2.2021 -2.7694 0.7164 35 1 2.0039 -2.2005 3.5274 36 1 3.4741 -1.1976 3.5003 37 1 0.1735 0.0775 4.3138 38 1 3.8028 0.7028 4.8412 39 1 2.2701 1.6138 5.1912 40 1 1.9785 0.4763 7.3424 41 1 3.7816 0.2714 7.2536 42 1 1.9464 -1.8894 6.7029 43 1 3.5738 -1.7666 5.9060 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986262886.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:16 Heat of formation + Delta-G solvation = -53.341281 kcal Electronic energy + Delta-G solvation = -23007.728691 eV Core-core repulsion = 19667.748430 eV Total energy + Delta-G solvation = -3339.980261 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.59105 -39.20444 -37.30872 -34.51886 -34.15613 -32.02073 -31.03767 -30.26314 -28.76821 -25.86709 -25.27140 -23.96071 -23.03512 -22.20513 -20.20960 -19.71399 -18.87684 -17.35306 -17.01013 -16.40220 -16.12565 -15.48543 -15.29643 -14.72043 -14.67793 -14.22307 -13.64453 -13.46808 -13.31070 -13.09948 -12.78520 -12.67540 -12.36065 -12.12430 -11.93751 -11.68238 -11.63321 -11.32602 -11.22247 -11.09022 -10.98037 -10.87272 -10.65821 -10.50973 -10.29452 -10.08853 -9.82258 -9.72199 -9.54486 -8.99577 -8.49772 -7.08715 -5.86179 -3.16987 2.64787 3.04987 3.38051 3.43384 3.45092 4.00422 4.32345 4.43845 4.50672 4.56276 4.68879 4.86624 4.96064 5.15094 5.21667 5.25203 5.36109 5.42922 5.47262 5.50998 5.55962 5.59106 5.62548 5.73776 5.75390 5.88233 5.97923 6.03149 6.07512 6.11771 6.22465 6.23762 6.39726 6.52220 6.55970 6.66020 6.85168 7.59146 7.61248 7.81084 8.24517 8.31098 9.42543 9.96443 10.31065 11.35883 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.039017 B = 0.003393 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.466549 B = 8251.255323 C = 8324.961808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.124 3.876 3 H 0.077 0.923 4 C 0.177 3.823 5 H 0.068 0.932 6 N -0.714 5.714 7 C -0.246 4.246 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.929 5.929 11 Si 0.909 3.091 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.157 4.157 16 C 0.097 3.903 17 N -0.605 5.605 18 C 0.530 3.470 19 O -0.549 6.549 20 C -0.159 4.159 21 C 0.130 3.870 22 O -0.551 6.551 23 C -0.161 4.161 24 C -0.135 4.135 25 C -0.128 4.128 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.386 0.614 30 H 0.257 0.743 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.391 0.609 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.111 -8.387 17.835 19.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.020 3.980 3 H 0.095 0.905 4 C 0.065 3.935 5 H 0.086 0.914 6 N -0.354 5.354 7 C -0.377 4.377 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.216 1.216 13 H -0.217 1.217 14 H -0.207 1.207 15 C -0.199 4.199 16 C -0.026 4.026 17 N -0.338 5.338 18 C 0.319 3.681 19 O -0.429 6.429 20 C -0.199 4.199 21 C 0.088 3.912 22 O -0.363 6.363 23 C -0.199 4.199 24 C -0.172 4.172 25 C -0.166 4.166 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.220 0.780 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.246 0.754 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.175 -8.203 18.370 20.119 hybrid contribution 0.206 0.248 -1.601 1.633 sum 0.030 -7.955 16.768 18.560 Atomic orbital electron populations 1.22031 0.94793 1.01564 1.02765 1.21996 0.94533 0.96981 0.84494 0.90476 1.21236 0.93488 0.91608 0.87199 0.91446 1.42345 1.79332 1.11745 1.01941 1.19211 1.38647 0.96906 0.82911 0.90970 1.24775 1.01803 0.95856 0.98155 1.69667 1.51018 1.04600 1.32399 0.86176 0.77316 0.77598 0.84970 1.21606 1.21730 1.20679 1.23551 1.01484 1.01855 0.92968 1.22372 0.94503 0.88399 0.97331 1.48627 1.51357 1.28720 1.05103 1.20233 0.80480 0.84920 0.82463 1.90525 1.41331 1.28052 1.82979 1.22329 1.02978 1.00972 0.93651 1.21774 0.82533 0.95430 0.91502 1.86301 1.18584 1.81473 1.49968 1.23570 1.00565 0.99270 0.96515 1.22740 1.01858 0.96074 0.96566 1.23055 1.00287 0.97296 0.95917 0.91976 0.91115 0.93143 0.77977 0.93326 0.90443 0.90688 0.91300 0.91556 0.88332 0.87990 0.75395 0.89856 0.90538 0.89891 0.91489 0.90590 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.11 37.16 0.34 -2.16 16 2 C 0.12 2.11 3.21 -66.96 -0.21 1.90 16 3 H 0.08 1.51 7.72 -51.93 -0.40 1.11 16 4 C 0.18 3.27 3.15 -66.09 -0.21 3.06 16 5 H 0.07 1.25 7.81 -51.93 -0.41 0.85 16 6 N -0.71 -16.95 5.22 -51.65 -0.27 -17.22 16 7 C -0.25 -6.48 9.96 -15.06 -0.15 -6.63 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 10 N -0.93 -27.31 13.06 55.49 0.72 -26.58 16 11 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 15 C -0.16 -2.44 6.76 -24.70 -0.17 -2.61 16 16 C 0.10 1.18 6.68 -2.65 -0.02 1.17 16 17 N -0.61 -8.74 3.07 -163.16 -0.50 -9.24 16 18 C 0.53 7.50 7.40 -10.98 -0.08 7.42 16 19 O -0.55 -9.17 12.62 -14.26 -0.18 -9.35 16 20 C -0.16 -1.68 4.35 -27.88 -0.12 -1.81 16 21 C 0.13 1.47 1.10 -89.81 -0.10 1.38 16 22 O -0.55 -7.58 13.39 -55.04 -0.74 -8.32 16 23 C -0.16 -1.79 7.16 -25.92 -0.19 -1.97 16 24 C -0.14 -1.27 8.02 -25.92 -0.21 -1.48 16 25 C -0.13 -1.16 7.47 -25.92 -0.19 -1.36 16 26 H 0.06 1.03 6.88 -51.93 -0.36 0.67 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.39 9.94 7.56 -40.82 -0.31 9.63 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.07 0.68 7.47 -51.93 -0.39 0.29 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.10 0.89 7.74 -51.93 -0.40 0.49 16 37 H 0.39 5.56 6.20 45.56 0.28 5.84 16 38 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 39 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 343.17 15.07 5.17 5.17 Total: -1.00 -30.00 343.17 -8.81 -38.81 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -6.59 Total: 13.54 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -1.40 Total: -3.44 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.05 Total: -53.05 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.92 Total: -17.67 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.00 -8.81 -38.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986262886.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.530 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds