Wall clock time and date at job start Tue Mar 31 2020 07:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.57751 * 2 1 4 4 C 1.53096 * 109.52331 * 120.16187 * 2 1 3 5 5 O 1.42897 * 109.41687 * 177.51240 * 4 2 1 6 6 C 1.42901 * 114.09656 * 298.83808 * 5 4 2 7 7 C 1.53088 * 109.41579 * 61.16124 * 6 5 4 8 8 C 1.53176 * 109.16070 * 302.38909 * 7 6 5 9 9 H 1.08993 * 109.54292 * 297.02333 * 8 7 6 10 10 C 1.50705 * 109.54210 * 176.84825 * 8 7 6 11 11 O 1.21286 * 119.99804 * 239.99919 * 10 8 7 12 12 N 1.34774 * 120.00141 * 60.00492 * 10 8 7 13 13 C 1.46499 * 119.99884 * 180.02562 * 12 10 8 14 14 H 1.08998 * 112.85087 * 336.18504 * 13 12 10 15 15 C 1.53777 * 113.61486 * 107.49951 * 13 12 10 16 16 C 1.53785 * 87.08241 * 139.97730 * 15 13 12 17 17 H 1.09002 * 113.61570 * 220.01842 * 16 15 13 18 18 N 1.46500 * 113.68813 * 89.12417 * 16 15 13 19 19 C 1.36936 * 119.99618 * 105.94148 * 18 16 15 20 20 H 1.07990 * 120.00427 * 359.97438 * 19 18 16 21 21 C 1.38824 * 119.99622 * 179.97438 * 19 18 16 22 22 N 1.31617 * 120.00063 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99662 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47100 * 90.00073 * 23 21 19 25 25 H 1.48504 * 109.47148 * 209.99685 * 23 21 19 26 26 H 1.48493 * 109.47533 * 329.99863 * 23 21 19 27 27 C 1.53781 * 87.08241 * 334.56547 * 16 15 13 28 28 H 1.08997 * 109.47798 * 180.15789 * 1 2 3 29 29 H 1.08998 * 109.47221 * 300.15569 * 1 2 3 30 30 H 1.08998 * 109.47185 * 60.15442 * 1 2 3 31 31 H 1.08997 * 109.48349 * 57.52544 * 4 2 1 32 32 H 1.09004 * 109.47903 * 297.49296 * 4 2 1 33 33 H 1.08995 * 109.48544 * 301.17307 * 6 5 4 34 34 H 1.09008 * 109.47724 * 181.14041 * 6 5 4 35 35 H 1.08999 * 109.52532 * 182.48338 * 7 6 5 36 36 H 1.09000 * 109.52350 * 62.29419 * 7 6 5 37 37 H 0.97004 * 120.00019 * 359.97438 * 12 10 8 38 38 H 1.08999 * 113.61947 * 25.43156 * 15 13 12 39 39 H 1.08997 * 113.61348 * 254.52371 * 15 13 12 40 40 H 0.96998 * 120.00149 * 285.93056 * 18 16 15 41 41 H 0.96996 * 120.00147 * 180.02562 * 22 21 19 42 42 H 1.09000 * 113.61578 * 139.97748 * 27 16 15 43 43 H 1.09001 * 113.61682 * 270.80327 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7250 1.2476 5 8 3.4693 -0.7745 1.2163 6 6 4.0042 -1.4818 0.0957 7 6 3.5715 -0.7873 -1.1982 8 6 2.0418 -0.7254 -1.2483 9 1 1.6367 -1.7368 -1.2758 10 6 1.6078 0.0252 -2.4810 11 8 0.9465 1.0362 -2.3739 12 7 1.9544 -0.4271 -3.7023 13 6 1.5329 0.3028 -4.9005 14 1 0.6456 0.9135 -4.7339 15 6 2.6784 1.0546 -5.5986 16 6 2.0550 0.6070 -6.9313 17 1 2.7901 0.3095 -7.6791 18 7 1.0550 1.5401 -7.4561 19 6 1.3583 2.3374 -8.5274 20 1 2.3346 2.2785 -8.9851 21 6 0.4105 3.2212 -9.0251 22 7 -0.7797 3.2926 -8.4676 23 14 0.8244 4.3093 -10.4859 24 1 0.4666 3.6060 -11.7440 25 1 0.0568 5.5771 -10.3921 26 1 2.2786 4.6098 -10.4832 27 6 1.4480 -0.5765 -6.1594 28 1 -0.3634 -1.0276 0.0028 29 1 -0.3633 0.5162 0.8886 30 1 -0.3633 0.5114 -0.8913 31 1 1.6430 -1.7393 1.2677 32 1 1.7159 -0.1886 2.1389 33 1 3.6314 -2.5060 0.1006 34 1 5.0925 -1.4906 0.1571 35 1 3.9416 -1.3502 -2.0551 36 1 3.9780 0.2238 -1.2224 37 1 2.4836 -1.2356 -3.7879 38 1 3.6620 0.6241 -5.4104 39 1 2.6508 2.1332 -5.4442 40 1 0.1781 1.5931 -7.0449 41 1 -1.4420 3.9099 -8.8155 42 1 0.4269 -0.8146 -6.4576 43 1 2.0945 -1.4534 -6.1255 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020558749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:02 Heat of formation + Delta-G solvation = -63.488095 kcal Electronic energy + Delta-G solvation = -22605.346600 eV Core-core repulsion = 19264.926340 eV Total energy + Delta-G solvation = -3340.420260 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.62354 -39.11034 -37.85692 -34.44223 -34.13084 -32.95467 -31.99837 -29.71141 -27.29698 -26.10866 -25.12462 -24.23523 -22.79223 -22.56695 -21.02119 -19.97258 -18.78025 -17.39024 -17.25614 -16.40903 -16.16658 -15.69578 -15.25255 -14.92573 -14.73800 -14.44645 -14.23683 -13.92995 -13.37019 -13.08872 -12.79965 -12.65826 -12.32872 -12.18178 -12.03937 -11.94111 -11.66850 -11.61133 -11.18430 -10.90299 -10.85720 -10.77062 -10.65612 -10.27080 -10.15004 -10.07032 -9.85281 -9.71386 -9.28036 -8.91861 -8.68270 -7.01333 -5.79865 -3.09978 2.71979 3.29252 3.42561 3.47632 3.49759 3.60350 4.31368 4.45545 4.51489 4.55633 4.64180 4.89498 4.98167 5.07105 5.13019 5.23047 5.24130 5.28578 5.36411 5.38341 5.40958 5.47077 5.50956 5.64177 5.79181 5.86272 5.87751 5.99195 6.07047 6.14632 6.19011 6.30719 6.40181 6.62171 6.72004 6.78576 6.89227 7.03134 7.66359 7.69368 8.37944 8.38621 9.49073 10.05314 10.39278 11.42351 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034031 B = 0.003160 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.584604 B = 8859.084844 C = 9211.250843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.105 4.105 3 H 0.087 0.913 4 C 0.065 3.935 5 O -0.383 6.383 6 C 0.063 3.937 7 C -0.148 4.148 8 C -0.107 4.107 9 H 0.095 0.905 10 C 0.515 3.485 11 O -0.531 6.531 12 N -0.717 5.717 13 C 0.125 3.875 14 H 0.113 0.887 15 C -0.183 4.183 16 C 0.171 3.829 17 H 0.067 0.933 18 N -0.706 5.706 19 C -0.246 4.246 20 H 0.073 0.927 21 C -0.011 4.011 22 N -0.930 5.930 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C -0.164 4.164 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.394 0.606 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.386 0.614 41 H 0.257 0.743 42 H 0.072 0.928 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.920 -13.783 17.561 23.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.124 4.124 3 H 0.105 0.895 4 C -0.011 4.011 5 O -0.302 6.302 6 C -0.014 4.014 7 C -0.186 4.186 8 C -0.128 4.128 9 H 0.113 0.887 10 C 0.300 3.700 11 O -0.408 6.408 12 N -0.367 5.367 13 C 0.021 3.979 14 H 0.131 0.869 15 C -0.226 4.226 16 C 0.058 3.942 17 H 0.085 0.915 18 N -0.344 5.344 19 C -0.377 4.377 20 H 0.091 0.909 21 C -0.208 4.208 22 N -0.578 5.578 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.204 4.204 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.228 0.772 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.584 -12.836 17.597 23.064 hybrid contribution -0.026 0.091 -0.922 0.927 sum 7.558 -12.746 16.674 22.307 Atomic orbital electron populations 1.21916 0.93764 1.01582 1.03909 1.21567 0.97192 1.00793 0.92875 0.89463 1.22728 0.80671 0.99623 0.98118 1.87942 1.20576 1.76379 1.45264 1.22569 0.99281 0.94399 0.85135 1.22209 0.93965 1.03215 0.99199 1.21462 0.96824 1.00566 0.93958 0.88705 1.20472 0.79627 0.85284 0.84588 1.90689 1.38564 1.25014 1.86485 1.46154 1.55357 1.29202 1.05996 1.22632 0.99363 0.94498 0.81359 0.86921 1.24302 0.96793 1.01182 1.00321 1.20909 0.92055 0.89302 0.91911 0.91504 1.42192 1.12874 1.43422 1.35926 1.19266 0.98274 1.14202 1.05942 0.90933 1.24787 0.96034 1.00133 0.99797 1.69664 1.04810 1.40318 1.42969 0.86160 0.77449 0.80009 0.82375 1.21648 1.21718 1.20674 1.23878 1.02184 0.98285 0.96031 0.93339 0.92630 0.89686 0.93138 0.88569 0.93011 0.88544 0.90265 0.90232 0.77211 0.91363 0.91092 0.77984 0.93354 0.90920 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.92 37.15 0.33 -1.33 16 2 C -0.11 -1.10 2.05 -90.48 -0.19 -1.29 16 3 H 0.09 1.11 8.03 -51.93 -0.42 0.69 16 4 C 0.07 0.57 6.13 37.21 0.23 0.80 16 5 O -0.38 -3.85 10.77 -35.23 -0.38 -4.23 16 6 C 0.06 0.47 6.84 37.20 0.25 0.73 16 7 C -0.15 -1.23 5.29 -26.59 -0.14 -1.37 16 8 C -0.11 -1.06 2.11 -91.58 -0.19 -1.25 16 9 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 10 C 0.51 7.11 6.88 -10.98 -0.08 7.04 16 11 O -0.53 -9.71 13.47 5.55 0.07 -9.63 16 12 N -0.72 -9.10 5.26 -53.01 -0.28 -9.38 16 13 C 0.13 2.04 4.13 -67.11 -0.28 1.77 16 14 H 0.11 2.25 7.46 -51.93 -0.39 1.86 16 15 C -0.18 -3.21 7.68 -25.92 -0.20 -3.41 16 16 C 0.17 3.33 4.55 -67.12 -0.31 3.02 16 17 H 0.07 1.27 8.11 -51.93 -0.42 0.85 16 18 N -0.71 -17.68 5.31 -52.63 -0.28 -17.96 16 19 C -0.25 -6.82 9.97 -15.06 -0.15 -6.97 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 23 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C -0.16 -2.55 7.57 -25.91 -0.20 -2.74 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.08 1.18 5.79 -51.93 -0.30 0.88 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.10 0.60 8.14 -51.92 -0.42 0.17 16 35 H 0.08 0.51 7.67 -51.93 -0.40 0.11 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.39 3.68 8.22 -40.82 -0.34 3.34 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.39 10.35 7.90 -40.82 -0.32 10.03 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 LS Contribution 343.38 15.07 5.17 5.17 Total: -1.00 -32.61 343.38 -8.19 -40.81 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -7.20 Total: 10.83 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -1.01 Total: -5.43 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: 0.17 Total: -54.89 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.30 Total: -13.87 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.61 -8.19 -40.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020558749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.682 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds