Wall clock time and date at job start Tue Mar 31 2020 07:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.45637 * 2 1 4 4 C 1.54503 * 110.63476 * 237.31526 * 2 1 3 5 5 C 1.54476 * 104.06494 * 241.30435 * 4 2 1 6 6 O 1.44422 * 104.80344 * 23.97074 * 5 4 2 7 7 C 1.44421 * 105.27840 * 319.49066 * 6 5 4 8 8 H 1.08993 * 110.47259 * 281.63434 * 7 6 5 9 9 C 1.50702 * 110.37296 * 159.33836 * 7 6 5 10 10 O 1.21283 * 119.99716 * 359.62381 * 9 7 6 11 11 N 1.34770 * 120.00210 * 179.62218 * 9 7 6 12 12 C 1.46496 * 120.00296 * 180.02562 * 11 9 7 13 13 H 1.09000 * 109.52490 * 34.91845 * 12 11 9 14 14 C 1.53047 * 109.49894 * 154.99871 * 12 11 9 15 15 C 1.53041 * 109.53823 * 181.31536 * 14 12 11 16 16 C 1.53195 * 109.31342 * 298.64042 * 15 14 12 17 17 N 1.46924 * 108.77615 * 54.63231 * 16 15 14 18 18 C 1.36937 * 120.62621 * 126.41730 * 17 16 15 19 19 H 1.07998 * 120.00348 * 332.52544 * 18 17 16 20 20 C 1.38813 * 119.99852 * 152.52882 * 18 17 16 21 21 N 1.31618 * 120.00119 * 159.35999 * 20 18 17 22 22 Si 1.86803 * 119.99920 * 339.36490 * 20 18 17 23 23 H 1.48494 * 109.47328 * 93.03910 * 22 20 18 24 24 H 1.48504 * 109.46905 * 213.04230 * 22 20 18 25 25 H 1.48497 * 109.46935 * 333.03824 * 22 20 18 26 26 C 1.46924 * 118.73909 * 306.39067 * 17 16 15 27 27 H 1.08993 * 109.47380 * 297.39520 * 1 2 3 28 28 H 1.09002 * 109.46410 * 57.39505 * 1 2 3 29 29 H 1.09004 * 109.46695 * 177.39071 * 1 2 3 30 30 H 1.09007 * 110.50613 * 359.94577 * 4 2 1 31 31 H 1.08999 * 110.51551 * 122.65023 * 4 2 1 32 32 H 1.08994 * 110.37669 * 142.80903 * 5 4 2 33 33 H 1.09007 * 110.36657 * 265.14552 * 5 4 2 34 34 H 0.97004 * 120.00202 * 359.97438 * 11 9 7 35 35 H 1.08997 * 109.45977 * 301.33414 * 14 12 11 36 36 H 1.08995 * 109.45987 * 61.29870 * 14 12 11 37 37 H 1.09009 * 109.49456 * 58.58965 * 15 14 12 38 38 H 1.08997 * 109.49951 * 178.68025 * 15 14 12 39 39 H 1.09002 * 109.57806 * 294.84299 * 16 15 14 40 40 H 1.09000 * 109.70220 * 174.49217 * 16 15 14 41 41 H 0.96996 * 119.99664 * 179.97438 * 21 20 18 42 42 H 1.09003 * 109.58524 * 293.82401 * 26 17 16 43 43 H 1.08996 * 109.58246 * 173.39712 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0745 -0.7808 -1.2170 5 6 2.8801 -1.9399 -0.5894 6 8 2.3101 -2.1158 0.7258 7 6 2.0713 -0.7796 1.2189 8 1 2.9999 -0.3325 1.5734 9 6 1.0465 -0.8034 2.3236 10 8 0.5491 -1.8550 2.6667 11 7 0.6827 0.3438 2.9302 12 6 -0.3131 0.3206 4.0044 13 1 -0.2002 -0.5942 4.5862 14 6 -0.1102 1.5336 4.9153 15 6 -1.1291 1.4928 6.0565 16 6 -2.5447 1.5565 5.4744 17 7 -2.6996 0.4784 4.4884 18 6 -3.7380 -0.4093 4.5825 19 1 -4.1750 -0.6290 5.5454 20 6 -4.2290 -1.0267 3.4404 21 7 -4.9163 -2.1447 3.5404 22 14 -3.9141 -0.2710 1.7613 23 1 -2.6854 -0.8633 1.1744 24 1 -5.0701 -0.5451 0.8704 25 1 -3.7366 1.1964 1.9044 26 6 -1.7195 0.3712 3.3991 27 1 -0.3634 0.4728 0.9123 28 1 -0.3632 0.5538 -0.8658 29 1 -0.3633 -1.0267 -0.0468 30 1 1.2536 -1.1689 -1.8200 31 1 2.7246 -0.1456 -1.8186 32 1 2.7604 -2.8484 -1.1796 33 1 3.9340 -1.6719 -0.5135 34 1 1.0808 1.1848 2.6560 35 1 0.8983 1.5131 5.3281 36 1 -0.2478 2.4481 4.3383 37 1 -1.0084 0.5669 6.6190 38 1 -0.9689 2.3442 6.7179 39 1 -2.6970 2.5205 4.9889 40 1 -3.2763 1.4297 6.2725 41 1 -5.2597 -2.5759 2.7423 42 1 -1.8045 1.2385 2.7443 43 1 -1.9049 -0.5392 2.8291 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008559697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:25 Heat of formation + Delta-G solvation = -85.451470 kcal Electronic energy + Delta-G solvation = -24061.585055 eV Core-core repulsion = 20720.212391 eV Total energy + Delta-G solvation = -3341.372663 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.72668 -40.04350 -38.83255 -36.01368 -34.82496 -34.20778 -32.61195 -31.57593 -30.23093 -27.94315 -27.22691 -24.88540 -24.04683 -23.14476 -22.22681 -21.42276 -20.66502 -18.89946 -18.39471 -17.85368 -17.48977 -17.09250 -16.29964 -16.06354 -15.93731 -15.63142 -15.44532 -15.01405 -14.71160 -14.50553 -14.43872 -14.17394 -13.92364 -13.77688 -13.63419 -13.41448 -12.67179 -12.54962 -12.52540 -12.38428 -12.32960 -11.97988 -11.79846 -11.75008 -11.71610 -11.64771 -11.36533 -10.97399 -10.81210 -10.63445 -10.16559 -8.95472 -8.24151 -5.54733 1.23203 1.27409 1.37905 1.53826 1.86269 2.35810 2.95626 3.06890 3.33296 3.41059 3.61493 3.74042 3.81181 4.01581 4.05104 4.14541 4.19465 4.22701 4.33148 4.38278 4.40867 4.58267 4.61189 4.67527 4.79269 4.79946 4.86059 4.88672 4.98025 5.01096 5.08009 5.10448 5.15207 5.21061 5.22987 5.39919 5.54666 5.75435 5.82359 6.06285 6.55217 6.86509 7.26340 7.57584 7.96178 8.95628 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017526 B = 0.006631 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.279230 B = 4221.500632 C = 5088.720255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.105 4.105 3 H 0.141 0.859 4 C -0.145 4.145 5 C 0.033 3.967 6 O -0.392 6.392 7 C 0.061 3.939 8 H 0.137 0.863 9 C 0.509 3.491 10 O -0.581 6.581 11 N -0.704 5.704 12 C 0.135 3.865 13 H 0.048 0.952 14 C -0.105 4.105 15 C -0.126 4.126 16 C 0.136 3.864 17 N -0.619 5.619 18 C -0.249 4.249 19 H 0.054 0.946 20 C -0.039 4.039 21 N -0.956 5.956 22 Si 0.946 3.054 23 H -0.290 1.290 24 H -0.310 1.310 25 H -0.248 1.248 26 C 0.122 3.878 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.017 0.983 30 H 0.066 0.934 31 H 0.120 0.880 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.420 0.580 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.044 0.956 38 H 0.105 0.895 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.259 0.741 42 H 0.041 0.959 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.957 13.997 -8.048 26.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.124 4.124 3 H 0.159 0.841 4 C -0.182 4.182 5 C -0.042 4.042 6 O -0.311 6.311 7 C 0.000 4.000 8 H 0.154 0.846 9 C 0.296 3.704 10 O -0.459 6.459 11 N -0.359 5.359 12 C 0.029 3.971 13 H 0.066 0.934 14 C -0.143 4.143 15 C -0.165 4.165 16 C 0.012 3.988 17 N -0.344 5.344 18 C -0.379 4.379 19 H 0.072 0.928 20 C -0.233 4.233 21 N -0.602 5.602 22 Si 0.776 3.224 23 H -0.218 1.218 24 H -0.239 1.239 25 H -0.171 1.171 26 C -0.004 4.004 27 H 0.071 0.929 28 H 0.102 0.898 29 H 0.036 0.964 30 H 0.085 0.915 31 H 0.139 0.861 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.259 0.741 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.062 0.938 38 H 0.124 0.876 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 20.467 12.955 -7.742 25.430 hybrid contribution -0.713 -0.479 -0.867 1.221 sum 19.754 12.477 -8.610 24.900 Atomic orbital electron populations 1.22123 0.96341 1.00547 1.03075 1.22593 0.94889 1.02076 0.92808 0.84135 1.23077 1.00704 0.97212 0.97228 1.23773 0.98213 1.00060 0.82205 1.89272 1.83570 1.25153 1.33088 1.23221 0.97791 0.85588 0.93411 0.84572 1.21030 0.82766 0.83686 0.82916 1.90774 1.56622 1.33209 1.65340 1.45811 1.42903 1.09644 1.37535 1.21376 0.87041 1.00259 0.88456 0.93386 1.21672 1.00488 0.95964 0.96145 1.21933 0.94443 1.02490 0.97621 1.21277 0.96534 0.89639 0.91343 1.44451 1.26482 1.32668 1.30765 1.18891 1.09295 1.16653 0.93056 0.92800 1.25960 0.98356 0.97418 1.01599 1.69978 1.42478 1.18048 1.29731 0.85895 0.75212 0.80350 0.80973 1.21752 1.23929 1.17129 1.21627 0.89544 0.98263 0.90970 0.92908 0.89834 0.96400 0.91499 0.86134 0.88801 0.88939 0.74145 0.89001 0.89067 0.93754 0.87624 0.93491 0.92634 0.93218 0.94170 0.95084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.51 8.11 71.98 0.58 -3.93 16 2 C -0.11 -1.90 3.61 -9.78 -0.04 -1.94 16 3 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 4 C -0.14 -2.17 6.74 31.61 0.21 -1.95 16 5 C 0.03 0.61 7.63 72.48 0.55 1.16 16 6 O -0.39 -11.96 10.91 -130.60 -1.42 -13.39 16 7 C 0.06 1.46 3.63 30.35 0.11 1.57 16 8 H 0.14 2.05 8.14 -2.39 -0.02 2.04 16 9 C 0.51 17.70 5.50 87.66 0.48 18.19 16 10 O -0.58 -28.95 16.21 15.34 0.25 -28.70 16 11 N -0.70 -19.76 3.83 -442.17 -1.69 -21.46 16 12 C 0.14 4.81 2.60 45.07 0.12 4.93 16 13 H 0.05 2.14 7.58 -2.39 -0.02 2.13 16 14 C -0.10 -2.57 5.35 30.62 0.16 -2.41 16 15 C -0.13 -3.52 6.08 30.67 0.19 -3.33 16 16 C 0.14 5.02 6.52 86.36 0.56 5.58 16 17 N -0.62 -30.29 2.77 -699.10 -1.94 -32.23 16 18 C -0.25 -15.10 10.03 84.03 0.84 -14.25 16 19 H 0.05 3.52 8.06 -2.91 -0.02 3.50 16 20 C -0.04 -2.46 5.23 84.86 0.44 -2.01 16 21 N -0.96 -65.15 13.97 21.65 0.30 -64.85 16 22 Si 0.95 50.81 24.35 68.60 1.67 52.48 16 23 H -0.29 -15.77 6.63 99.48 0.66 -15.11 16 24 H -0.31 -16.73 7.11 99.48 0.71 -16.03 16 25 H -0.25 -12.07 6.63 99.48 0.66 -11.41 16 26 C 0.12 5.50 3.49 86.36 0.30 5.80 16 27 H 0.05 1.61 5.81 -2.39 -0.01 1.60 16 28 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 1.20 7.74 -2.38 -0.02 1.18 16 31 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.42 7.20 8.60 -92.71 -0.80 6.41 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.06 2.12 7.93 -2.39 -0.02 2.10 16 41 H 0.26 16.88 8.31 -92.71 -0.77 16.11 16 42 H 0.04 1.67 7.07 -2.39 -0.02 1.65 16 43 H 0.03 1.71 4.51 -2.39 -0.01 1.69 16 Total: -1.00 -90.97 330.24 1.80 -89.17 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.10 Total: 11.58 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 4.53 Total: 7.40 kcal Atomic # 7 Polarization: -115.21 SS G_CDS: -3.33 Total: -118.54 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -1.18 Total: -42.09 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 1.67 Total: 52.48 kcal Total: -90.97 1.80 -89.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008559697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.718 kcal (2) G-P(sol) polarization free energy of solvation -90.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds