Wall clock time and date at job start Tue Mar 31 2020 07:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.45421 * 2 1 4 4 C 1.54513 * 110.62496 * 237.31745 * 2 1 3 5 5 C 1.54480 * 104.06308 * 241.29615 * 4 2 1 6 6 O 1.44427 * 104.80338 * 23.97766 * 5 4 2 7 7 C 1.44428 * 105.27673 * 319.48983 * 6 5 4 8 8 H 1.08997 * 110.46628 * 281.63387 * 7 6 5 9 9 C 1.50692 * 110.37333 * 159.34136 * 7 6 5 10 10 O 1.21284 * 120.00045 * 359.61897 * 9 7 6 11 11 N 1.34779 * 120.00005 * 179.62163 * 9 7 6 12 12 C 1.46929 * 120.62811 * 180.02562 * 11 9 7 13 13 C 1.53196 * 108.77486 * 126.39016 * 12 11 9 14 14 C 1.53037 * 109.31315 * 54.63188 * 13 12 11 15 15 N 1.46498 * 109.45940 * 178.61404 * 14 13 12 16 16 C 1.36943 * 120.00047 * 204.99777 * 15 14 13 17 17 H 1.08001 * 119.99712 * 0.02562 * 16 15 14 18 18 C 1.38808 * 119.99886 * 179.97438 * 16 15 14 19 19 N 1.31615 * 120.00162 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99854 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47288 * 60.00294 * 20 18 16 22 22 H 1.48500 * 109.47066 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47155 * 300.00234 * 20 18 16 24 24 C 1.53043 * 109.53875 * 298.63222 * 14 13 12 25 25 C 1.46918 * 120.63268 * 359.97438 * 11 9 7 26 26 H 1.09004 * 109.46436 * 297.38819 * 1 2 3 27 27 H 1.08996 * 109.47489 * 57.39106 * 1 2 3 28 28 H 1.09003 * 109.47140 * 177.40101 * 1 2 3 29 29 H 1.08999 * 110.50832 * 359.93808 * 4 2 1 30 30 H 1.08998 * 110.51026 * 122.51021 * 4 2 1 31 31 H 1.08995 * 110.37339 * 142.81281 * 5 4 2 32 32 H 1.08998 * 110.37004 * 265.14978 * 5 4 2 33 33 H 1.08998 * 109.59209 * 6.59831 * 12 11 9 34 34 H 1.09003 * 109.58217 * 246.17112 * 12 11 9 35 35 H 1.08998 * 109.49640 * 174.58442 * 13 12 11 36 36 H 1.08994 * 109.49723 * 294.64754 * 13 12 11 37 37 H 1.09004 * 109.46115 * 58.65830 * 14 13 12 38 38 H 0.96996 * 120.00270 * 24.99851 * 15 14 13 39 39 H 0.97005 * 120.00144 * 179.97438 * 19 18 16 40 40 H 1.09003 * 109.49674 * 181.31610 * 24 14 13 41 41 H 1.08990 * 109.49664 * 301.41726 * 24 14 13 42 42 H 1.09008 * 109.58859 * 113.81891 * 25 11 9 43 43 H 1.09000 * 109.70348 * 353.47286 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0213 0.0000 4 6 2.0743 -0.7809 -1.2171 5 6 2.8801 -1.9399 -0.5897 6 8 2.3102 -2.1160 0.7256 7 6 2.0714 -0.7797 1.2188 8 1 3.0001 -0.3326 1.5732 9 6 1.0468 -0.8035 2.3236 10 8 0.5494 -1.8551 2.6668 11 7 0.6830 0.3438 2.9302 12 6 -0.3142 0.3364 4.0092 13 6 0.2784 1.0422 5.2330 14 6 0.7575 2.4385 4.8294 15 7 1.2947 3.1287 6.0046 16 6 1.3083 4.4974 6.0480 17 1 0.9227 5.0679 5.2160 18 6 1.8168 5.1514 7.1618 19 7 2.2862 4.4562 8.1759 20 14 1.8348 7.0184 7.2212 21 1 0.4456 7.5307 7.1076 22 1 2.4245 7.4670 8.5082 23 1 2.6491 7.5417 6.0950 24 6 1.8510 2.3167 3.7656 25 6 1.2770 1.6253 2.5259 26 1 -0.3632 0.4728 0.9125 27 1 -0.3634 0.5538 -0.8656 28 1 -0.3633 -1.0266 -0.0466 29 1 1.2533 -1.1690 -1.8200 30 1 2.7223 -0.1449 -1.8202 31 1 2.7603 -2.8484 -1.1799 32 1 3.9339 -1.6719 -0.5139 33 1 -0.5662 -0.6922 4.2670 34 1 -1.2105 0.8634 3.6819 35 1 -0.4838 1.1288 6.0075 36 1 1.1202 0.4642 5.6141 37 1 -0.0801 3.0073 4.4258 38 1 1.6407 2.6164 6.7521 39 1 2.6419 4.9133 8.9541 40 1 2.2082 3.3105 3.4956 41 1 2.6783 1.7270 4.1602 42 1 0.5109 2.2577 2.0771 43 1 2.0743 1.4493 1.8039 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997013677.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:00 Heat of formation + Delta-G solvation = -66.763843 kcal Electronic energy + Delta-G solvation = -23377.847558 eV Core-core repulsion = 20037.285251 eV Total energy + Delta-G solvation = -3340.562307 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.90704 -38.90020 -37.19067 -34.70484 -33.65817 -32.05924 -31.12249 -30.01438 -29.13402 -27.21216 -24.96146 -23.43229 -23.07157 -22.28775 -21.13139 -20.18937 -18.87689 -17.32728 -17.06001 -16.75780 -16.30242 -15.52020 -14.97767 -14.73321 -14.69939 -14.00347 -13.76005 -13.71611 -13.59464 -13.36157 -13.16832 -12.77359 -12.71279 -12.31319 -11.99387 -11.69362 -11.65692 -11.44060 -11.18754 -11.04899 -10.93197 -10.87505 -10.83095 -10.47140 -10.28852 -10.08756 -9.85987 -9.70078 -9.51234 -8.93532 -8.50835 -7.01169 -5.80294 -3.09880 2.62864 2.83725 3.40489 3.45125 3.46480 3.79758 4.15252 4.31807 4.46775 4.54780 4.74218 4.86780 4.91795 5.03901 5.14992 5.27194 5.31158 5.33354 5.36818 5.40529 5.44374 5.50648 5.57737 5.62891 5.68389 5.70988 5.77275 5.91247 5.98015 6.03654 6.19964 6.32363 6.35286 6.47839 6.48225 6.63930 6.86455 7.00658 7.46840 7.64614 8.23498 8.37868 9.48993 10.06557 10.41126 11.42140 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030281 B = 0.003767 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.442605 B = 7430.830796 C = 7765.601847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 H 0.095 0.905 4 C -0.151 4.151 5 C 0.041 3.959 6 O -0.344 6.344 7 C 0.059 3.941 8 H 0.094 0.906 9 C 0.527 3.473 10 O -0.530 6.530 11 N -0.604 5.604 12 C 0.118 3.882 13 C -0.139 4.139 14 C 0.180 3.820 15 N -0.724 5.724 16 C -0.242 4.242 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.152 4.152 25 C 0.104 3.896 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.048 0.952 38 H 0.384 0.616 39 H 0.256 0.744 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.161 -8.679 -19.026 20.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.135 4.135 3 H 0.113 0.887 4 C -0.188 4.188 5 C -0.036 4.036 6 O -0.262 6.262 7 C -0.002 4.002 8 H 0.112 0.888 9 C 0.314 3.686 10 O -0.406 6.406 11 N -0.339 5.339 12 C -0.005 4.005 13 C -0.178 4.178 14 C 0.069 3.931 15 N -0.364 5.364 16 C -0.373 4.373 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.194 4.194 25 C -0.019 4.019 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.218 0.782 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.494 -9.262 -18.716 20.936 hybrid contribution 0.443 1.241 0.212 1.334 sum -1.051 -8.021 -18.504 20.195 Atomic orbital electron populations 1.22026 0.93498 1.02868 1.02916 1.22568 0.97770 0.99912 0.93212 0.88717 1.23055 1.00639 0.97367 0.97761 1.23481 0.96885 0.99171 0.84065 1.89272 1.82776 1.23507 1.30669 1.22959 0.97914 0.85305 0.94035 0.88820 1.19965 0.82540 0.83648 0.82478 1.90694 1.55140 1.30228 1.64489 1.48101 1.42460 1.06729 1.36615 1.21624 0.90116 1.02210 0.86534 1.22212 1.01430 0.97370 0.96816 1.20156 0.93628 0.90775 0.88528 1.42434 1.73653 1.03672 1.16689 1.19184 1.34228 0.82703 1.01207 0.91217 1.24748 1.01587 0.97814 0.96666 1.69652 1.46796 1.34251 1.07305 0.86284 0.77609 0.85599 0.76767 1.21251 1.21703 1.21283 1.22686 1.00778 1.00437 0.95461 1.21976 0.97721 0.84109 0.98129 0.91189 0.91943 0.91960 0.90223 0.90111 0.88731 0.91974 0.89322 0.91470 0.90485 0.91798 0.93387 0.78239 0.93409 0.90563 0.92150 0.91226 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 8.04 37.16 0.30 -1.23 16 2 C -0.12 -1.05 2.63 -89.05 -0.23 -1.29 16 3 H 0.09 0.70 6.84 -51.93 -0.36 0.35 16 4 C -0.15 -1.12 6.74 -25.16 -0.17 -1.29 16 5 C 0.04 0.36 7.63 37.93 0.29 0.65 16 6 O -0.34 -4.71 10.91 -54.45 -0.59 -5.31 16 7 C 0.06 0.72 2.69 -27.11 -0.07 0.65 16 8 H 0.09 1.03 7.58 -51.93 -0.39 0.63 16 9 C 0.53 7.95 5.47 -10.99 -0.06 7.89 16 10 O -0.53 -10.05 15.96 -13.66 -0.22 -10.27 16 11 N -0.60 -8.30 2.08 -172.81 -0.36 -8.66 16 12 C 0.12 1.67 6.43 -3.71 -0.02 1.65 16 13 C -0.14 -2.27 5.55 -26.61 -0.15 -2.42 16 14 C 0.18 3.33 2.73 -67.89 -0.19 3.14 16 15 N -0.72 -17.49 5.12 -53.38 -0.27 -17.77 16 16 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 17 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 20 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 C -0.15 -2.44 5.66 -26.65 -0.15 -2.59 16 25 C 0.10 1.26 4.95 -3.75 -0.02 1.25 16 26 H 0.07 0.76 5.40 -51.93 -0.28 0.48 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.57 7.74 -51.93 -0.40 0.17 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 1.33 7.01 -51.93 -0.36 0.97 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 38 H 0.38 10.04 7.80 -40.82 -0.32 9.72 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.07 0.77 8.02 -51.92 -0.42 0.35 16 43 H 0.08 0.76 4.48 -51.93 -0.23 0.53 16 LS Contribution 332.44 15.07 5.01 5.01 Total: -1.00 -32.59 332.44 -8.41 -41.00 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.96 Total: 6.82 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -0.72 Total: -0.64 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.09 Total: -53.43 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.81 Total: -15.57 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.59 -8.41 -41.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997013677.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.761 kcal (2) G-P(sol) polarization free energy of solvation -32.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds