Wall clock time and date at job start Tue Mar 31 2020 07:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.87316 * 2 1 4 4 C 1.54320 * 110.00869 * 238.90314 * 2 1 3 5 5 H 1.08996 * 110.72212 * 336.67826 * 4 2 1 6 6 N 1.46500 * 110.72033 * 99.95578 * 4 2 1 7 7 C 1.36935 * 119.99846 * 204.99588 * 6 4 2 8 8 H 1.07999 * 120.00469 * 359.97438 * 7 6 4 9 9 C 1.38813 * 119.99852 * 180.02562 * 7 6 4 10 10 N 1.31625 * 119.99922 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00041 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47138 * 89.99843 * 11 9 7 13 13 H 1.48502 * 109.47027 * 209.99823 * 11 9 7 14 14 H 1.48501 * 109.47159 * 329.99849 * 11 9 7 15 15 C 1.55164 * 102.94013 * 218.31787 * 4 2 1 16 16 C 1.54686 * 101.67477 * 35.33603 * 15 4 2 17 17 N 1.47025 * 109.88200 * 121.01537 * 2 1 3 18 18 C 1.34777 * 125.65000 * 298.47967 * 17 2 1 19 19 O 1.21283 * 119.99750 * 359.97438 * 18 17 2 20 20 C 1.50702 * 119.99928 * 180.27553 * 18 17 2 21 21 C 1.52996 * 109.47159 * 179.72352 * 20 18 17 22 22 O 1.42901 * 112.84998 * 53.79617 * 21 20 18 23 23 C 1.53779 * 113.61346 * 282.49637 * 21 20 18 24 24 C 1.53775 * 87.08103 * 220.01693 * 23 21 20 25 25 C 1.53775 * 113.61535 * 184.99917 * 21 20 18 26 26 H 1.09007 * 109.47346 * 300.43803 * 1 2 3 27 27 H 1.09004 * 109.47011 * 60.43691 * 1 2 3 28 28 H 1.09000 * 109.47158 * 180.43753 * 1 2 3 29 29 H 0.97003 * 120.00113 * 24.99822 * 6 4 2 30 30 H 0.96999 * 119.99818 * 180.02562 * 10 9 7 31 31 H 1.08998 * 111.00512 * 153.57731 * 15 4 2 32 32 H 1.09003 * 111.00156 * 277.42667 * 15 4 2 33 33 H 1.09005 * 110.39048 * 204.36578 * 16 15 4 34 34 H 1.09004 * 110.23918 * 82.11484 * 16 15 4 35 35 H 1.09004 * 109.46965 * 299.72211 * 20 18 17 36 36 H 1.08994 * 109.46990 * 59.72065 * 20 18 17 37 37 H 0.96699 * 114.00412 * 309.67199 * 22 21 20 38 38 H 1.09004 * 113.61377 * 334.56649 * 23 21 20 39 39 H 1.09007 * 113.61701 * 105.46890 * 23 21 20 40 40 H 1.08992 * 113.61591 * 270.87908 * 24 23 21 41 41 H 1.09003 * 113.61308 * 139.98300 * 24 23 21 42 42 H 1.09001 * 113.61443 * 254.52867 * 25 21 20 43 43 H 1.08996 * 113.61348 * 25.34761 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0580 -0.7489 -1.2417 5 1 1.3103 -1.4471 -1.6178 6 7 2.4579 0.1970 -2.2864 7 6 2.4633 -0.1941 -3.5986 8 1 2.1731 -1.2001 -3.8635 9 6 2.8428 0.7020 -4.5885 10 7 3.1979 1.9276 -4.2656 11 14 2.8494 0.1686 -6.3787 12 1 1.5217 0.4467 -6.9830 13 1 3.8961 0.9214 -7.1156 14 1 3.1356 -1.2862 -6.4607 15 6 3.2917 -1.5108 -0.6893 16 6 2.8221 -1.8731 0.7393 17 7 2.0300 -0.7124 1.1849 18 6 1.8060 -0.3595 2.4663 19 8 1.1408 0.6231 2.7172 20 6 2.3877 -1.1821 3.5870 21 6 1.9921 -0.5659 4.9304 22 8 0.5813 -0.3801 5.0617 23 6 2.8164 0.6773 5.3045 24 6 2.8263 0.1403 6.7454 25 6 2.6373 -1.2610 6.1408 26 1 -0.3634 0.5206 0.8861 27 1 -0.3633 0.5070 -0.8939 28 1 -0.3633 -1.0276 0.0078 29 1 2.7190 1.1005 -2.0485 30 1 3.4627 2.5540 -4.9573 31 1 3.4920 -2.4074 -1.2759 32 1 4.1681 -0.8634 -0.6565 33 1 3.6802 -2.0211 1.3950 34 1 2.2021 -2.7694 0.7164 35 1 2.0039 -2.2005 3.5274 36 1 3.4741 -1.1976 3.5003 37 1 0.1735 0.0775 4.3138 38 1 3.8028 0.7028 4.8412 39 1 2.2701 1.6138 5.1912 40 1 1.9785 0.4763 7.3424 41 1 3.7816 0.2714 7.2536 42 1 1.9464 -1.8894 6.7029 43 1 3.5738 -1.7666 5.9060 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986262886.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:15 Heat of formation + Delta-G solvation = -73.116177 kcal Electronic energy + Delta-G solvation = -23008.586195 eV Core-core repulsion = 19667.748430 eV Total energy + Delta-G solvation = -3340.837765 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.64054 -40.24622 -38.53633 -35.95436 -35.39509 -33.55587 -32.42669 -31.52037 -30.10538 -26.86148 -26.63259 -25.13239 -24.54352 -23.30516 -21.62240 -20.54965 -20.10287 -19.14432 -18.16735 -17.42509 -17.26761 -16.64481 -16.53053 -16.00495 -15.76372 -15.46184 -15.29377 -14.85808 -14.61122 -14.29089 -13.86944 -13.75784 -13.49161 -13.29609 -13.17229 -13.08324 -12.91414 -12.65259 -12.55544 -12.48369 -12.19606 -12.11809 -12.06818 -11.75744 -11.72674 -11.55094 -11.38025 -10.92588 -10.65607 -10.59590 -9.67843 -9.03455 -7.94866 -5.24852 1.49158 1.50532 1.57158 1.58711 1.92363 2.57010 3.16247 3.32842 3.42005 3.65075 3.71655 3.74268 3.77868 3.92646 3.98707 4.15985 4.21613 4.35636 4.40981 4.43431 4.51700 4.53932 4.67213 4.69633 4.77612 4.81337 4.86518 4.93241 5.04682 5.06476 5.14699 5.21548 5.24298 5.31977 5.34326 5.44345 5.47280 5.54258 6.25524 6.52338 6.74903 7.15404 7.31968 8.04172 8.27554 9.28612 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.039017 B = 0.003393 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.466549 B = 8251.255323 C = 8324.961808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.131 3.869 3 H 0.042 0.958 4 C 0.169 3.831 5 H 0.071 0.929 6 N -0.729 5.729 7 C -0.237 4.237 8 H 0.083 0.917 9 C -0.076 4.076 10 N -0.971 5.971 11 Si 0.973 3.027 12 H -0.290 1.290 13 H -0.299 1.299 14 H -0.264 1.264 15 C -0.149 4.149 16 C 0.104 3.896 17 N -0.607 5.607 18 C 0.523 3.477 19 O -0.582 6.582 20 C -0.148 4.148 21 C 0.113 3.887 22 O -0.567 6.567 23 C -0.169 4.169 24 C -0.133 4.133 25 C -0.115 4.115 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.370 0.630 30 H 0.250 0.750 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.385 0.615 38 H 0.095 0.905 39 H 0.047 0.953 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.016 -11.577 19.048 22.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.026 3.974 3 H 0.060 0.940 4 C 0.059 3.941 5 H 0.089 0.911 6 N -0.368 5.368 7 C -0.369 4.369 8 H 0.101 0.899 9 C -0.268 4.268 10 N -0.622 5.622 11 Si 0.802 3.198 12 H -0.217 1.217 13 H -0.226 1.226 14 H -0.189 1.189 15 C -0.190 4.190 16 C -0.018 4.018 17 N -0.339 5.339 18 C 0.314 3.686 19 O -0.464 6.464 20 C -0.188 4.188 21 C 0.071 3.929 22 O -0.379 6.379 23 C -0.207 4.207 24 C -0.170 4.170 25 C -0.152 4.152 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.202 0.798 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.112 0.888 35 H 0.140 0.860 36 H 0.148 0.852 37 H 0.239 0.761 38 H 0.113 0.887 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.728 -11.471 19.629 22.747 hybrid contribution -0.116 1.249 -1.886 2.265 sum 0.612 -10.222 17.743 20.486 Atomic orbital electron populations 1.21922 0.94337 1.02311 1.01606 1.21643 0.94800 0.95421 0.85545 0.93956 1.21448 0.95060 0.91048 0.86507 0.91096 1.42520 1.79751 1.12036 1.02482 1.19632 1.36214 0.97004 0.84040 0.89877 1.25576 1.02931 0.96081 1.02184 1.69834 1.53383 1.05847 1.33124 0.85147 0.76671 0.77833 0.80140 1.21726 1.22634 1.18895 1.23356 0.98919 1.01282 0.95462 1.22523 0.95869 0.88027 0.95362 1.48673 1.51650 1.29142 1.04471 1.21013 0.79899 0.84808 0.82849 1.90524 1.42743 1.29707 1.83401 1.22372 1.04384 1.00989 0.91007 1.22131 0.81396 0.96163 0.93169 1.86289 1.20314 1.81407 1.49897 1.23631 1.00755 0.98074 0.98194 1.22725 1.02418 0.96357 0.95526 1.23100 1.01191 0.96839 0.94091 0.92657 0.92720 0.91333 0.79764 0.94117 0.89248 0.92615 0.87746 0.88803 0.85995 0.85186 0.76115 0.88676 0.93403 0.91188 0.89504 0.90644 0.85922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.69 9.11 71.98 0.66 -4.04 16 2 C 0.13 4.48 3.21 45.34 0.15 4.62 16 3 H 0.04 1.74 7.72 -2.39 -0.02 1.72 16 4 C 0.17 6.15 3.15 46.18 0.15 6.29 16 5 H 0.07 2.53 7.81 -2.39 -0.02 2.51 16 6 N -0.73 -35.22 5.22 -317.33 -1.66 -36.88 16 7 C -0.24 -12.53 9.96 84.03 0.84 -11.69 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 9 C -0.08 -4.22 5.50 84.86 0.47 -3.75 16 10 N -0.97 -58.83 13.06 21.65 0.28 -58.54 16 11 Si 0.97 44.86 29.55 68.60 2.03 46.89 16 12 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 13 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 14 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 15 C -0.15 -4.30 6.76 31.91 0.22 -4.09 16 16 C 0.10 2.11 6.68 86.78 0.58 2.69 16 17 N -0.61 -16.30 3.07 -788.50 -2.42 -18.72 16 18 C 0.52 13.89 7.40 87.66 0.65 14.54 16 19 O -0.58 -19.56 12.62 15.90 0.20 -19.36 16 20 C -0.15 -2.58 4.35 29.85 0.13 -2.45 16 21 C 0.11 2.32 1.10 -10.27 -0.01 2.31 16 22 O -0.57 -15.28 13.39 -130.04 -1.74 -17.02 16 23 C -0.17 -3.53 7.16 31.12 0.22 -3.30 16 24 C -0.13 -2.22 8.02 31.12 0.25 -1.97 16 25 C -0.12 -1.68 7.47 31.12 0.23 -1.45 16 26 H 0.05 1.87 6.88 -2.38 -0.02 1.85 16 27 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.37 19.93 7.56 -92.71 -0.70 19.23 16 30 H 0.25 14.78 8.31 -92.71 -0.77 14.00 16 31 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.10 1.47 7.47 -2.38 -0.02 1.45 16 34 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.13 1.58 7.74 -2.39 -0.02 1.56 16 37 H 0.38 11.14 6.20 -74.06 -0.46 10.68 16 38 H 0.09 1.72 8.04 -2.39 -0.02 1.70 16 39 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.09 1.10 8.14 -2.39 -0.02 1.09 16 42 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 43 H 0.12 1.07 8.10 -2.39 -0.02 1.05 16 Total: -1.00 -67.85 343.17 1.06 -66.80 By element: Atomic # 1 Polarization: 39.29 SS G_CDS: -0.16 Total: 39.14 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 4.52 Total: -2.30 kcal Atomic # 7 Polarization: -110.35 SS G_CDS: -3.79 Total: -114.14 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -1.54 Total: -36.38 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -67.85 1.06 -66.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986262886.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.320 kcal (2) G-P(sol) polarization free energy of solvation -67.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds