Wall clock time and date at job start Tue Mar 31 2020 06:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 110.33133 * 2 1 4 4 C 1.54486 * 110.46779 * 237.69113 * 2 1 3 5 5 C 1.54505 * 104.06437 * 217.13976 * 4 2 1 6 6 C 1.54480 * 104.06361 * 0.02562 * 5 4 2 7 7 H 1.09000 * 110.46923 * 265.10156 * 6 5 4 8 8 C 1.50697 * 110.37643 * 142.80630 * 6 5 4 9 9 O 1.21283 * 120.00521 * 247.89458 * 8 6 5 10 10 N 1.34784 * 119.99774 * 68.16564 * 8 6 5 11 11 C 1.46927 * 120.62699 * 359.44533 * 10 8 6 12 12 C 1.52755 * 109.00696 * 233.58141 * 11 10 8 13 13 C 1.53035 * 109.38924 * 305.59167 * 12 11 10 14 14 C 1.53044 * 109.53745 * 61.23716 * 13 12 11 15 15 H 1.09005 * 109.49454 * 58.59153 * 14 13 12 16 16 N 1.46496 * 109.49837 * 178.68330 * 14 13 12 17 17 C 1.36931 * 120.00321 * 274.84216 * 16 14 13 18 18 H 1.08001 * 120.00152 * 359.97438 * 17 16 14 19 19 C 1.38819 * 120.00209 * 180.02562 * 17 16 14 20 20 N 1.31620 * 119.99485 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00062 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46703 * 59.99995 * 21 19 17 23 23 H 1.48501 * 109.47142 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47247 * 300.00025 * 21 19 17 25 25 C 1.46923 * 120.63216 * 179.72717 * 10 8 6 26 26 O 1.44427 * 110.37349 * 122.25420 * 2 1 3 27 27 H 1.08994 * 109.47379 * 299.19426 * 1 2 3 28 28 H 1.09004 * 109.47029 * 59.20170 * 1 2 3 29 29 H 1.09008 * 109.46723 * 179.19577 * 1 2 3 30 30 H 1.08996 * 110.50960 * 335.79137 * 4 2 1 31 31 H 1.09008 * 110.50700 * 98.35897 * 4 2 1 32 32 H 1.08999 * 110.51321 * 241.35950 * 5 4 2 33 33 H 1.09001 * 110.51499 * 118.64274 * 5 4 2 34 34 H 1.09000 * 109.58817 * 353.42412 * 11 10 8 35 35 H 1.09005 * 109.58520 * 113.84651 * 11 10 8 36 36 H 1.09008 * 109.56349 * 185.55747 * 12 11 10 37 37 H 1.09004 * 109.38523 * 65.52320 * 12 11 10 38 38 H 1.09005 * 109.46064 * 301.22095 * 13 12 11 39 39 H 1.08998 * 109.45584 * 181.25335 * 13 12 11 40 40 H 0.97007 * 119.99703 * 94.84328 * 16 14 13 41 41 H 0.97000 * 119.99516 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.58570 * 246.16095 * 25 10 8 43 43 H 1.09000 * 109.58284 * 6.44197 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0702 -0.7736 -1.2233 5 6 3.3208 -1.5031 -0.6838 6 6 3.3879 -1.0845 0.8017 7 1 4.0517 -0.2291 0.9271 8 6 3.8545 -2.2384 1.6513 9 8 3.0923 -2.7598 2.4376 10 7 5.1206 -2.6875 1.5414 11 6 6.0537 -2.0702 0.5891 12 6 6.6453 -3.1588 -0.3044 13 6 7.2684 -4.2500 0.5690 14 6 6.1870 -4.8803 1.4497 15 1 5.4013 -5.2965 0.8192 16 7 6.7782 -5.9460 2.2627 17 6 6.9057 -7.2087 1.7486 18 1 6.5700 -7.4192 0.7439 19 6 7.4654 -8.2187 2.5192 20 7 7.8741 -7.9622 3.7438 21 14 7.6386 -9.9414 1.8181 22 1 8.4951 -9.8986 0.6058 23 1 8.2620 -10.8285 2.8329 24 1 6.2970 -10.4665 1.4582 25 6 5.5919 -3.8076 2.3672 26 8 2.0327 -0.7226 1.1450 27 1 -0.3634 0.5012 0.8971 28 1 -0.3633 0.5262 -0.8828 29 1 -0.3633 -1.0277 -0.0144 30 1 1.3314 -1.4926 -1.5771 31 1 2.3427 -0.0833 -2.0217 32 1 4.2139 -1.1734 -1.2146 33 1 3.2003 -2.5829 -0.7708 34 1 5.5216 -1.3440 -0.0254 35 1 6.8560 -1.5726 1.1340 36 1 7.4115 -2.7263 -0.9481 37 1 5.8556 -3.5913 -0.9189 38 1 8.0415 -3.8123 1.2006 39 1 7.7104 -5.0164 -0.0676 40 1 7.0794 -5.7571 3.1652 41 1 8.2649 -8.6680 4.2824 42 1 6.3557 -3.4546 3.0601 43 1 4.7556 -4.2258 2.9273 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000253117.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:15 Heat of formation + Delta-G solvation = -93.453849 kcal Electronic energy + Delta-G solvation = -23092.866571 eV Core-core repulsion = 19751.146898 eV Total energy + Delta-G solvation = -3341.719673 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.71863 -40.00290 -38.54962 -36.28428 -34.04495 -33.27018 -32.85656 -32.55995 -30.15241 -27.94417 -26.29024 -25.52878 -23.41262 -23.39774 -22.02950 -21.64660 -20.16834 -19.15631 -18.46284 -17.43539 -17.38079 -16.79062 -16.46470 -15.97672 -15.71499 -15.33608 -15.17403 -15.06623 -14.72963 -14.68710 -14.25678 -13.91904 -13.72638 -13.41880 -13.19219 -12.95794 -12.85941 -12.73007 -12.48291 -12.37298 -12.19543 -12.17643 -11.85268 -11.81133 -11.77540 -11.69709 -11.44251 -11.01552 -10.91818 -10.61130 -9.73388 -9.05096 -7.97091 -5.26968 1.44707 1.47385 1.48805 1.54559 1.69598 2.54530 2.92481 3.31981 3.36356 3.56148 3.77208 3.88541 3.92429 3.99973 4.07417 4.11393 4.17089 4.22131 4.30365 4.35032 4.45965 4.55500 4.59329 4.75391 4.77577 4.79894 4.84491 4.95788 4.97414 5.03851 5.08171 5.15949 5.19315 5.27687 5.39460 5.40967 5.49104 5.59116 5.86066 6.24334 6.36765 7.07943 7.30087 8.02874 8.27245 9.26140 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029151 B = 0.003639 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.280794 B = 7691.587581 C = 7856.432312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.056 3.944 3 H 0.095 0.905 4 C -0.143 4.143 5 C -0.143 4.143 6 C 0.064 3.936 7 H 0.128 0.872 8 C 0.507 3.493 9 O -0.585 6.585 10 N -0.598 5.598 11 C 0.097 3.903 12 C -0.124 4.124 13 C -0.128 4.128 14 C 0.168 3.832 15 H 0.030 0.970 16 N -0.736 5.736 17 C -0.242 4.242 18 H 0.074 0.926 19 C -0.074 4.074 20 N -0.969 5.969 21 Si 0.974 3.026 22 H -0.273 1.273 23 H -0.295 1.295 24 H -0.281 1.281 25 C 0.118 3.882 26 O -0.386 6.386 27 H 0.056 0.944 28 H 0.099 0.901 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.128 0.872 33 H 0.059 0.941 34 H 0.121 0.879 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.373 0.627 41 H 0.252 0.748 42 H 0.071 0.929 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.068 22.034 -15.172 27.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.000 4.000 3 H 0.113 0.887 4 C -0.180 4.180 5 C -0.180 4.180 6 C 0.004 3.996 7 H 0.145 0.855 8 C 0.296 3.704 9 O -0.465 6.465 10 N -0.331 5.331 11 C -0.024 4.024 12 C -0.162 4.162 13 C -0.168 4.168 14 C 0.059 3.941 15 H 0.048 0.952 16 N -0.376 5.376 17 C -0.374 4.374 18 H 0.092 0.908 19 C -0.266 4.266 20 N -0.619 5.619 21 Si 0.803 3.197 22 H -0.199 1.199 23 H -0.221 1.221 24 H -0.208 1.208 25 C -0.006 4.006 26 O -0.306 6.306 27 H 0.075 0.925 28 H 0.118 0.882 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.134 0.866 32 H 0.146 0.854 33 H 0.078 0.922 34 H 0.139 0.861 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.205 0.795 41 H 0.061 0.939 42 H 0.090 0.910 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.610 21.573 -14.680 27.181 hybrid contribution 0.306 -1.585 0.703 1.761 sum -7.305 19.988 -13.978 25.461 Atomic orbital electron populations 1.21843 0.92780 1.02373 1.03444 1.23401 0.96064 0.96290 0.84293 0.88716 1.23040 0.96550 1.00038 0.98416 1.23070 1.01674 1.01459 0.91840 1.22969 0.86877 0.95321 0.94467 0.85474 1.21141 0.81255 0.84961 0.83072 1.90696 1.55186 1.60471 1.40101 1.48096 1.11108 1.33493 1.40421 1.22214 0.93179 0.95944 0.91056 1.21832 1.01213 0.95531 0.97639 1.22071 0.98395 0.97985 0.98363 1.20630 0.93913 0.87585 0.91994 0.95237 1.42489 1.73246 1.06349 1.15554 1.19520 1.32536 0.87225 0.98082 0.90837 1.25579 1.02231 1.02116 0.96721 1.69815 1.48523 1.33523 1.10078 0.85206 0.77756 0.79608 0.77162 1.19921 1.22083 1.20759 1.21592 0.98576 0.86997 0.93432 1.89273 1.26098 1.75176 1.40031 0.92494 0.88196 0.93419 0.90932 0.86582 0.85420 0.92233 0.86073 0.89352 0.87319 0.91743 0.92405 0.93418 0.79513 0.93940 0.91047 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.53 71.98 0.69 -1.49 16 2 C 0.06 0.89 3.92 31.10 0.12 1.01 16 3 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 4 C -0.14 -1.69 6.63 31.61 0.21 -1.48 16 5 C -0.14 -2.12 5.67 31.61 0.18 -1.94 16 6 C 0.06 1.39 2.74 30.35 0.08 1.48 16 7 H 0.13 1.82 7.70 -2.39 -0.02 1.81 16 8 C 0.51 16.40 6.99 87.65 0.61 17.01 16 9 O -0.59 -26.06 15.97 15.30 0.24 -25.82 16 10 N -0.60 -17.28 2.98 -819.74 -2.44 -19.72 16 11 C 0.10 1.73 6.00 86.22 0.52 2.24 16 12 C -0.12 -2.50 6.06 30.52 0.19 -2.31 16 13 C -0.13 -4.11 5.47 30.62 0.17 -3.94 16 14 C 0.17 6.85 2.92 45.07 0.13 6.98 16 15 H 0.03 1.31 8.08 -2.38 -0.02 1.29 16 16 N -0.74 -38.23 5.12 -322.57 -1.65 -39.88 16 17 C -0.24 -13.73 9.93 84.04 0.83 -12.89 16 18 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 19 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 20 N -0.97 -60.35 13.06 21.65 0.28 -60.07 16 21 Si 0.97 46.83 29.55 68.60 2.03 48.86 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 23 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 24 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 25 C 0.12 4.43 5.91 86.36 0.51 4.94 16 26 O -0.39 -10.41 10.61 -130.64 -1.39 -11.79 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.10 0.85 8.14 -2.38 -0.02 0.84 16 29 H 0.05 0.86 8.13 -2.38 -0.02 0.84 16 30 H 0.07 0.98 7.86 -2.39 -0.02 0.96 16 31 H 0.12 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.13 0.87 6.69 -2.39 -0.02 0.85 16 33 H 0.06 1.19 7.86 -2.39 -0.02 1.18 16 34 H 0.12 1.22 4.13 -2.39 -0.01 1.21 16 35 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.37 20.75 7.80 -92.70 -0.72 20.03 16 41 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 42 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.05 2.49 7.00 -2.39 -0.02 2.47 16 Total: -1.00 -79.91 338.71 2.05 -77.86 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.27 Total: 24.81 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 4.71 Total: 5.75 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -3.81 Total: -119.67 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -1.14 Total: -37.61 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -79.91 2.05 -77.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000253117.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.592 kcal (2) G-P(sol) polarization free energy of solvation -79.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds