Wall clock time and date at job start Tue Mar 31 2020 07:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.45637 * 2 1 4 4 C 1.54503 * 110.63476 * 237.31526 * 2 1 3 5 5 C 1.54476 * 104.06494 * 241.30435 * 4 2 1 6 6 O 1.44422 * 104.80344 * 23.97074 * 5 4 2 7 7 C 1.44421 * 105.27840 * 319.49066 * 6 5 4 8 8 H 1.08993 * 110.47259 * 281.63434 * 7 6 5 9 9 C 1.50702 * 110.37296 * 159.33836 * 7 6 5 10 10 O 1.21283 * 119.99716 * 359.62381 * 9 7 6 11 11 N 1.34770 * 120.00210 * 179.62218 * 9 7 6 12 12 C 1.46496 * 120.00296 * 180.02562 * 11 9 7 13 13 H 1.09000 * 109.52490 * 34.91845 * 12 11 9 14 14 C 1.53047 * 109.49894 * 154.99871 * 12 11 9 15 15 C 1.53041 * 109.53823 * 181.31536 * 14 12 11 16 16 C 1.53195 * 109.31342 * 298.64042 * 15 14 12 17 17 N 1.46924 * 108.77615 * 54.63231 * 16 15 14 18 18 C 1.36937 * 120.62621 * 126.41730 * 17 16 15 19 19 H 1.07998 * 120.00348 * 332.52544 * 18 17 16 20 20 C 1.38813 * 119.99852 * 152.52882 * 18 17 16 21 21 N 1.31618 * 120.00119 * 159.35999 * 20 18 17 22 22 Si 1.86803 * 119.99920 * 339.36490 * 20 18 17 23 23 H 1.48494 * 109.47328 * 93.03910 * 22 20 18 24 24 H 1.48504 * 109.46905 * 213.04230 * 22 20 18 25 25 H 1.48497 * 109.46935 * 333.03824 * 22 20 18 26 26 C 1.46924 * 118.73909 * 306.39067 * 17 16 15 27 27 H 1.08993 * 109.47380 * 297.39520 * 1 2 3 28 28 H 1.09002 * 109.46410 * 57.39505 * 1 2 3 29 29 H 1.09004 * 109.46695 * 177.39071 * 1 2 3 30 30 H 1.09007 * 110.50613 * 359.94577 * 4 2 1 31 31 H 1.08999 * 110.51551 * 122.65023 * 4 2 1 32 32 H 1.08994 * 110.37669 * 142.80903 * 5 4 2 33 33 H 1.09007 * 110.36657 * 265.14552 * 5 4 2 34 34 H 0.97004 * 120.00202 * 359.97438 * 11 9 7 35 35 H 1.08997 * 109.45977 * 301.33414 * 14 12 11 36 36 H 1.08995 * 109.45987 * 61.29870 * 14 12 11 37 37 H 1.09009 * 109.49456 * 58.58965 * 15 14 12 38 38 H 1.08997 * 109.49951 * 178.68025 * 15 14 12 39 39 H 1.09002 * 109.57806 * 294.84299 * 16 15 14 40 40 H 1.09000 * 109.70220 * 174.49217 * 16 15 14 41 41 H 0.96996 * 119.99664 * 179.97438 * 21 20 18 42 42 H 1.09003 * 109.58524 * 293.82401 * 26 17 16 43 43 H 1.08996 * 109.58246 * 173.39712 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0745 -0.7808 -1.2170 5 6 2.8801 -1.9399 -0.5894 6 8 2.3101 -2.1158 0.7258 7 6 2.0713 -0.7796 1.2189 8 1 2.9999 -0.3325 1.5734 9 6 1.0465 -0.8034 2.3236 10 8 0.5491 -1.8550 2.6667 11 7 0.6827 0.3438 2.9302 12 6 -0.3131 0.3206 4.0044 13 1 -0.2002 -0.5942 4.5862 14 6 -0.1102 1.5336 4.9153 15 6 -1.1291 1.4928 6.0565 16 6 -2.5447 1.5565 5.4744 17 7 -2.6996 0.4784 4.4884 18 6 -3.7380 -0.4093 4.5825 19 1 -4.1750 -0.6290 5.5454 20 6 -4.2290 -1.0267 3.4404 21 7 -4.9163 -2.1447 3.5404 22 14 -3.9141 -0.2710 1.7613 23 1 -2.6854 -0.8633 1.1744 24 1 -5.0701 -0.5451 0.8704 25 1 -3.7366 1.1964 1.9044 26 6 -1.7195 0.3712 3.3991 27 1 -0.3634 0.4728 0.9123 28 1 -0.3632 0.5538 -0.8658 29 1 -0.3633 -1.0267 -0.0468 30 1 1.2536 -1.1689 -1.8200 31 1 2.7246 -0.1456 -1.8186 32 1 2.7604 -2.8484 -1.1796 33 1 3.9340 -1.6719 -0.5135 34 1 1.0808 1.1848 2.6560 35 1 0.8983 1.5131 5.3281 36 1 -0.2478 2.4481 4.3383 37 1 -1.0084 0.5669 6.6190 38 1 -0.9689 2.3442 6.7179 39 1 -2.6970 2.5205 4.9889 40 1 -3.2763 1.4297 6.2725 41 1 -5.2597 -2.5759 2.7423 42 1 -1.8045 1.2385 2.7443 43 1 -1.9049 -0.5392 2.8291 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008559697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:26 Heat of formation + Delta-G solvation = -57.407058 kcal Electronic energy + Delta-G solvation = -24060.368958 eV Core-core repulsion = 20720.212391 eV Total energy + Delta-G solvation = -3340.156566 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.54789 -38.77042 -37.30547 -34.43460 -33.52214 -32.60973 -30.71997 -30.42608 -28.96595 -26.82106 -25.27044 -23.64348 -22.56625 -21.78061 -21.10013 -20.01454 -19.31218 -17.19656 -16.97274 -16.72875 -16.02663 -15.51599 -15.07151 -14.70679 -14.62351 -14.09073 -13.82298 -13.68056 -13.37853 -13.12378 -12.86198 -12.76608 -12.56220 -12.27735 -12.18034 -11.61244 -11.57083 -11.34777 -11.09185 -11.03123 -10.94145 -10.71944 -10.60350 -10.22425 -10.15885 -9.96259 -9.73261 -9.47627 -9.31307 -8.82854 -8.46344 -6.93643 -5.89366 -3.25864 2.86123 3.04054 3.40499 3.49665 3.53329 3.97778 4.28800 4.53710 4.58873 4.61978 4.87728 4.93457 5.05496 5.11550 5.20410 5.24681 5.27927 5.39871 5.48969 5.50743 5.51511 5.55174 5.77383 5.82595 5.85583 5.94382 5.96601 6.04035 6.21275 6.26428 6.32547 6.44890 6.56155 6.57913 6.65105 6.69079 6.81827 6.95900 7.73791 8.00817 8.38382 8.51086 8.98149 9.77343 10.12928 11.26422 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017526 B = 0.006631 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.279230 B = 4221.500632 C = 5088.720255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.113 4.113 3 H 0.090 0.910 4 C -0.151 4.151 5 C 0.041 3.959 6 O -0.342 6.342 7 C 0.059 3.941 8 H 0.091 0.909 9 C 0.517 3.483 10 O -0.506 6.506 11 N -0.726 5.726 12 C 0.126 3.874 13 H 0.092 0.908 14 C -0.116 4.116 15 C -0.133 4.133 16 C 0.145 3.855 17 N -0.601 5.601 18 C -0.265 4.265 19 H 0.087 0.913 20 C 0.028 3.972 21 N -0.904 5.904 22 Si 0.878 3.122 23 H -0.282 1.282 24 H -0.304 1.304 25 H -0.272 1.272 26 C 0.121 3.879 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.393 0.607 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.022 0.978 40 H 0.065 0.935 41 H 0.262 0.738 42 H 0.023 0.977 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.255 9.542 -6.754 20.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.132 4.132 3 H 0.109 0.891 4 C -0.188 4.188 5 C -0.036 4.036 6 O -0.259 6.259 7 C -0.003 4.003 8 H 0.109 0.891 9 C 0.301 3.699 10 O -0.379 6.379 11 N -0.379 5.379 12 C 0.021 3.979 13 H 0.110 0.890 14 C -0.154 4.154 15 C -0.172 4.172 16 C 0.019 3.981 17 N -0.325 5.325 18 C -0.393 4.393 19 H 0.104 0.896 20 C -0.171 4.171 21 N -0.546 5.546 22 Si 0.708 3.292 23 H -0.209 1.209 24 H -0.233 1.233 25 H -0.198 1.198 26 C -0.006 4.006 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.227 0.773 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.040 0.960 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.041 0.959 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 16.702 8.386 -6.447 19.770 hybrid contribution 0.428 0.940 -1.369 1.715 sum 17.130 9.327 -7.816 21.012 Atomic orbital electron populations 1.22123 0.93135 1.03586 1.03064 1.22487 0.97808 0.99565 0.93348 0.89128 1.23056 1.00645 0.97325 0.97813 1.23478 0.96587 0.99284 0.84218 1.89304 1.82733 1.23349 1.30547 1.22985 0.97552 0.85547 0.94168 0.89101 1.20018 0.82810 0.84447 0.82629 1.90804 1.53739 1.30364 1.62952 1.46085 1.44241 1.08789 1.38822 1.21774 0.88625 0.99760 0.87731 0.89036 1.21680 0.99094 0.97334 0.97282 1.22005 0.96823 1.01556 0.96851 1.20983 0.94021 0.90528 0.92532 1.44283 1.27119 1.31804 1.29282 1.18886 1.09022 1.16876 0.94490 0.89589 1.25264 0.97370 0.96834 0.97674 1.69833 1.39549 1.16149 1.29062 0.86994 0.76275 0.80163 0.85755 1.20924 1.23257 1.19755 1.21694 0.87364 1.00109 0.91416 0.91111 0.91970 0.91563 0.90088 0.90231 0.88695 0.92119 0.77326 0.92428 0.92118 0.91617 0.92142 0.95962 0.91642 0.92766 0.95918 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 8.11 37.16 0.30 -2.04 16 2 C -0.11 -1.25 3.61 -89.05 -0.32 -1.57 16 3 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.15 -1.41 6.74 -25.17 -0.17 -1.58 16 5 C 0.04 0.43 7.63 37.93 0.29 0.72 16 6 O -0.34 -5.33 10.91 -54.45 -0.59 -5.92 16 7 C 0.06 0.79 3.63 -27.10 -0.10 0.69 16 8 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 9 C 0.52 9.08 5.50 -10.99 -0.06 9.02 16 10 O -0.51 -11.89 16.21 -13.66 -0.22 -12.11 16 11 N -0.73 -11.00 3.83 -53.69 -0.21 -11.20 16 12 C 0.13 2.32 2.60 -67.81 -0.18 2.14 16 13 H 0.09 1.98 7.58 -51.93 -0.39 1.58 16 14 C -0.12 -1.68 5.35 -26.69 -0.14 -1.82 16 15 C -0.13 -2.08 6.08 -26.61 -0.16 -2.24 16 16 C 0.15 2.81 6.52 -3.71 -0.02 2.79 16 17 N -0.60 -14.62 2.77 -172.32 -0.48 -15.10 16 18 C -0.26 -7.67 10.03 -15.06 -0.15 -7.82 16 19 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 20 C 0.03 0.85 5.23 -17.43 -0.09 0.76 16 21 N -0.90 -28.97 13.97 55.49 0.78 -28.20 16 22 Si 0.88 23.36 24.35 -169.99 -4.14 19.22 16 23 H -0.28 -7.43 6.63 56.52 0.37 -7.05 16 24 H -0.30 -8.19 7.11 56.52 0.40 -7.79 16 25 H -0.27 -6.98 6.63 56.52 0.37 -6.60 16 26 C 0.12 2.73 3.49 -3.71 -0.01 2.72 16 27 H 0.07 1.14 5.81 -51.93 -0.30 0.83 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.08 0.80 7.74 -51.93 -0.40 0.40 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 34 H 0.39 4.32 8.60 -40.82 -0.35 3.97 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 41 H 0.26 8.03 8.31 -40.82 -0.34 7.69 16 42 H 0.02 0.50 7.07 -51.93 -0.37 0.13 16 43 H 0.08 2.11 4.51 -51.93 -0.23 1.87 16 LS Contribution 330.24 15.07 4.98 4.98 Total: -1.00 -36.42 330.24 -7.85 -44.27 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.15 Total: 2.31 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -0.82 Total: 1.76 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: 0.09 Total: -54.50 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.82 Total: -18.03 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -4.14 Total: 19.22 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -36.42 -7.85 -44.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008559697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.137 kcal (2) G-P(sol) polarization free energy of solvation -36.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds