Wall clock time and date at job start Tue Mar 31 2020 06:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.99878 * 2 1 4 4 C 1.54340 * 109.99057 * 238.96151 * 2 1 3 5 5 C 1.55154 * 103.01982 * 218.66438 * 4 2 1 6 6 H 1.09001 * 111.00459 * 153.37828 * 5 4 2 7 7 N 1.46502 * 111.04133 * 277.21776 * 5 4 2 8 8 C 1.36930 * 120.00069 * 198.67154 * 7 5 4 9 9 H 1.07997 * 120.00339 * 359.97438 * 8 7 5 10 10 C 1.38821 * 119.99846 * 180.02562 * 8 7 5 11 11 N 1.31617 * 119.99738 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99928 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47408 * 59.99784 * 12 10 8 14 14 H 1.48502 * 109.46603 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.46920 * 299.99681 * 12 10 8 16 16 C 1.54913 * 101.58497 * 35.30804 * 5 4 2 17 17 N 1.47030 * 109.88562 * 121.09941 * 2 1 3 18 18 C 1.34776 * 125.64049 * 298.39269 * 17 2 1 19 19 O 1.21280 * 120.00564 * 4.71231 * 18 17 2 20 20 C 1.50703 * 119.99639 * 184.70922 * 18 17 2 21 21 C 1.53178 * 109.54499 * 213.10642 * 20 18 17 22 22 C 1.53091 * 109.16653 * 183.15399 * 21 20 18 23 23 O 1.42904 * 109.41338 * 57.60468 * 22 21 20 24 24 C 1.42899 * 114.10263 * 298.84763 * 23 22 21 25 25 C 1.53085 * 109.41616 * 61.15402 * 24 23 22 26 26 H 1.09003 * 109.47068 * 298.90395 * 1 2 3 27 27 H 1.08989 * 109.47220 * 58.90413 * 1 2 3 28 28 H 1.09000 * 109.47504 * 178.90972 * 1 2 3 29 29 H 1.08995 * 110.84908 * 100.19842 * 4 2 1 30 30 H 1.09000 * 110.66764 * 337.04891 * 4 2 1 31 31 H 0.97002 * 119.99460 * 18.66785 * 7 5 4 32 32 H 0.96997 * 119.99866 * 180.02562 * 11 10 8 33 33 H 1.08998 * 110.37205 * 204.14952 * 16 5 4 34 34 H 1.09002 * 110.36429 * 81.82345 * 16 5 4 35 35 H 1.09001 * 109.54237 * 333.28365 * 20 18 17 36 36 H 1.09002 * 109.52542 * 63.24576 * 21 20 18 37 37 H 1.09003 * 109.57243 * 303.09449 * 21 20 18 38 38 H 1.09007 * 109.47803 * 297.62951 * 22 21 20 39 39 H 1.08999 * 109.49329 * 177.59942 * 22 21 20 40 40 H 1.08996 * 109.48159 * 181.14524 * 24 23 22 41 41 H 1.09008 * 109.47856 * 301.17181 * 24 23 22 42 42 H 1.09000 * 109.52658 * 182.48630 * 25 24 23 43 43 H 1.08998 * 109.52400 * 62.29996 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7479 -1.2427 5 6 3.2863 -1.5184 -0.6915 6 1 3.4806 -2.4156 -1.2791 7 7 4.4704 -0.6570 -0.6464 8 6 5.7189 -1.2132 -0.5637 9 1 5.8308 -2.2868 -0.5312 10 6 6.8410 -0.3969 -0.5204 11 7 6.7046 0.9117 -0.5584 12 14 8.5442 -1.1556 -0.4082 13 1 8.7780 -2.0243 -1.5897 14 1 9.5651 -0.0776 -0.3761 15 1 8.6436 -1.9679 0.8309 16 6 2.8099 -1.8826 0.7369 17 7 2.0301 -0.7142 1.1839 18 6 1.8074 -0.3621 2.4657 19 8 1.0738 0.5696 2.7200 20 6 2.4701 -1.1261 3.5829 21 6 1.5425 -1.1595 4.8015 22 6 2.2550 -1.8687 5.9561 23 8 3.4799 -1.1920 6.2457 24 6 4.4060 -1.1705 5.1576 25 6 3.7800 -0.4334 3.9710 26 1 -0.3633 0.4967 0.8997 27 1 -0.3633 0.5307 -0.8799 28 1 -0.3634 -1.0275 -0.0196 29 1 2.3597 -0.0451 -2.0192 30 1 1.3066 -1.4405 -1.6225 31 1 4.3700 0.3074 -0.6752 32 1 7.4886 1.4821 -0.5286 33 1 3.6655 -2.0413 1.3933 34 1 2.1801 -2.7718 0.7115 35 1 2.6780 -2.1446 3.2549 36 1 0.6298 -1.6997 4.5499 37 1 1.2927 -0.1408 5.0982 38 1 2.4674 -2.8999 5.6737 39 1 1.6161 -1.8579 6.8392 40 1 5.3166 -0.6567 5.4655 41 1 4.6466 -2.1926 4.8648 42 1 4.4674 -0.4542 3.1254 43 1 3.5764 0.6003 4.2505 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987711277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:28 Heat of formation + Delta-G solvation = -79.139569 kcal Electronic energy + Delta-G solvation = -23732.615251 eV Core-core repulsion = 20391.516293 eV Total energy + Delta-G solvation = -3341.098959 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.28031 -38.84026 -37.24095 -34.01886 -33.63572 -31.46623 -31.26853 -30.97559 -28.46062 -25.87930 -25.44537 -23.79070 -23.50330 -22.19538 -20.47738 -19.75153 -18.50951 -17.34920 -16.84480 -16.26903 -15.97680 -15.70671 -14.81690 -14.70208 -14.40944 -14.16377 -13.86450 -13.50514 -13.34714 -13.17807 -12.87734 -12.70716 -12.29078 -12.21737 -11.87948 -11.67071 -11.43144 -11.25084 -11.19003 -10.95171 -10.78246 -10.67087 -10.62347 -10.38570 -10.36225 -10.06072 -9.77299 -9.76595 -9.20968 -9.03487 -8.21714 -7.08704 -5.87251 -3.17945 2.95931 3.35217 3.36247 3.41180 3.42868 3.90582 4.48399 4.66190 4.77024 4.86013 5.02781 5.08810 5.12636 5.24206 5.29830 5.34242 5.47033 5.48838 5.55308 5.64190 5.65603 5.68966 5.69742 5.79502 5.86383 5.91930 5.98004 6.07436 6.15168 6.19906 6.26812 6.34579 6.40163 6.42644 6.57545 6.67055 6.82683 7.20490 7.58432 7.96889 8.29872 8.55136 9.41665 9.97025 10.31841 11.34487 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012744 B = 0.006763 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.530308 B = 4138.921416 C = 5806.818894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.138 3.862 3 H 0.072 0.928 4 C -0.137 4.137 5 C 0.169 3.831 6 H 0.070 0.930 7 N -0.711 5.711 8 C -0.249 4.249 9 H 0.071 0.929 10 C -0.007 4.007 11 N -0.928 5.928 12 Si 0.906 3.094 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.285 1.285 16 C 0.068 3.932 17 N -0.597 5.597 18 C 0.537 3.463 19 O -0.552 6.552 20 C -0.101 4.101 21 C -0.138 4.138 22 C 0.063 3.937 23 O -0.385 6.385 24 C 0.065 3.935 25 C -0.144 4.144 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.386 0.614 32 H 0.257 0.743 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.049 0.951 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.053 0.947 42 H 0.091 0.909 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.129 -7.022 6.281 13.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 H 0.090 0.910 4 C -0.176 4.176 5 C 0.056 3.944 6 H 0.088 0.912 7 N -0.351 5.351 8 C -0.379 4.379 9 H 0.089 0.911 10 C -0.204 4.204 11 N -0.575 5.575 12 Si 0.737 3.263 13 H -0.212 1.212 14 H -0.217 1.217 15 H -0.212 1.212 16 C -0.058 4.058 17 N -0.330 5.330 18 C 0.325 3.675 19 O -0.431 6.431 20 C -0.123 4.123 21 C -0.177 4.177 22 C -0.014 4.014 23 O -0.304 6.304 24 C -0.011 4.011 25 C -0.182 4.182 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.220 0.780 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.067 0.933 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.071 0.929 42 H 0.110 0.890 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.304 -6.498 6.652 13.880 hybrid contribution 0.945 -0.218 -0.323 1.022 sum -9.359 -6.716 6.328 13.144 Atomic orbital electron populations 1.22136 0.95484 1.01606 1.02529 1.21468 0.93532 0.96656 0.84886 0.90987 1.23031 0.98133 0.99985 0.96460 1.21322 0.87012 0.94419 0.91611 0.91228 1.42318 1.00159 1.05222 1.87448 1.19154 0.83383 0.91707 1.43705 0.91074 1.24756 0.97883 0.95304 1.02439 1.69652 1.29123 1.02116 1.56576 0.86300 0.84264 0.77858 0.77918 1.21174 1.21670 1.21195 1.23388 0.94486 0.86827 1.01080 1.48435 1.51660 1.28345 1.04511 1.20082 0.80871 0.84123 0.82385 1.90625 1.38461 1.30614 1.83417 1.21262 0.96663 1.00279 0.94073 1.22071 0.97977 1.03289 0.94323 1.22562 0.85969 0.94750 0.98083 1.87916 1.27194 1.77714 1.37557 1.22583 0.92082 0.99796 0.86677 1.22113 0.95720 1.00568 0.99821 0.91424 0.92163 0.93001 0.89849 0.90794 0.78017 0.93285 0.90211 0.92845 0.89451 0.91008 0.89757 0.93277 0.88838 0.88393 0.92917 0.89043 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.13 37.15 0.34 -1.92 16 2 C 0.14 2.24 3.48 -66.94 -0.23 2.01 16 3 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 4 C -0.14 -2.07 6.05 -24.89 -0.15 -2.22 16 5 C 0.17 2.99 3.69 -65.78 -0.24 2.74 16 6 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 7 N -0.71 -16.35 5.27 -51.35 -0.27 -16.62 16 8 C -0.25 -6.35 9.98 -15.06 -0.15 -6.50 16 9 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 10 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 11 N -0.93 -26.89 13.06 55.49 0.72 -26.16 16 12 Si 0.91 21.30 29.55 -169.99 -5.02 16.28 16 13 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 15 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 16 C 0.07 1.10 6.03 -2.53 -0.02 1.08 16 17 N -0.60 -10.11 3.06 -163.01 -0.50 -10.61 16 18 C 0.54 9.46 6.70 -10.98 -0.07 9.38 16 19 O -0.55 -11.19 15.04 5.56 0.08 -11.11 16 20 C -0.10 -1.49 2.10 -91.59 -0.19 -1.68 16 21 C -0.14 -1.80 5.11 -26.59 -0.14 -1.93 16 22 C 0.06 0.72 6.84 37.20 0.25 0.97 16 23 O -0.39 -5.33 10.76 -35.23 -0.38 -5.71 16 24 C 0.07 0.87 6.84 37.20 0.25 1.12 16 25 C -0.14 -2.22 5.40 -26.59 -0.14 -2.36 16 26 H 0.07 1.09 6.69 -51.93 -0.35 0.74 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.07 0.93 7.84 -51.93 -0.41 0.52 16 31 H 0.39 9.78 7.82 -40.82 -0.32 9.46 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.08 1.38 7.28 -51.93 -0.38 1.00 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.17 6.83 -51.93 -0.35 0.82 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 1.25 7.76 -51.93 -0.40 0.84 16 38 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 42 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 43 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 341.12 15.07 5.14 5.14 Total: -1.00 -30.18 341.12 -8.06 -38.24 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -7.25 Total: 10.15 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -0.59 Total: 0.41 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.05 Total: -53.39 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.30 Total: -16.82 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.18 -8.06 -38.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987711277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.902 kcal (2) G-P(sol) polarization free energy of solvation -30.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds