Wall clock time and date at job start Tue Mar 31 2020 06:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.00063 * 2 1 4 4 C 1.54322 * 109.87878 * 121.09883 * 2 1 3 5 5 C 1.55160 * 102.94213 * 97.22317 * 4 2 1 6 6 H 1.08990 * 111.00466 * 277.38732 * 5 4 2 7 7 N 1.46499 * 111.00310 * 153.57093 * 5 4 2 8 8 C 1.36935 * 119.99926 * 155.00146 * 7 5 4 9 9 H 1.08005 * 119.99877 * 359.97438 * 8 7 5 10 10 C 1.38811 * 120.00369 * 179.73019 * 8 7 5 11 11 N 1.31617 * 119.99773 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00451 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47050 * 59.99408 * 12 10 8 14 14 H 1.48496 * 109.47289 * 179.97438 * 12 10 8 15 15 H 1.48508 * 109.46855 * 299.99389 * 12 10 8 16 16 C 1.54916 * 101.57979 * 35.50160 * 5 4 2 17 17 N 1.47024 * 109.87982 * 238.90684 * 2 1 3 18 18 C 1.34771 * 125.65184 * 59.48022 * 17 2 1 19 19 O 1.21365 * 119.99765 * 359.97438 * 18 17 2 20 20 C 1.49088 * 120.00261 * 180.02562 * 18 17 2 21 21 O 1.20780 * 119.99858 * 359.97438 * 20 18 17 22 22 C 1.50699 * 120.00020 * 180.02562 * 20 18 17 23 23 C 1.53001 * 109.46991 * 179.97438 * 22 20 18 24 24 C 1.53002 * 109.47171 * 299.99513 * 22 20 18 25 25 C 1.52996 * 109.47233 * 59.99895 * 22 20 18 26 26 H 1.08997 * 109.46807 * 298.90441 * 1 2 3 27 27 H 1.09006 * 109.47168 * 58.89841 * 1 2 3 28 28 H 1.08998 * 109.47229 * 178.90325 * 1 2 3 29 29 H 1.09000 * 110.72210 * 338.85891 * 4 2 1 30 30 H 1.09001 * 110.71965 * 215.58140 * 4 2 1 31 31 H 0.97005 * 120.00261 * 335.00271 * 7 5 4 32 32 H 0.97004 * 120.00382 * 180.02562 * 11 10 8 33 33 H 1.08999 * 110.36551 * 81.83170 * 16 5 4 34 34 H 1.09004 * 110.36145 * 204.15329 * 16 5 4 35 35 H 1.08999 * 109.47110 * 59.99556 * 23 22 20 36 36 H 1.09004 * 109.46953 * 180.02562 * 23 22 20 37 37 H 1.09000 * 109.47177 * 299.99358 * 23 22 20 38 38 H 1.09005 * 109.46956 * 60.00006 * 24 22 20 39 39 H 1.08991 * 109.47167 * 179.97438 * 24 22 20 40 40 H 1.08999 * 109.47100 * 300.00548 * 24 22 20 41 41 H 1.08996 * 109.47404 * 59.99806 * 25 22 20 42 42 H 1.09004 * 109.47288 * 180.02562 * 25 22 20 43 43 H 1.08998 * 109.47181 * 299.99897 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 1.2427 5 6 2.3517 -2.1696 0.6923 6 1 1.4452 -2.7739 0.6609 7 7 3.3936 -2.8313 1.4815 8 6 3.4567 -4.1986 1.5226 9 1 2.7381 -4.7891 0.9735 10 6 4.4472 -4.8257 2.2658 11 7 5.3261 -4.1061 2.9307 12 14 4.5338 -6.6909 2.3213 13 1 4.7282 -7.2185 0.9469 14 1 5.6733 -7.1083 3.1771 15 1 3.2689 -7.2286 2.8837 16 6 2.8568 -1.8498 -0.7369 17 7 2.0300 -0.7140 -1.1840 18 6 1.7741 -0.3853 -2.4657 19 8 1.0755 0.5745 -2.7181 20 6 2.3482 -1.2014 -3.5735 21 8 3.0431 -2.1568 -3.3222 22 6 2.0625 -0.8335 -5.0067 23 6 2.7657 -1.8236 -5.9373 24 6 0.5536 -0.8830 -5.2549 25 6 2.5787 0.5800 -5.2830 26 1 -0.3633 0.4967 0.8996 27 1 -0.3634 0.5309 -0.8800 28 1 -0.3633 -1.0275 -0.0197 29 1 1.2917 -0.7891 2.0200 30 1 2.9656 -0.2833 1.6182 31 1 4.0387 -2.3010 1.9750 32 1 6.0186 -4.5443 3.4498 33 1 3.9091 -1.5668 -0.7129 34 1 2.7087 -2.7080 -1.3924 35 1 2.3984 -2.8308 -5.7405 36 1 2.5594 -1.5572 -6.9739 37 1 3.8407 -1.7879 -5.7604 38 1 0.0530 -0.1773 -4.5919 39 1 0.3469 -0.6165 -6.2913 40 1 0.1859 -1.8900 -5.0580 41 1 3.6537 0.6154 -5.1061 42 1 2.3717 0.8464 -6.3195 43 1 2.0782 1.2857 -4.6200 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988365849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:44 Heat of formation + Delta-G solvation = -59.657953 kcal Electronic energy + Delta-G solvation = -23313.575616 eV Core-core repulsion = 19973.321443 eV Total energy + Delta-G solvation = -3340.254173 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.92056 -39.01936 -37.51848 -35.83083 -34.18979 -31.68347 -31.31219 -28.39633 -27.55242 -27.44767 -26.00713 -25.34139 -23.81513 -22.32752 -20.57478 -19.64036 -18.38910 -17.38150 -17.02763 -16.24182 -15.84920 -15.42443 -15.02923 -14.45286 -14.29003 -13.88657 -13.70754 -13.38207 -13.12201 -13.01851 -12.96845 -12.53863 -12.49392 -12.31938 -12.25548 -11.94924 -11.90963 -11.70645 -11.51861 -11.17415 -11.11164 -11.03030 -10.85937 -10.67289 -10.50085 -10.28448 -10.03222 -9.77490 -9.22725 -8.90641 -8.47635 -7.09627 -5.85119 -3.16008 1.10317 2.75186 3.10900 3.41066 3.45799 3.46424 4.03777 4.46510 4.54645 4.71550 4.72694 4.95300 5.10136 5.17796 5.20220 5.42311 5.43357 5.47454 5.57141 5.59963 5.63945 5.67345 5.73639 5.79768 5.80832 5.84794 5.96912 6.03635 6.11720 6.12361 6.16241 6.21081 6.25980 6.40999 6.49188 6.53567 6.82310 7.07651 7.59643 7.64180 8.07113 8.32266 9.44257 9.96879 10.32039 11.36815 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018901 B = 0.004703 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.032792 B = 5952.690273 C = 6965.450775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.134 3.866 3 H 0.074 0.926 4 C -0.139 4.139 5 C 0.172 3.828 6 H 0.068 0.932 7 N -0.710 5.710 8 C -0.249 4.249 9 H 0.072 0.928 10 C -0.007 4.007 11 N -0.930 5.930 12 Si 0.909 3.091 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.285 1.285 16 C 0.067 3.933 17 N -0.581 5.581 18 C 0.486 3.514 19 O -0.524 6.524 20 C 0.354 3.646 21 O -0.404 6.404 22 C -0.093 4.093 23 C -0.136 4.136 24 C -0.142 4.142 25 C -0.142 4.142 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.387 0.613 32 H 0.257 0.743 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.393 9.498 -13.742 18.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 H 0.092 0.908 4 C -0.178 4.178 5 C 0.060 3.940 6 H 0.086 0.914 7 N -0.349 5.349 8 C -0.380 4.380 9 H 0.090 0.910 10 C -0.204 4.204 11 N -0.577 5.577 12 Si 0.739 3.261 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.058 4.058 17 N -0.315 5.315 18 C 0.271 3.729 19 O -0.402 6.402 20 C 0.223 3.777 21 O -0.272 6.272 22 C -0.094 4.094 23 C -0.194 4.194 24 C -0.200 4.200 25 C -0.199 4.199 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.222 0.778 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.366 9.268 -13.771 18.588 hybrid contribution 0.470 -0.880 0.221 1.022 sum -7.896 8.388 -13.550 17.785 Atomic orbital electron populations 1.22130 0.94654 1.02473 1.02618 1.21656 0.94670 0.96080 0.84531 0.90767 1.23054 1.01827 0.97274 0.95650 1.21335 0.92931 0.91200 0.88567 0.91435 1.42296 1.33362 1.04074 1.55209 1.19214 1.11193 0.82462 1.25155 0.91005 1.24757 0.97767 0.98029 0.99800 1.69648 1.18598 1.34318 1.35184 0.86254 0.77096 0.85247 0.77505 1.21091 1.21606 1.21120 1.23861 0.94746 0.87416 0.99802 1.48785 1.48127 1.30247 1.04307 1.20570 0.82900 0.86114 0.83283 1.90646 1.38167 1.28235 1.83197 1.24901 0.77899 0.83029 0.91910 1.90457 1.26872 1.23776 1.86087 1.20926 0.98679 0.98401 0.91435 1.21786 1.00792 0.98507 0.98275 1.21890 0.92238 1.02808 1.03015 1.21888 1.01091 0.94023 1.02943 0.91659 0.91379 0.92342 0.89928 0.90460 0.77834 0.93274 0.90975 0.89438 0.91921 0.91641 0.91936 0.90148 0.91421 0.92595 0.92610 0.91405 0.90161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.05 37.16 0.34 -1.76 16 2 C 0.13 1.95 3.50 -66.95 -0.23 1.71 16 3 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.14 -2.17 6.14 -24.90 -0.15 -2.33 16 5 C 0.17 3.31 3.71 -65.78 -0.24 3.06 16 6 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 7 N -0.71 -17.09 5.24 -51.35 -0.27 -17.36 16 8 C -0.25 -6.72 9.96 -15.06 -0.15 -6.87 16 9 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 10 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 11 N -0.93 -27.37 13.06 55.49 0.72 -26.65 16 12 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 C 0.07 1.23 5.76 -2.52 -0.01 1.22 16 17 N -0.58 -9.40 3.08 -163.66 -0.50 -9.90 16 18 C 0.49 7.61 7.36 -11.76 -0.09 7.52 16 19 O -0.52 -8.33 12.29 5.48 0.07 -8.26 16 20 C 0.35 5.17 6.00 -29.81 -0.18 4.99 16 21 O -0.40 -6.83 13.39 5.98 0.08 -6.75 16 22 C -0.09 -1.05 0.76 -155.66 -0.12 -1.17 16 23 C -0.14 -1.40 7.76 37.16 0.29 -1.11 16 24 C -0.14 -1.44 8.29 37.16 0.31 -1.13 16 25 C -0.14 -1.45 8.29 37.16 0.31 -1.14 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.94 6.76 -51.93 -0.35 0.59 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.08 1.19 7.83 -51.93 -0.41 0.78 16 30 H 0.08 1.22 8.00 -51.93 -0.42 0.81 16 31 H 0.39 9.86 7.76 -40.82 -0.32 9.54 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 34 H 0.09 1.71 6.16 -51.93 -0.32 1.39 16 35 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 38 H 0.08 0.91 6.43 -51.93 -0.33 0.58 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.92 6.43 -51.93 -0.33 0.59 16 LS Contribution 343.09 15.07 5.17 5.17 Total: -1.00 -29.57 343.09 -6.88 -36.45 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -7.09 Total: 7.63 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -0.03 Total: 2.71 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.05 Total: -53.92 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.15 Total: -15.01 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.57 -6.88 -36.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988365849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.210 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds