Wall clock time and date at job start Tue Mar 31 2020 06:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.42056 * 2 1 4 4 C 1.54478 * 110.37259 * 237.68773 * 2 1 3 5 5 C 1.54517 * 104.06062 * 217.18892 * 4 2 1 6 6 C 1.54480 * 104.06169 * 0.02562 * 5 4 2 7 7 H 1.09001 * 110.46039 * 265.09391 * 6 5 4 8 8 C 1.50704 * 110.36927 * 142.81225 * 6 5 4 9 9 O 1.21281 * 119.99546 * 248.16353 * 8 6 5 10 10 N 1.34776 * 120.00204 * 68.43476 * 8 6 5 11 11 C 1.46502 * 119.99982 * 179.72350 * 10 8 6 12 12 H 1.09004 * 109.49715 * 34.93851 * 11 10 8 13 13 C 1.53037 * 109.49700 * 154.99830 * 11 10 8 14 14 C 1.53048 * 109.53761 * 181.31704 * 13 11 10 15 15 C 1.53196 * 109.30971 * 298.63839 * 14 13 11 16 16 N 1.46921 * 108.77749 * 54.63635 * 15 14 13 17 17 C 1.36937 * 120.63260 * 126.40642 * 16 15 14 18 18 H 1.07998 * 120.00354 * 207.67093 * 17 16 15 19 19 C 1.38812 * 119.99697 * 27.68016 * 17 16 15 20 20 N 1.31618 * 120.00375 * 17.34965 * 19 17 16 21 21 Si 1.86806 * 119.99805 * 197.35305 * 19 17 16 22 22 H 1.48501 * 109.47084 * 59.99900 * 21 19 17 23 23 H 1.48500 * 109.47082 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47114 * 299.99745 * 21 19 17 25 25 C 1.46927 * 118.73993 * 306.39155 * 16 15 14 26 26 O 1.44420 * 104.80405 * 23.97585 * 6 5 4 27 27 H 1.09002 * 109.47229 * 299.14480 * 1 2 3 28 28 H 1.08994 * 109.47140 * 59.14624 * 1 2 3 29 29 H 1.09005 * 109.47214 * 179.14845 * 1 2 3 30 30 H 1.08993 * 110.51343 * 335.83390 * 4 2 1 31 31 H 1.08997 * 110.51252 * 98.54915 * 4 2 1 32 32 H 1.08999 * 110.51050 * 241.35105 * 5 4 2 33 33 H 1.09006 * 110.50603 * 118.64528 * 5 4 2 34 34 H 0.97001 * 120.00116 * 359.72651 * 10 8 6 35 35 H 1.08996 * 109.46348 * 301.34311 * 13 11 10 36 36 H 1.09001 * 109.45876 * 61.30164 * 13 11 10 37 37 H 1.08995 * 109.49297 * 58.58630 * 14 13 11 38 38 H 1.08995 * 109.49665 * 178.65806 * 14 13 11 39 39 H 1.09006 * 109.58303 * 174.42187 * 15 14 13 40 40 H 1.08999 * 109.58982 * 294.84393 * 15 14 13 41 41 H 0.96998 * 120.00152 * 179.97438 * 20 19 17 42 42 H 1.09007 * 109.58007 * 293.81867 * 25 16 15 43 43 H 1.09003 * 109.58887 * 173.39842 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0677 -0.7741 -1.2239 5 6 3.3178 -1.5057 -0.6857 6 6 3.3869 -1.0875 0.7998 7 1 4.0523 -0.2333 0.9246 8 6 3.8527 -2.2424 1.6487 9 8 3.0889 -2.7659 2.4319 10 7 5.1194 -2.6898 1.5414 11 6 5.5739 -3.8085 2.3710 12 1 4.7543 -4.5132 2.5121 13 6 6.7420 -4.5155 1.6798 14 6 7.1962 -5.7043 2.5300 15 6 7.6761 -5.1978 3.8938 16 7 6.6076 -4.3939 4.5025 17 6 6.1537 -4.6765 5.7632 18 1 5.1398 -4.4287 6.0403 19 6 6.9971 -5.2814 6.6850 20 7 8.2985 -5.2767 6.4885 21 14 6.2849 -6.1022 8.2044 22 1 5.3633 -7.1914 7.7926 23 1 7.3865 -6.6695 9.0228 24 1 5.5388 -5.0987 9.0053 25 6 6.0353 -3.2807 3.7330 26 8 2.0323 -0.7244 1.1443 27 1 -0.3634 0.5005 0.8976 28 1 -0.3633 0.5270 -0.8822 29 1 -0.3634 -1.0276 -0.0153 30 1 1.3276 -1.4920 -1.5771 31 1 2.3429 -0.0840 -2.0215 32 1 4.2109 -1.1773 -1.2174 33 1 3.1955 -2.5853 -0.7730 34 1 5.7303 -2.2711 0.9149 35 1 6.4231 -4.8705 0.6999 36 1 7.5701 -3.8168 1.5608 37 1 6.3616 -6.3911 2.6701 38 1 8.0124 -6.2214 2.0256 39 1 7.9072 -6.0462 4.5380 40 1 8.5665 -4.5828 3.7626 41 1 8.8878 -5.6990 7.1329 42 1 6.7919 -2.5093 3.5887 43 1 5.1838 -2.8641 4.2711 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008597553.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:32 Heat of formation + Delta-G solvation = -68.518905 kcal Electronic energy + Delta-G solvation = -22908.290996 eV Core-core repulsion = 19567.652584 eV Total energy + Delta-G solvation = -3340.638412 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.34773 -38.79287 -37.14566 -34.30188 -32.62863 -32.45877 -31.72845 -30.43755 -28.84963 -26.56069 -25.25673 -23.08446 -22.10610 -21.77954 -21.33126 -20.11104 -19.30332 -17.22554 -16.79633 -16.68855 -16.17466 -15.34705 -14.86453 -14.46872 -14.45534 -14.07439 -13.85205 -13.56691 -13.37547 -13.03564 -12.68728 -12.57329 -12.38157 -12.35399 -12.00692 -11.80634 -11.70616 -11.17269 -11.07242 -11.01456 -10.85226 -10.74967 -10.24962 -10.22732 -10.09891 -9.87748 -9.84304 -9.61403 -9.32828 -8.80202 -8.36794 -6.64516 -5.75253 -3.17106 2.77779 3.03761 3.44469 3.48425 3.52052 3.87859 4.26714 4.43899 4.55857 4.60925 4.75808 4.87445 5.05868 5.13096 5.21509 5.31510 5.39241 5.40836 5.46651 5.55490 5.58722 5.64362 5.70397 5.73176 5.78998 5.91359 6.09607 6.17023 6.25067 6.53258 6.59082 6.63378 6.68962 6.72609 6.86430 7.02460 7.37903 7.66589 7.75220 7.86691 8.45087 8.51323 9.25635 9.87836 10.43337 11.33550 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026828 B = 0.003781 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.434668 B = 7404.326193 C = 8170.453641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.065 3.935 3 H 0.071 0.929 4 C -0.149 4.149 5 C -0.144 4.144 6 C 0.058 3.942 7 H 0.093 0.907 8 C 0.514 3.486 9 O -0.515 6.515 10 N -0.720 5.720 11 C 0.127 3.873 12 H 0.086 0.914 13 C -0.114 4.114 14 C -0.140 4.140 15 C 0.167 3.833 16 N -0.588 5.588 17 C -0.251 4.251 18 H 0.067 0.933 19 C 0.002 3.998 20 N -0.905 5.905 21 Si 0.904 3.096 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.142 3.858 26 O -0.340 6.340 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.394 0.606 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.019 0.981 41 H 0.254 0.746 42 H 0.017 0.983 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.317 9.186 -18.905 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.007 3.993 3 H 0.088 0.912 4 C -0.187 4.187 5 C -0.182 4.182 6 C -0.004 4.004 7 H 0.110 0.890 8 C 0.298 3.702 9 O -0.389 6.389 10 N -0.373 5.373 11 C 0.022 3.978 12 H 0.104 0.896 13 C -0.152 4.152 14 C -0.180 4.180 15 C 0.041 3.959 16 N -0.310 5.310 17 C -0.381 4.381 18 H 0.084 0.916 19 C -0.196 4.196 20 N -0.550 5.550 21 Si 0.733 3.267 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.208 1.208 25 C 0.014 3.986 26 O -0.258 6.258 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.227 0.773 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.037 0.963 41 H 0.064 0.936 42 H 0.035 0.965 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.883 8.676 -17.975 21.460 hybrid contribution 0.214 -0.085 0.255 0.344 sum -7.670 8.591 -17.720 21.133 Atomic orbital electron populations 1.21790 0.92945 1.03166 1.02441 1.23066 0.95724 0.95404 0.85075 0.91153 1.23014 0.97524 0.99796 0.98352 1.22904 0.99225 1.02269 0.93815 1.22855 0.87051 0.96573 0.93875 0.88982 1.20099 0.82382 0.84294 0.83458 1.90762 1.54004 1.57489 1.36611 1.46043 1.11715 1.36530 1.42979 1.21756 0.96904 0.87340 0.91820 0.89612 1.21673 0.97128 0.98445 0.97950 1.22186 1.00339 0.96483 0.98955 1.20845 0.89119 0.96096 0.89792 1.43995 1.42198 1.30950 1.13902 1.19203 0.94933 1.36200 0.87732 0.91567 1.25013 0.94929 1.02088 0.97557 1.70029 1.01439 1.46578 1.36913 0.86344 0.77931 0.79789 0.82612 1.20959 1.21650 1.20818 1.21191 0.96584 0.90525 0.90287 1.89322 1.25016 1.74100 1.37398 0.91647 0.91167 0.91609 0.90269 0.90260 0.89632 0.90071 0.77288 0.93118 0.92224 0.92421 0.92707 0.89242 0.96311 0.93627 0.96472 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.52 37.15 0.35 -0.87 16 2 C 0.07 0.62 3.92 -25.96 -0.10 0.52 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.15 -1.14 6.63 -25.16 -0.17 -1.31 16 5 C -0.14 -1.25 6.62 -25.16 -0.17 -1.42 16 6 C 0.06 0.70 3.71 -27.10 -0.10 0.60 16 7 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 8 C 0.51 8.32 7.04 -10.98 -0.08 8.24 16 9 O -0.51 -11.15 16.22 -13.63 -0.22 -11.37 16 10 N -0.72 -10.38 5.08 -53.69 -0.27 -10.65 16 11 C 0.13 2.31 2.60 -67.81 -0.18 2.14 16 12 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 13 C -0.11 -1.82 5.35 -26.69 -0.14 -1.97 16 14 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 15 C 0.17 3.99 5.31 -3.71 -0.02 3.97 16 16 N -0.59 -15.24 2.99 -172.32 -0.52 -15.76 16 17 C -0.25 -7.22 9.59 -15.06 -0.14 -7.36 16 18 H 0.07 1.92 7.89 -52.49 -0.41 1.51 16 19 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 20 N -0.90 -26.61 11.19 55.49 0.62 -25.99 16 21 Si 0.90 22.43 29.59 -169.99 -5.03 17.40 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 C 0.14 3.17 6.09 -3.71 -0.02 3.15 16 26 O -0.34 -4.87 10.61 -54.42 -0.58 -5.45 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 30 H 0.08 0.60 7.86 -51.93 -0.41 0.19 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.79 7.86 -51.93 -0.41 0.38 16 34 H 0.39 4.17 8.60 -40.82 -0.35 3.82 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.09 2.39 6.04 -51.93 -0.31 2.08 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 43 H 0.06 1.41 7.93 -51.93 -0.41 1.00 16 LS Contribution 342.27 15.07 5.16 5.16 Total: -1.00 -34.27 342.27 -9.18 -43.45 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -7.33 Total: 0.32 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -1.01 Total: 2.89 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.17 Total: -52.40 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.80 Total: -16.81 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.40 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.27 -9.18 -43.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008597553.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.068 kcal (2) G-P(sol) polarization free energy of solvation -34.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds