Wall clock time and date at job start Tue Mar 31 2020 06:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 110.33133 * 2 1 4 4 C 1.54486 * 110.46779 * 237.69113 * 2 1 3 5 5 C 1.54505 * 104.06437 * 217.13976 * 4 2 1 6 6 C 1.54480 * 104.06361 * 0.02562 * 5 4 2 7 7 H 1.09000 * 110.46923 * 265.10156 * 6 5 4 8 8 C 1.50697 * 110.37643 * 142.80630 * 6 5 4 9 9 O 1.21283 * 120.00521 * 247.89458 * 8 6 5 10 10 N 1.34784 * 119.99774 * 68.16564 * 8 6 5 11 11 C 1.46927 * 120.62699 * 359.44533 * 10 8 6 12 12 C 1.52755 * 109.00696 * 233.58141 * 11 10 8 13 13 C 1.53035 * 109.38924 * 305.59167 * 12 11 10 14 14 C 1.53044 * 109.53745 * 61.23716 * 13 12 11 15 15 H 1.09005 * 109.49454 * 58.59153 * 14 13 12 16 16 N 1.46496 * 109.49837 * 178.68330 * 14 13 12 17 17 C 1.36931 * 120.00321 * 274.84216 * 16 14 13 18 18 H 1.08001 * 120.00152 * 359.97438 * 17 16 14 19 19 C 1.38819 * 120.00209 * 180.02562 * 17 16 14 20 20 N 1.31620 * 119.99485 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00062 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46703 * 59.99995 * 21 19 17 23 23 H 1.48501 * 109.47142 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47247 * 300.00025 * 21 19 17 25 25 C 1.46923 * 120.63216 * 179.72717 * 10 8 6 26 26 O 1.44427 * 110.37349 * 122.25420 * 2 1 3 27 27 H 1.08994 * 109.47379 * 299.19426 * 1 2 3 28 28 H 1.09004 * 109.47029 * 59.20170 * 1 2 3 29 29 H 1.09008 * 109.46723 * 179.19577 * 1 2 3 30 30 H 1.08996 * 110.50960 * 335.79137 * 4 2 1 31 31 H 1.09008 * 110.50700 * 98.35897 * 4 2 1 32 32 H 1.08999 * 110.51321 * 241.35950 * 5 4 2 33 33 H 1.09001 * 110.51499 * 118.64274 * 5 4 2 34 34 H 1.09000 * 109.58817 * 353.42412 * 11 10 8 35 35 H 1.09005 * 109.58520 * 113.84651 * 11 10 8 36 36 H 1.09008 * 109.56349 * 185.55747 * 12 11 10 37 37 H 1.09004 * 109.38523 * 65.52320 * 12 11 10 38 38 H 1.09005 * 109.46064 * 301.22095 * 13 12 11 39 39 H 1.08998 * 109.45584 * 181.25335 * 13 12 11 40 40 H 0.97007 * 119.99703 * 94.84328 * 16 14 13 41 41 H 0.97000 * 119.99516 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.58570 * 246.16095 * 25 10 8 43 43 H 1.09000 * 109.58284 * 6.44197 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0702 -0.7736 -1.2233 5 6 3.3208 -1.5031 -0.6838 6 6 3.3879 -1.0845 0.8017 7 1 4.0517 -0.2291 0.9271 8 6 3.8545 -2.2384 1.6513 9 8 3.0923 -2.7598 2.4376 10 7 5.1206 -2.6875 1.5414 11 6 6.0537 -2.0702 0.5891 12 6 6.6453 -3.1588 -0.3044 13 6 7.2684 -4.2500 0.5690 14 6 6.1870 -4.8803 1.4497 15 1 5.4013 -5.2965 0.8192 16 7 6.7782 -5.9460 2.2627 17 6 6.9057 -7.2087 1.7486 18 1 6.5700 -7.4192 0.7439 19 6 7.4654 -8.2187 2.5192 20 7 7.8741 -7.9622 3.7438 21 14 7.6386 -9.9414 1.8181 22 1 8.4951 -9.8986 0.6058 23 1 8.2620 -10.8285 2.8329 24 1 6.2970 -10.4665 1.4582 25 6 5.5919 -3.8076 2.3672 26 8 2.0327 -0.7226 1.1450 27 1 -0.3634 0.5012 0.8971 28 1 -0.3633 0.5262 -0.8828 29 1 -0.3633 -1.0277 -0.0144 30 1 1.3314 -1.4926 -1.5771 31 1 2.3427 -0.0833 -2.0217 32 1 4.2139 -1.1734 -1.2146 33 1 3.2003 -2.5829 -0.7708 34 1 5.5216 -1.3440 -0.0254 35 1 6.8560 -1.5726 1.1340 36 1 7.4115 -2.7263 -0.9481 37 1 5.8556 -3.5913 -0.9189 38 1 8.0415 -3.8123 1.2006 39 1 7.7104 -5.0164 -0.0676 40 1 7.0794 -5.7571 3.1652 41 1 8.2649 -8.6680 4.2824 42 1 6.3557 -3.4546 3.0601 43 1 4.7556 -4.2258 2.9273 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000253117.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:15 Heat of formation + Delta-G solvation = -70.236934 kcal Electronic energy + Delta-G solvation = -23091.859810 eV Core-core repulsion = 19751.146898 eV Total energy + Delta-G solvation = -3340.712912 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.63496 -38.97186 -37.15118 -34.57313 -32.57634 -32.42566 -31.78999 -31.14005 -28.55218 -26.92152 -25.01497 -23.74776 -22.55935 -22.07378 -21.34179 -20.22664 -18.87145 -17.43913 -17.17661 -16.60179 -16.26484 -15.42873 -15.08118 -14.51706 -14.34402 -14.27273 -13.93575 -13.85311 -13.48766 -13.16541 -12.89665 -12.78811 -12.69524 -12.47636 -12.25060 -12.00568 -11.67457 -11.24198 -11.10262 -10.98913 -10.91871 -10.89510 -10.62357 -10.42744 -10.35919 -10.13656 -10.09283 -9.71858 -9.43562 -8.91303 -8.41570 -6.99470 -5.77789 -3.07532 2.68834 2.82794 3.43888 3.48419 3.49364 3.76029 4.21114 4.33852 4.53895 4.58604 4.65150 4.83790 4.84626 4.98113 5.09447 5.12036 5.19114 5.27222 5.38093 5.45324 5.51604 5.54685 5.58155 5.69281 5.71732 5.74440 5.78612 5.79994 5.89921 6.01933 6.14994 6.22816 6.37378 6.50558 6.55917 6.72656 6.87497 7.03321 7.54074 7.68357 8.30988 8.40339 9.51232 10.06455 10.41554 11.44654 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029151 B = 0.003639 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.280794 B = 7691.587581 C = 7856.432312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.066 3.934 3 H 0.070 0.930 4 C -0.149 4.149 5 C -0.146 4.146 6 C 0.061 3.939 7 H 0.092 0.908 8 C 0.517 3.483 9 O -0.521 6.521 10 N -0.602 5.602 11 C 0.102 3.898 12 C -0.133 4.133 13 C -0.137 4.137 14 C 0.169 3.831 15 H 0.050 0.950 16 N -0.721 5.721 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.011 4.011 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.107 3.893 26 O -0.342 6.342 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.066 0.934 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.679 19.462 -11.896 24.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.008 3.992 3 H 0.088 0.912 4 C -0.187 4.187 5 C -0.184 4.184 6 C -0.001 4.001 7 H 0.109 0.891 8 C 0.303 3.697 9 O -0.396 6.396 10 N -0.338 5.338 11 C -0.021 4.021 12 C -0.172 4.172 13 C -0.178 4.178 14 C 0.058 3.942 15 H 0.068 0.932 16 N -0.362 5.362 17 C -0.371 4.371 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.580 5.580 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.015 4.015 26 O -0.260 6.260 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.218 0.782 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.227 18.946 -11.324 23.556 hybrid contribution 0.565 -0.846 -0.311 1.064 sum -7.662 18.101 -11.634 22.840 Atomic orbital electron populations 1.21792 0.92912 1.03229 1.02413 1.23063 0.95728 0.95344 0.85066 0.91198 1.23022 0.97566 0.99842 0.98289 1.23004 0.99135 1.02627 0.93584 1.22806 0.86812 0.96372 0.94069 0.89091 1.20127 0.81739 0.84330 0.83511 1.90731 1.53433 1.58169 1.37219 1.48024 1.10545 1.34759 1.40433 1.21826 0.93050 0.95802 0.91439 1.21863 1.00376 0.96924 0.98068 1.22284 0.99783 0.96998 0.98710 1.20470 0.93502 0.88181 0.92072 0.93235 1.42298 1.72790 1.05651 1.15441 1.19159 1.33896 0.86041 0.98054 0.91215 1.24752 1.01579 0.98204 0.96234 1.69653 1.46935 1.32673 1.08714 0.86258 0.77720 0.84416 0.77725 1.21270 1.21664 1.21213 1.22020 1.00073 0.86050 0.93394 1.89295 1.25016 1.74248 1.37452 0.91706 0.91114 0.91556 0.90180 0.90178 0.89329 0.89807 0.90211 0.91242 0.91247 0.91847 0.92417 0.91516 0.78164 0.93385 0.91553 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.53 37.15 0.35 -0.83 16 2 C 0.07 0.61 3.92 -25.95 -0.10 0.51 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.15 -1.17 6.63 -25.16 -0.17 -1.33 16 5 C -0.15 -1.35 5.67 -25.16 -0.14 -1.49 16 6 C 0.06 0.73 2.74 -27.11 -0.07 0.66 16 7 H 0.09 0.87 7.70 -51.93 -0.40 0.47 16 8 C 0.52 8.39 6.99 -10.98 -0.08 8.31 16 9 O -0.52 -10.97 15.97 -13.63 -0.22 -11.19 16 10 N -0.60 -8.99 2.98 -173.03 -0.52 -9.50 16 11 C 0.10 1.12 6.00 -3.93 -0.02 1.09 16 12 C -0.13 -1.60 6.06 -26.84 -0.16 -1.76 16 13 C -0.14 -2.28 5.47 -26.69 -0.15 -2.43 16 14 C 0.17 3.35 2.92 -67.81 -0.20 3.16 16 15 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 16 N -0.72 -18.03 5.12 -53.31 -0.27 -18.31 16 17 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 21 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 C 0.11 1.94 5.91 -3.71 -0.02 1.92 16 26 O -0.34 -4.77 10.61 -54.41 -0.58 -5.34 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.60 8.13 -51.92 -0.42 0.18 16 30 H 0.08 0.63 7.86 -51.93 -0.41 0.23 16 31 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 32 H 0.09 0.59 6.69 -51.93 -0.35 0.24 16 33 H 0.08 0.92 7.86 -51.93 -0.41 0.51 16 34 H 0.08 0.65 4.13 -51.93 -0.21 0.43 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.38 10.20 7.80 -40.82 -0.32 9.88 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.09 1.93 7.00 -51.93 -0.36 1.57 16 LS Contribution 338.71 15.07 5.10 5.10 Total: -1.00 -33.81 338.71 -8.86 -42.67 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -7.08 Total: 6.05 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -1.01 Total: 0.56 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.06 Total: -55.26 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.79 Total: -16.53 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.81 -8.86 -42.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000253117.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.568 kcal (2) G-P(sol) polarization free energy of solvation -33.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds