Wall clock time and date at job start Tue Mar 31 2020 06:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.87909 * 2 1 4 4 C 1.54328 * 109.88129 * 121.17414 * 2 1 3 5 5 C 1.55155 * 102.94171 * 141.60913 * 4 2 1 6 6 H 1.09004 * 111.00681 * 206.42503 * 5 4 2 7 7 N 1.46498 * 111.00662 * 82.57357 * 5 4 2 8 8 C 1.36932 * 120.00476 * 161.35090 * 7 5 4 9 9 H 1.08007 * 119.99869 * 359.97438 * 8 7 5 10 10 C 1.38813 * 120.00393 * 179.97438 * 8 7 5 11 11 N 1.31620 * 119.99686 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 120.00074 * 179.97438 * 10 8 7 13 13 H 1.48492 * 109.47142 * 89.99979 * 12 10 8 14 14 H 1.48501 * 109.47112 * 210.00268 * 12 10 8 15 15 H 1.48498 * 109.46997 * 330.00246 * 12 10 8 16 16 C 1.54916 * 101.58485 * 324.49716 * 5 4 2 17 17 N 1.47030 * 109.88299 * 238.98010 * 2 1 3 18 18 C 1.34774 * 125.64341 * 61.66264 * 17 2 1 19 19 O 1.21275 * 120.00170 * 355.32250 * 18 17 2 20 20 C 1.50702 * 119.99580 * 175.31978 * 18 17 2 21 21 C 1.53171 * 109.54432 * 273.83311 * 20 18 17 22 22 C 1.53105 * 109.15668 * 183.24236 * 21 20 18 23 23 O 1.42912 * 109.48845 * 57.47280 * 22 21 20 24 24 C 1.42899 * 114.09333 * 298.89111 * 23 22 21 25 25 C 1.53093 * 109.41770 * 61.16006 * 24 23 22 26 26 H 1.08998 * 109.47252 * 181.01779 * 1 2 3 27 27 H 1.09003 * 109.46592 * 301.01779 * 1 2 3 28 28 H 1.08996 * 109.46994 * 61.01976 * 1 2 3 29 29 H 1.09000 * 110.71967 * 259.96802 * 4 2 1 30 30 H 1.08994 * 110.71796 * 23.07161 * 4 2 1 31 31 H 0.97003 * 120.00148 * 341.34625 * 7 5 4 32 32 H 0.97002 * 119.99570 * 179.97438 * 11 10 8 33 33 H 1.09000 * 110.36429 * 278.17460 * 16 5 4 34 34 H 1.09002 * 110.37039 * 155.84679 * 16 5 4 35 35 H 1.09001 * 109.54187 * 34.01438 * 20 18 17 36 36 H 1.09003 * 109.52575 * 303.05691 * 21 20 18 37 37 H 1.09001 * 109.52604 * 63.24809 * 21 20 18 38 38 H 1.09003 * 109.40738 * 297.49455 * 22 21 20 39 39 H 1.09000 * 109.49192 * 177.50629 * 22 21 20 40 40 H 1.08999 * 109.47919 * 301.17148 * 24 23 22 41 41 H 1.09006 * 109.48775 * 181.14918 * 24 23 22 42 42 H 1.08999 * 109.51792 * 182.48318 * 25 24 23 43 43 H 1.08994 * 109.57625 * 62.32326 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9007 1.0250 0.0000 4 6 2.0549 -0.7513 1.2417 5 6 3.2876 -1.5152 0.6904 6 1 3.4852 -2.4129 1.2763 7 7 4.4674 -0.6478 0.6485 8 6 5.7189 -1.1975 0.5658 9 1 5.8361 -2.2706 0.5317 10 6 6.8368 -0.3756 0.5256 11 7 6.6939 0.9322 0.5676 12 14 8.5440 -1.1255 0.4134 13 1 8.9201 -1.2888 -1.0138 14 1 9.5222 -0.2320 1.0840 15 1 8.5467 -2.4521 1.0809 16 6 2.8145 -1.8785 -0.7394 17 7 2.0301 -0.7125 -1.1849 18 6 1.8083 -0.3581 -2.4662 19 8 1.0760 0.5749 -2.7192 20 6 2.4704 -1.1213 -3.5844 21 6 3.8633 -0.5407 -3.8465 22 6 4.4953 -1.2684 -5.0361 23 8 3.6466 -1.1405 -6.1788 24 6 2.3471 -1.7095 -6.0068 25 6 1.6279 -0.9980 -4.8578 26 1 -0.3634 -1.0275 0.0183 27 1 -0.3632 0.5296 0.8808 28 1 -0.3633 0.4979 -0.8990 29 1 2.3530 -0.0488 2.0200 30 1 1.3040 -1.4459 1.6181 31 1 4.3622 0.3160 0.6794 32 1 7.4751 1.5065 0.5399 33 1 2.1886 -2.7706 -0.7166 34 1 3.6716 -2.0320 -1.3951 35 1 2.5594 -2.1714 -3.3063 36 1 3.7782 0.5218 -4.0745 37 1 4.4865 -0.6756 -2.9624 38 1 4.6188 -2.3234 -4.7913 39 1 5.4687 -0.8297 -5.2554 40 1 2.4425 -2.7702 -5.7747 41 1 1.7728 -1.5887 -6.9254 42 1 0.6539 -1.4597 -4.6963 43 1 1.4952 0.0549 -5.1062 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987711270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:20 Heat of formation + Delta-G solvation = -79.244324 kcal Electronic energy + Delta-G solvation = -23769.331134 eV Core-core repulsion = 20428.227633 eV Total energy + Delta-G solvation = -3341.103501 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.28273 -38.82579 -37.24380 -34.01931 -33.64168 -31.48252 -31.27498 -30.92052 -28.46023 -25.88192 -25.43119 -23.79126 -23.48735 -22.18539 -20.45253 -19.76566 -18.52248 -17.34780 -16.82493 -16.26110 -15.95764 -15.72317 -14.82141 -14.70554 -14.39166 -14.16792 -13.86329 -13.50349 -13.32931 -13.17528 -12.87438 -12.68925 -12.27596 -12.21964 -11.88359 -11.66986 -11.40173 -11.24258 -11.18874 -10.96640 -10.78644 -10.65707 -10.61250 -10.38829 -10.34440 -10.04744 -9.77552 -9.75094 -9.21337 -9.03927 -8.21580 -7.08719 -5.87509 -3.18176 2.96391 3.35230 3.36208 3.41313 3.43542 3.91947 4.48218 4.66516 4.77178 4.87446 5.03795 5.09088 5.12624 5.24809 5.29446 5.34798 5.47654 5.48959 5.55368 5.64851 5.65844 5.70550 5.72019 5.79189 5.86371 5.92513 5.98313 6.09089 6.14939 6.20024 6.29483 6.35747 6.40992 6.43692 6.57704 6.67051 6.82942 7.21809 7.58792 7.97063 8.29602 8.55192 9.41518 9.96896 10.31641 11.34257 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012696 B = 0.006878 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.900860 B = 4069.827970 C = 5762.837931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.138 3.862 3 H 0.072 0.928 4 C -0.137 4.137 5 C 0.169 3.831 6 H 0.070 0.930 7 N -0.712 5.712 8 C -0.248 4.248 9 H 0.072 0.928 10 C -0.007 4.007 11 N -0.927 5.927 12 Si 0.905 3.095 13 H -0.289 1.289 14 H -0.291 1.291 15 H -0.281 1.281 16 C 0.068 3.932 17 N -0.597 5.597 18 C 0.537 3.463 19 O -0.553 6.553 20 C -0.101 4.101 21 C -0.145 4.145 22 C 0.065 3.935 23 O -0.385 6.385 24 C 0.063 3.937 25 C -0.137 4.137 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.386 0.614 32 H 0.257 0.743 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.098 0.902 40 H 0.048 0.952 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.106 -7.113 -6.263 13.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 H 0.090 0.910 4 C -0.176 4.176 5 C 0.056 3.944 6 H 0.088 0.912 7 N -0.352 5.352 8 C -0.379 4.379 9 H 0.090 0.910 10 C -0.204 4.204 11 N -0.574 5.574 12 Si 0.736 3.264 13 H -0.216 1.216 14 H -0.217 1.217 15 H -0.207 1.207 16 C -0.058 4.058 17 N -0.329 5.329 18 C 0.325 3.675 19 O -0.431 6.431 20 C -0.123 4.123 21 C -0.183 4.183 22 C -0.011 4.011 23 O -0.304 6.304 24 C -0.014 4.014 25 C -0.176 4.176 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.220 0.780 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.070 0.930 39 H 0.116 0.884 40 H 0.067 0.933 41 H 0.111 0.889 42 H 0.090 0.910 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.266 -6.592 -6.616 13.878 hybrid contribution 0.908 -0.204 0.296 0.977 sum -9.358 -6.797 -6.320 13.180 Atomic orbital electron populations 1.22144 0.95519 1.01598 1.02514 1.21472 0.93538 0.96653 0.84873 0.90980 1.23028 0.98127 0.99977 0.96467 1.21320 0.87042 0.94396 0.91602 0.91229 1.42326 1.00194 1.05201 1.87437 1.19196 0.83330 0.91767 1.43584 0.91024 1.24755 0.97882 0.95300 1.02460 1.69666 1.29128 1.01993 1.56633 0.86233 0.84525 0.78027 0.77623 1.21635 1.21742 1.20684 1.23397 0.94437 0.86878 1.01095 1.48424 1.51533 1.28485 1.04506 1.20085 0.80863 0.84127 0.82414 1.90624 1.38550 1.30499 1.83450 1.21260 0.96615 1.00414 0.93960 1.22134 0.94572 1.01324 1.00274 1.22587 0.93718 0.99473 0.85355 1.87921 1.24374 1.80498 1.37581 1.22565 0.84186 0.96025 0.98617 1.22053 0.98395 1.03349 0.93758 0.93008 0.92170 0.91442 0.89867 0.90767 0.78016 0.93343 0.92849 0.90191 0.89476 0.90558 0.88820 0.92992 0.88367 0.93322 0.88857 0.90970 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.12 37.16 0.34 -1.92 16 2 C 0.14 2.24 3.48 -66.94 -0.23 2.01 16 3 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 4 C -0.14 -2.07 6.05 -24.90 -0.15 -2.22 16 5 C 0.17 2.98 3.69 -65.78 -0.24 2.73 16 6 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 7 N -0.71 -16.29 5.27 -51.35 -0.27 -16.56 16 8 C -0.25 -6.31 9.98 -15.06 -0.15 -6.46 16 9 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 10 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 11 N -0.93 -26.84 13.06 55.49 0.72 -26.12 16 12 Si 0.91 21.27 29.55 -169.99 -5.02 16.25 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 C 0.07 1.09 6.06 -2.53 -0.02 1.07 16 17 N -0.60 -10.07 3.06 -163.00 -0.50 -10.57 16 18 C 0.54 9.44 6.78 -10.99 -0.07 9.36 16 19 O -0.55 -11.19 14.91 5.56 0.08 -11.10 16 20 C -0.10 -1.48 1.91 -91.59 -0.18 -1.66 16 21 C -0.14 -2.25 5.38 -26.59 -0.14 -2.39 16 22 C 0.07 0.88 6.84 37.21 0.25 1.13 16 23 O -0.38 -5.39 10.77 -35.23 -0.38 -5.77 16 24 C 0.06 0.72 6.84 37.21 0.25 0.98 16 25 C -0.14 -1.80 5.03 -26.59 -0.13 -1.93 16 26 H 0.05 0.68 8.13 -51.93 -0.42 0.25 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.09 6.70 -51.93 -0.35 0.74 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.07 0.93 7.84 -51.93 -0.41 0.53 16 31 H 0.39 9.76 7.82 -40.82 -0.32 9.44 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 1.37 6.77 -51.93 -0.35 1.02 16 35 H 0.09 1.15 7.22 -51.93 -0.37 0.77 16 36 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.09 1.64 7.50 -51.93 -0.39 1.25 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.08 1.26 7.76 -51.93 -0.40 0.86 16 LS Contribution 340.03 15.07 5.12 5.12 Total: -1.00 -30.11 340.03 -8.02 -38.13 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -7.21 Total: 10.20 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -0.57 Total: 0.41 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.05 Total: -53.25 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.30 Total: -16.87 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.11 -8.02 -38.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987711270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.117 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds