Wall clock time and date at job start Tue Mar 31 2020 06:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.41299 * 2 1 4 4 C 1.54909 * 110.36843 * 237.70304 * 2 1 3 5 5 C 1.55153 * 101.58167 * 204.15217 * 4 2 1 6 6 H 1.08999 * 110.72027 * 276.95965 * 5 4 2 7 7 N 1.46499 * 110.72141 * 153.86591 * 5 4 2 8 8 C 1.36933 * 120.00469 * 155.00445 * 7 5 4 9 9 H 1.08001 * 119.99601 * 359.97438 * 8 7 5 10 10 C 1.38813 * 120.00210 * 180.02562 * 8 7 5 11 11 N 1.31622 * 119.99921 * 179.97438 * 10 8 7 12 12 Si 1.86793 * 119.99969 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47210 * 90.00535 * 12 10 8 14 14 H 1.48503 * 109.47009 * 210.00489 * 12 10 8 15 15 H 1.48495 * 109.47139 * 330.00205 * 12 10 8 16 16 C 1.54342 * 103.02179 * 35.30672 * 5 4 2 17 17 N 1.47022 * 107.26118 * 338.13917 * 16 5 4 18 18 C 1.34780 * 125.64473 * 178.85060 * 17 16 5 19 19 O 1.21272 * 119.99956 * 184.77147 * 18 17 16 20 20 C 1.50700 * 119.99697 * 4.49429 * 18 17 16 21 21 C 1.53175 * 109.54453 * 264.85677 * 20 18 17 22 22 C 1.53089 * 109.16480 * 183.15564 * 21 20 18 23 23 O 1.42909 * 109.41484 * 57.61056 * 22 21 20 24 24 C 1.42902 * 114.09510 * 298.83850 * 23 22 21 25 25 C 1.53098 * 109.41263 * 61.16242 * 24 23 22 26 26 H 1.09001 * 109.47157 * 297.70725 * 1 2 3 27 27 H 1.09005 * 109.47177 * 57.70381 * 1 2 3 28 28 H 1.09000 * 109.47375 * 177.70961 * 1 2 3 29 29 H 1.09004 * 111.00423 * 322.22472 * 4 2 1 30 30 H 1.09000 * 111.00411 * 86.07591 * 4 2 1 31 31 H 0.97009 * 119.99504 * 334.99611 * 7 5 4 32 32 H 0.96997 * 120.00267 * 179.97438 * 11 10 8 33 33 H 1.09003 * 109.98787 * 218.66442 * 16 5 4 34 34 H 1.08999 * 109.77769 * 97.49870 * 16 5 4 35 35 H 1.08997 * 109.54743 * 25.12585 * 20 18 17 36 36 H 1.09007 * 109.52062 * 303.06044 * 21 20 18 37 37 H 1.09002 * 109.52492 * 63.24924 * 21 20 18 38 38 H 1.09003 * 109.48493 * 297.62808 * 22 21 20 39 39 H 1.09007 * 109.48328 * 177.58935 * 22 21 20 40 40 H 1.08993 * 109.48381 * 301.18007 * 24 23 22 41 41 H 1.08998 * 109.48963 * 181.14412 * 24 23 22 42 42 H 1.09002 * 109.52076 * 182.48680 * 25 24 23 43 43 H 1.09000 * 109.52265 * 62.29605 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0691 -0.7759 -1.2276 5 6 3.4777 -1.1997 -0.7341 6 1 4.1951 -0.3913 -0.8750 7 7 3.9250 -2.4129 -1.4229 8 6 5.2630 -2.6764 -1.5463 9 1 5.9887 -1.9897 -1.1361 10 6 5.6868 -3.8257 -2.1994 11 7 6.9730 -4.0787 -2.3184 12 14 4.4317 -5.0131 -2.9093 13 1 4.1244 -4.6291 -4.3106 14 1 4.9843 -6.3912 -2.8835 15 1 3.1888 -4.9629 -2.0983 16 6 3.2524 -1.4724 0.7683 17 7 2.0430 -0.7383 1.1683 18 6 1.4972 -0.7361 2.4006 19 8 0.4471 -0.1623 2.5976 20 6 2.1885 -1.4521 3.5322 21 6 1.6058 -2.8610 3.6793 22 6 2.2580 -3.5518 4.8797 23 8 2.0413 -2.7676 6.0546 24 6 2.6058 -1.4562 5.9931 25 6 1.9675 -0.6812 4.8373 26 1 -0.3633 0.4778 0.9098 27 1 -0.3634 0.5491 -0.8687 28 1 -0.3634 -1.0268 -0.0411 29 1 1.4511 -1.6481 -1.4407 30 1 2.1398 -0.1265 -2.1001 31 1 3.2732 -3.0296 -1.7915 32 1 7.2691 -4.8819 -2.7744 33 1 4.1081 -1.1188 1.3436 34 1 3.1090 -2.5405 0.9318 35 1 3.2564 -1.5177 3.3239 36 1 0.5293 -2.7952 3.8375 37 1 1.8075 -3.4349 2.7749 38 1 3.3288 -3.6536 4.7030 39 1 1.8163 -4.5391 5.0152 40 1 3.6810 -1.5306 5.8308 41 1 2.4148 -0.9337 6.9304 42 1 2.4280 0.3038 4.7610 43 1 0.8983 -0.5714 5.0190 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987711273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:24 Heat of formation + Delta-G solvation = -72.441582 kcal Electronic energy + Delta-G solvation = -23325.831279 eV Core-core repulsion = 19985.022767 eV Total energy + Delta-G solvation = -3340.808512 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.51829 -39.01761 -37.40810 -34.38534 -33.88100 -31.69034 -31.46421 -31.20977 -28.97706 -26.08522 -25.41920 -23.76531 -23.64960 -22.02576 -20.53411 -20.32467 -18.71290 -17.79824 -16.91569 -16.54496 -16.16968 -15.88330 -15.11947 -14.91522 -14.70278 -14.19186 -13.92657 -13.68411 -13.53191 -13.43033 -12.97440 -12.68415 -12.50076 -12.26335 -12.16013 -11.93884 -11.62890 -11.59381 -11.44547 -11.18082 -10.90653 -10.85727 -10.75836 -10.59384 -10.44812 -10.15998 -9.87974 -9.72208 -9.29051 -9.05700 -8.42696 -7.47754 -5.91213 -3.29633 2.70939 3.09332 3.27553 3.30778 3.36946 3.73028 4.42350 4.46329 4.58117 4.63033 4.83783 4.90001 4.97895 5.02668 5.08691 5.15679 5.31083 5.31864 5.43017 5.46282 5.48001 5.52110 5.54940 5.66293 5.68507 5.72590 5.83382 5.87127 5.93049 5.97560 6.06506 6.11365 6.26368 6.32453 6.38325 6.57602 6.71577 7.02774 7.71398 7.82983 8.27342 8.31271 9.03609 9.75944 9.93954 11.26327 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015917 B = 0.005114 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.685755 B = 5474.218542 C = 6560.782149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.135 3.865 3 H 0.074 0.926 4 C -0.141 4.141 5 C 0.178 3.822 6 H 0.077 0.923 7 N -0.737 5.737 8 C -0.256 4.256 9 H 0.093 0.907 10 C 0.011 3.989 11 N -0.928 5.928 12 Si 0.883 3.117 13 H -0.282 1.282 14 H -0.290 1.290 15 H -0.277 1.277 16 C 0.073 3.927 17 N -0.610 5.610 18 C 0.536 3.464 19 O -0.547 6.547 20 C -0.107 4.107 21 C -0.143 4.143 22 C 0.063 3.937 23 O -0.384 6.384 24 C 0.062 3.938 25 C -0.138 4.138 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.364 0.636 32 H 0.261 0.739 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.097 0.903 40 H 0.052 0.948 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.326 5.848 11.379 16.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.032 3.968 3 H 0.092 0.908 4 C -0.180 4.180 5 C 0.066 3.934 6 H 0.095 0.905 7 N -0.378 5.378 8 C -0.385 4.385 9 H 0.110 0.890 10 C -0.185 4.185 11 N -0.575 5.575 12 Si 0.713 3.287 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.203 1.203 16 C -0.053 4.053 17 N -0.344 5.344 18 C 0.324 3.676 19 O -0.425 6.425 20 C -0.128 4.128 21 C -0.181 4.181 22 C -0.014 4.014 23 O -0.302 6.302 24 C -0.015 4.015 25 C -0.176 4.176 26 H 0.105 0.895 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.198 0.802 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.115 0.885 40 H 0.070 0.930 41 H 0.114 0.886 42 H 0.093 0.907 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.712 6.063 11.682 16.970 hybrid contribution -0.435 -0.928 -0.942 1.392 sum -11.147 5.136 10.740 16.309 Atomic orbital electron populations 1.22199 0.94217 1.02370 1.03302 1.21868 0.94878 0.95345 0.84693 0.90842 1.23220 0.97702 1.00375 0.96722 1.21136 0.93393 0.90548 0.88340 0.90521 1.42731 1.05126 1.23079 1.66843 1.19077 0.81738 1.06006 1.31693 0.88964 1.24675 0.95575 0.98012 1.00273 1.69694 1.12599 1.27808 1.47360 0.86587 0.81190 0.81429 0.79494 1.20884 1.21583 1.20324 1.23248 0.85428 0.96570 1.00008 1.48673 1.28574 1.48261 1.08869 1.20151 0.84729 0.80304 0.82375 1.90585 1.22657 1.46262 1.83043 1.21329 1.01263 0.96186 0.94023 1.22103 1.01742 0.94337 0.99891 1.22585 0.99805 0.94518 0.84446 1.87925 1.78426 1.25714 1.38166 1.22594 0.96695 0.83425 0.98782 1.22070 1.03526 0.98831 0.93180 0.89550 0.92480 0.92949 0.90823 0.89883 0.80239 0.92841 0.91835 0.91038 0.88985 0.90359 0.90186 0.92626 0.88462 0.92972 0.88619 0.90717 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 8.70 37.16 0.32 -1.87 16 2 C 0.14 1.88 3.78 -66.42 -0.25 1.63 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 4 C -0.14 -2.03 6.13 -24.58 -0.15 -2.18 16 5 C 0.18 3.05 3.60 -66.09 -0.24 2.81 16 6 H 0.08 1.34 8.09 -51.93 -0.42 0.92 16 7 N -0.74 -15.86 4.96 -51.65 -0.26 -16.11 16 8 C -0.26 -6.67 10.44 -15.06 -0.16 -6.83 16 9 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 10 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 11 N -0.93 -27.76 13.97 55.49 0.78 -26.99 16 12 Si 0.88 20.94 27.73 -169.99 -4.71 16.22 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.28 -6.17 6.52 56.52 0.37 -5.80 16 16 C 0.07 1.15 5.91 -3.05 -0.02 1.13 16 17 N -0.61 -9.00 3.24 -163.04 -0.53 -9.53 16 18 C 0.54 8.00 6.68 -10.98 -0.07 7.93 16 19 O -0.55 -9.38 13.73 5.56 0.08 -9.30 16 20 C -0.11 -1.32 2.24 -91.59 -0.21 -1.53 16 21 C -0.14 -1.68 5.40 -26.59 -0.14 -1.82 16 22 C 0.06 0.67 6.84 37.20 0.25 0.93 16 23 O -0.38 -4.56 10.77 -35.23 -0.38 -4.94 16 24 C 0.06 0.61 6.84 37.21 0.25 0.87 16 25 C -0.14 -1.55 5.14 -26.59 -0.14 -1.68 16 26 H 0.09 1.31 5.79 -51.93 -0.30 1.01 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 29 H 0.07 1.09 7.91 -51.93 -0.41 0.68 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.36 7.81 5.62 -40.82 -0.23 7.58 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.06 0.96 7.74 -51.93 -0.40 0.56 16 34 H 0.07 1.19 8.03 -51.93 -0.42 0.77 16 35 H 0.09 1.10 6.97 -51.93 -0.36 0.74 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 1.07 7.76 -51.93 -0.40 0.67 16 LS Contribution 336.18 15.07 5.07 5.07 Total: -1.00 -30.47 336.18 -7.78 -38.26 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -7.19 Total: 7.73 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -0.64 Total: -0.41 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.01 Total: -52.63 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.30 Total: -14.25 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.71 Total: 16.22 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.47 -7.78 -38.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987711273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.183 kcal (2) G-P(sol) polarization free energy of solvation -30.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds