Wall clock time and date at job start Tue Mar 31 2020 06:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.32979 * 2 1 4 4 C 1.54484 * 110.37734 * 237.63210 * 2 1 3 5 5 C 1.54508 * 104.06096 * 217.18794 * 4 2 1 6 6 C 1.54480 * 104.06610 * 359.97438 * 5 4 2 7 7 H 1.08997 * 110.46151 * 265.10200 * 6 5 4 8 8 C 1.50693 * 110.37131 * 142.80851 * 6 5 4 9 9 O 1.21281 * 120.00298 * 248.16748 * 8 6 5 10 10 N 1.34783 * 119.99880 * 68.16941 * 8 6 5 11 11 C 1.46928 * 120.62765 * 179.97438 * 10 8 6 12 12 C 1.53188 * 108.77752 * 233.62704 * 11 10 8 13 13 C 1.53049 * 109.31024 * 305.37028 * 12 11 10 14 14 N 1.46506 * 109.45610 * 181.38480 * 13 12 11 15 15 C 1.36929 * 119.99807 * 154.97075 * 14 13 12 16 16 H 1.08004 * 120.00341 * 0.27647 * 15 14 13 17 17 C 1.38815 * 120.00031 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99916 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99958 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46986 * 90.00489 * 19 17 15 21 21 H 1.48496 * 109.47029 * 210.00506 * 19 17 15 22 22 H 1.48499 * 109.47352 * 330.00336 * 19 17 15 23 23 C 1.53036 * 109.52647 * 61.37023 * 13 12 11 24 24 C 1.46927 * 120.63080 * 0.02562 * 10 8 6 25 25 O 1.44424 * 104.80153 * 23.97786 * 6 5 4 26 26 H 1.08990 * 109.47680 * 299.20592 * 1 2 3 27 27 H 1.08999 * 109.47451 * 59.21192 * 1 2 3 28 28 H 1.09007 * 109.46764 * 179.20342 * 1 2 3 29 29 H 1.08998 * 110.50639 * 335.82992 * 4 2 1 30 30 H 1.08998 * 110.51278 * 98.54309 * 4 2 1 31 31 H 1.09003 * 110.50944 * 241.34902 * 5 4 2 32 32 H 1.09001 * 110.50952 * 118.64403 * 5 4 2 33 33 H 1.09013 * 109.58459 * 113.84284 * 11 10 8 34 34 H 1.09000 * 109.70599 * 353.49280 * 11 10 8 35 35 H 1.08999 * 109.50098 * 185.41796 * 12 11 10 36 36 H 1.08998 * 109.49494 * 65.31419 * 12 11 10 37 37 H 1.09001 * 109.45502 * 301.35343 * 13 12 11 38 38 H 0.96999 * 120.00076 * 334.97138 * 14 13 12 39 39 H 0.97000 * 120.00284 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.49877 * 58.58144 * 23 13 12 41 41 H 1.09002 * 109.49371 * 178.67338 * 23 13 12 42 42 H 1.09004 * 109.58549 * 246.15963 * 24 10 8 43 43 H 1.08997 * 109.58234 * 6.44140 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0679 -0.7753 -1.2232 5 6 3.3179 -1.5062 -0.6842 6 6 3.3877 -1.0857 0.8006 7 1 4.0533 -0.2313 0.9237 8 6 3.8534 -2.2391 1.6512 9 8 3.0899 -2.7612 2.4356 10 7 5.1185 -2.6906 1.5402 11 6 5.5873 -3.8139 2.3631 12 6 6.8603 -3.3874 3.1007 13 6 7.8874 -2.8800 2.0857 14 7 9.1184 -2.5021 2.7844 15 6 10.3145 -2.5125 2.1180 16 1 10.3499 -2.7949 1.0761 17 6 11.4809 -2.1539 2.7798 18 7 11.4371 -1.8044 4.0480 19 14 13.1126 -2.1673 1.8705 20 1 13.3473 -0.8364 1.2551 21 1 14.2087 -2.4715 2.8251 22 1 13.0790 -3.2047 0.8085 23 6 7.3227 -1.6614 1.3521 24 6 6.0553 -2.0681 0.5949 25 8 2.0333 -0.7216 1.1450 26 1 -0.3634 0.5014 0.8969 27 1 -0.3634 0.5260 -0.8828 28 1 -0.3633 -1.0277 -0.0143 29 1 1.3277 -1.4936 -1.5756 30 1 2.3430 -0.0860 -2.0214 31 1 4.2110 -1.1784 -1.2162 32 1 3.1957 -2.5860 -0.7704 33 1 5.8048 -4.6696 1.7236 34 1 4.8189 -4.0850 3.0871 35 1 7.2721 -4.2408 3.6393 36 1 6.6225 -2.5914 3.8063 37 1 8.1060 -3.6684 1.3654 38 1 9.0861 -2.2446 3.7190 39 1 12.2521 -1.5542 4.5106 40 1 7.0805 -0.8818 2.0746 41 1 8.0637 -1.2862 0.6462 42 1 6.3110 -2.7809 -0.1891 43 1 5.5939 -1.1862 0.1506 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997024677.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:06 Heat of formation + Delta-G solvation = -72.711495 kcal Electronic energy + Delta-G solvation = -22905.407079 eV Core-core repulsion = 19564.586863 eV Total energy + Delta-G solvation = -3340.820217 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.64937 -39.00509 -37.21749 -34.55605 -32.61982 -32.49535 -31.67420 -30.66488 -29.28709 -27.00597 -24.82155 -23.18033 -22.94974 -22.14631 -21.33556 -20.31209 -18.97789 -17.42553 -17.05286 -16.64775 -16.35679 -15.62660 -14.89275 -14.66009 -14.52339 -14.15702 -13.77400 -13.74205 -13.55083 -13.28246 -13.15555 -12.69421 -12.60035 -12.33787 -12.05010 -11.98028 -11.78075 -11.52155 -11.16081 -11.04486 -10.98026 -10.89777 -10.83233 -10.49346 -10.26400 -10.14627 -9.85819 -9.70582 -9.50937 -8.94156 -8.52325 -7.01368 -5.80601 -3.10096 2.59785 2.82506 3.39906 3.45090 3.47156 3.73394 4.19061 4.32338 4.54183 4.54480 4.63808 4.84771 4.91515 5.04678 5.08083 5.19142 5.28966 5.31627 5.37413 5.38038 5.45218 5.50487 5.53662 5.62837 5.67839 5.69980 5.75967 5.86942 5.91323 5.97980 6.19674 6.32696 6.35389 6.47822 6.51698 6.65582 6.86097 7.00334 7.46388 7.64890 8.22582 8.37511 9.48736 10.06262 10.40893 11.41918 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032758 B = 0.003413 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.544937 B = 8203.090398 C = 8604.939675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.065 3.935 3 H 0.071 0.929 4 C -0.149 4.149 5 C -0.145 4.145 6 C 0.059 3.941 7 H 0.095 0.905 8 C 0.520 3.480 9 O -0.529 6.529 10 N -0.603 5.603 11 C 0.117 3.883 12 C -0.139 4.139 13 C 0.179 3.821 14 N -0.724 5.724 15 C -0.241 4.241 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.152 4.152 24 C 0.104 3.896 25 O -0.343 6.343 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.048 0.952 38 H 0.384 0.616 39 H 0.256 0.744 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.344 2.201 -11.722 21.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.007 3.993 3 H 0.089 0.911 4 C -0.187 4.187 5 C -0.183 4.183 6 C -0.002 4.002 7 H 0.112 0.888 8 C 0.307 3.693 9 O -0.405 6.405 10 N -0.338 5.338 11 C -0.005 4.005 12 C -0.178 4.178 13 C 0.069 3.931 14 N -0.364 5.364 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.737 3.263 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.194 4.194 24 C -0.019 4.019 25 O -0.261 6.261 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.218 0.782 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.709 1.836 -11.196 21.880 hybrid contribution 1.259 0.340 -0.371 1.356 sum -17.450 2.175 -11.567 21.048 Atomic orbital electron populations 1.21788 0.92934 1.03081 1.02476 1.23067 0.95678 0.95509 0.85008 0.91072 1.23019 0.97464 0.99824 0.98382 1.22975 0.99373 1.02225 0.93682 1.22821 0.86825 0.96595 0.93966 0.88766 1.20110 0.81823 0.84139 0.83258 1.90694 1.53750 1.58558 1.37530 1.48086 1.10376 1.34522 1.40805 1.21623 0.96823 0.87613 0.94437 1.22216 0.94641 1.01980 0.98997 1.20160 0.86492 0.93513 0.92944 1.42440 1.01528 1.80789 1.11686 1.19224 0.85003 1.38364 0.94595 0.91164 1.24759 0.97884 1.02234 0.96041 1.69661 1.27378 1.51908 1.09044 0.86206 0.83932 0.77622 0.78511 1.21739 1.21778 1.20750 1.22687 0.94975 1.01405 1.00300 1.21967 0.90801 0.97494 0.91614 1.89278 1.25093 1.74282 1.37456 0.91692 0.91093 0.91679 0.90265 0.90106 0.89289 0.90101 0.91466 0.89329 0.90447 0.91786 0.93360 0.78235 0.93460 0.92125 0.90538 0.91231 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.53 37.16 0.35 -0.79 16 2 C 0.07 0.61 3.92 -25.95 -0.10 0.50 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.15 -1.13 6.63 -25.16 -0.17 -1.30 16 5 C -0.14 -1.30 5.69 -25.16 -0.14 -1.44 16 6 C 0.06 0.72 2.74 -27.11 -0.07 0.65 16 7 H 0.09 1.02 7.42 -51.93 -0.39 0.64 16 8 C 0.52 7.97 6.99 -10.99 -0.08 7.89 16 9 O -0.53 -10.19 15.97 -13.63 -0.22 -10.41 16 10 N -0.60 -8.45 2.97 -172.80 -0.51 -8.96 16 11 C 0.12 1.70 6.43 -3.71 -0.02 1.67 16 12 C -0.14 -2.29 5.55 -26.61 -0.15 -2.44 16 13 C 0.18 3.34 2.73 -67.88 -0.19 3.16 16 14 N -0.72 -17.53 5.12 -53.38 -0.27 -17.80 16 15 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 16 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 19 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 23 C -0.15 -2.45 5.66 -26.64 -0.15 -2.60 16 24 C 0.10 1.28 5.81 -3.74 -0.02 1.26 16 25 O -0.34 -4.73 10.60 -54.42 -0.58 -5.31 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 29 H 0.08 0.58 7.86 -51.93 -0.41 0.17 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.62 7.03 -51.93 -0.37 0.25 16 32 H 0.08 0.78 7.87 -51.93 -0.41 0.37 16 33 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 34 H 0.09 1.35 7.01 -51.93 -0.36 0.98 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 38 H 0.38 10.06 7.80 -40.82 -0.32 9.74 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.08 0.75 4.60 -51.93 -0.24 0.51 16 LS Contribution 339.06 15.07 5.11 5.11 Total: -1.00 -32.88 339.06 -8.86 -41.74 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.10 Total: 6.32 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -0.98 Total: -0.49 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.06 Total: -53.82 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.79 Total: -15.72 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.88 -8.86 -41.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997024677.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.970 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds