Wall clock time and date at job start Tue Mar 31 2020 07:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.57751 * 2 1 4 4 C 1.53096 * 109.52331 * 120.16187 * 2 1 3 5 5 O 1.42897 * 109.41687 * 177.51240 * 4 2 1 6 6 C 1.42901 * 114.09656 * 298.83808 * 5 4 2 7 7 C 1.53088 * 109.41579 * 61.16124 * 6 5 4 8 8 C 1.53176 * 109.16070 * 302.38909 * 7 6 5 9 9 H 1.08993 * 109.54292 * 297.02333 * 8 7 6 10 10 C 1.50705 * 109.54210 * 176.84825 * 8 7 6 11 11 O 1.21286 * 119.99804 * 239.99919 * 10 8 7 12 12 N 1.34774 * 120.00141 * 60.00492 * 10 8 7 13 13 C 1.46499 * 119.99884 * 180.02562 * 12 10 8 14 14 H 1.08998 * 112.85087 * 336.18504 * 13 12 10 15 15 C 1.53777 * 113.61486 * 107.49951 * 13 12 10 16 16 C 1.53785 * 87.08241 * 139.97730 * 15 13 12 17 17 H 1.09002 * 113.61570 * 220.01842 * 16 15 13 18 18 N 1.46500 * 113.68813 * 89.12417 * 16 15 13 19 19 C 1.36936 * 119.99618 * 105.94148 * 18 16 15 20 20 H 1.07990 * 120.00427 * 359.97438 * 19 18 16 21 21 C 1.38824 * 119.99622 * 179.97438 * 19 18 16 22 22 N 1.31617 * 120.00063 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99662 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47100 * 90.00073 * 23 21 19 25 25 H 1.48504 * 109.47148 * 209.99685 * 23 21 19 26 26 H 1.48493 * 109.47533 * 329.99863 * 23 21 19 27 27 C 1.53781 * 87.08241 * 334.56547 * 16 15 13 28 28 H 1.08997 * 109.47798 * 180.15789 * 1 2 3 29 29 H 1.08998 * 109.47221 * 300.15569 * 1 2 3 30 30 H 1.08998 * 109.47185 * 60.15442 * 1 2 3 31 31 H 1.08997 * 109.48349 * 57.52544 * 4 2 1 32 32 H 1.09004 * 109.47903 * 297.49296 * 4 2 1 33 33 H 1.08995 * 109.48544 * 301.17307 * 6 5 4 34 34 H 1.09008 * 109.47724 * 181.14041 * 6 5 4 35 35 H 1.08999 * 109.52532 * 182.48338 * 7 6 5 36 36 H 1.09000 * 109.52350 * 62.29419 * 7 6 5 37 37 H 0.97004 * 120.00019 * 359.97438 * 12 10 8 38 38 H 1.08999 * 113.61947 * 25.43156 * 15 13 12 39 39 H 1.08997 * 113.61348 * 254.52371 * 15 13 12 40 40 H 0.96998 * 120.00149 * 285.93056 * 18 16 15 41 41 H 0.96996 * 120.00147 * 180.02562 * 22 21 19 42 42 H 1.09000 * 113.61578 * 139.97748 * 27 16 15 43 43 H 1.09001 * 113.61682 * 270.80327 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7250 1.2476 5 8 3.4693 -0.7745 1.2163 6 6 4.0042 -1.4818 0.0957 7 6 3.5715 -0.7873 -1.1982 8 6 2.0418 -0.7254 -1.2483 9 1 1.6367 -1.7368 -1.2758 10 6 1.6078 0.0252 -2.4810 11 8 0.9465 1.0362 -2.3739 12 7 1.9544 -0.4271 -3.7023 13 6 1.5329 0.3028 -4.9005 14 1 0.6456 0.9135 -4.7339 15 6 2.6784 1.0546 -5.5986 16 6 2.0550 0.6070 -6.9313 17 1 2.7901 0.3095 -7.6791 18 7 1.0550 1.5401 -7.4561 19 6 1.3583 2.3374 -8.5274 20 1 2.3346 2.2785 -8.9851 21 6 0.4105 3.2212 -9.0251 22 7 -0.7797 3.2926 -8.4676 23 14 0.8244 4.3093 -10.4859 24 1 0.4666 3.6060 -11.7440 25 1 0.0568 5.5771 -10.3921 26 1 2.2786 4.6098 -10.4832 27 6 1.4480 -0.5765 -6.1594 28 1 -0.3634 -1.0276 0.0028 29 1 -0.3633 0.5162 0.8886 30 1 -0.3633 0.5114 -0.8913 31 1 1.6430 -1.7393 1.2677 32 1 1.7159 -0.1886 2.1389 33 1 3.6314 -2.5060 0.1006 34 1 5.0925 -1.4906 0.1571 35 1 3.9416 -1.3502 -2.0551 36 1 3.9780 0.2238 -1.2224 37 1 2.4836 -1.2356 -3.7879 38 1 3.6620 0.6241 -5.4104 39 1 2.6508 2.1332 -5.4442 40 1 0.1781 1.5931 -7.0449 41 1 -1.4420 3.9099 -8.8155 42 1 0.4269 -0.8146 -6.4576 43 1 2.0945 -1.4534 -6.1255 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020558749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:01 Heat of formation + Delta-G solvation = -87.401129 kcal Electronic energy + Delta-G solvation = -22606.383547 eV Core-core repulsion = 19264.926340 eV Total energy + Delta-G solvation = -3341.457207 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.62237 -40.22104 -39.06191 -35.79196 -35.26144 -34.43051 -32.94839 -31.60213 -28.12532 -26.98879 -26.52711 -26.01676 -24.33105 -23.26023 -22.05997 -20.93736 -20.18709 -19.36126 -18.28944 -17.46963 -17.05758 -16.69895 -16.56566 -16.18037 -15.86416 -15.54377 -15.39515 -15.16677 -14.98451 -14.38161 -14.20544 -13.70491 -13.48148 -13.28784 -13.22186 -13.07043 -12.86247 -12.78332 -12.59339 -12.42052 -12.18719 -11.98738 -11.82791 -11.71488 -11.57000 -11.40178 -11.32645 -10.92770 -10.84782 -10.25916 -9.94292 -9.04558 -7.97433 -5.27275 1.45988 1.48337 1.56697 1.63504 2.22372 2.54003 2.99835 3.34610 3.52182 3.63066 3.69729 3.73297 3.84672 3.89228 3.93970 4.21799 4.27815 4.29189 4.34208 4.47715 4.52105 4.62920 4.66022 4.75524 4.78934 4.81799 4.82610 4.94011 4.99199 5.10650 5.13435 5.16020 5.24081 5.30214 5.33057 5.43499 5.50946 5.70980 6.25124 6.28492 6.63617 7.29553 7.34494 8.06037 8.27069 9.26179 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034031 B = 0.003160 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.584604 B = 8859.084844 C = 9211.250843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.106 4.106 3 H 0.053 0.947 4 C 0.071 3.929 5 O -0.405 6.405 6 C 0.060 3.940 7 C -0.144 4.144 8 C -0.098 4.098 9 H 0.126 0.874 10 C 0.508 3.492 11 O -0.584 6.584 12 N -0.700 5.700 13 C 0.132 3.868 14 H 0.066 0.934 15 C -0.171 4.171 16 C 0.149 3.851 17 H 0.078 0.922 18 N -0.724 5.724 19 C -0.244 4.244 20 H 0.082 0.918 21 C -0.079 4.079 22 N -0.972 5.972 23 Si 0.977 3.023 24 H -0.283 1.283 25 H -0.299 1.299 26 H -0.267 1.267 27 C -0.136 4.136 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.055 0.945 37 H 0.417 0.583 38 H 0.106 0.894 39 H 0.030 0.970 40 H 0.371 0.629 41 H 0.251 0.749 42 H 0.060 0.940 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.171 -16.815 18.080 26.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.125 4.125 3 H 0.071 0.929 4 C -0.006 4.006 5 O -0.324 6.324 6 C -0.016 4.016 7 C -0.181 4.181 8 C -0.119 4.119 9 H 0.144 0.856 10 C 0.296 3.704 11 O -0.464 6.464 12 N -0.352 5.352 13 C 0.026 3.974 14 H 0.085 0.915 15 C -0.213 4.213 16 C 0.038 3.962 17 H 0.096 0.904 18 N -0.362 5.362 19 C -0.376 4.376 20 H 0.100 0.900 21 C -0.271 4.271 22 N -0.623 5.623 23 Si 0.805 3.195 24 H -0.210 1.210 25 H -0.226 1.226 26 H -0.192 1.192 27 C -0.176 4.176 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.119 0.881 33 H 0.094 0.906 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.073 0.927 37 H 0.255 0.745 38 H 0.124 0.876 39 H 0.049 0.951 40 H 0.203 0.797 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.917 -15.942 18.127 26.098 hybrid contribution -0.669 1.001 -1.022 1.579 sum 9.249 -14.941 17.105 24.523 Atomic orbital electron populations 1.21843 0.94166 1.02416 1.02398 1.21538 0.96865 0.99496 0.94585 0.92857 1.22725 0.80325 1.00577 0.96962 1.87923 1.21068 1.77052 1.46370 1.22770 1.00199 0.95063 0.83581 1.22229 0.92211 1.02547 1.01163 1.21491 0.98260 1.01040 0.91096 0.85589 1.21286 0.78506 0.84772 0.85829 1.90689 1.40885 1.27592 1.87240 1.45890 1.55185 1.29504 1.04578 1.22139 0.97275 0.94637 0.83308 0.91544 1.24171 0.98948 0.99054 0.99095 1.21264 0.91799 0.90185 0.92908 0.90436 1.42399 1.13483 1.44567 1.35717 1.19718 0.98296 1.13660 1.05921 0.89993 1.25651 0.96152 1.02256 1.03033 1.69838 1.05949 1.41547 1.44921 0.85092 0.77629 0.77660 0.79093 1.21021 1.22566 1.19220 1.23717 1.02239 0.98181 0.93420 0.91236 0.91913 0.93421 0.90795 0.88115 0.90566 0.87156 0.87518 0.92659 0.74506 0.87569 0.95107 0.79735 0.94040 0.92158 0.85437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.92 71.98 0.64 -2.57 16 2 C -0.11 -2.15 2.05 -10.70 -0.02 -2.17 16 3 H 0.05 1.43 8.03 -2.39 -0.02 1.41 16 4 C 0.07 1.07 6.13 72.01 0.44 1.51 16 5 O -0.41 -7.18 10.77 -148.98 -1.60 -8.78 16 6 C 0.06 0.69 6.84 72.01 0.49 1.18 16 7 C -0.14 -1.96 5.29 30.68 0.16 -1.80 16 8 C -0.10 -1.74 2.11 -11.42 -0.02 -1.76 16 9 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 10 C 0.51 13.81 6.88 87.66 0.60 14.41 16 11 O -0.58 -22.55 13.47 -3.05 -0.04 -22.60 16 12 N -0.70 -16.38 5.26 -440.02 -2.31 -18.70 16 13 C 0.13 4.26 4.13 45.52 0.19 4.44 16 14 H 0.07 2.82 7.46 -2.39 -0.02 2.80 16 15 C -0.17 -5.85 7.68 31.12 0.24 -5.61 16 16 C 0.15 5.65 4.55 45.52 0.21 5.86 16 17 H 0.08 2.77 8.11 -2.39 -0.02 2.75 16 18 N -0.72 -37.14 5.31 -320.44 -1.70 -38.85 16 19 C -0.24 -13.71 9.97 84.04 0.84 -12.88 16 20 H 0.08 4.34 7.83 -2.92 -0.02 4.31 16 21 C -0.08 -4.62 5.50 84.87 0.47 -4.15 16 22 N -0.97 -61.31 13.06 21.66 0.28 -61.02 16 23 Si 0.98 46.80 29.55 68.60 2.03 48.83 16 24 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 25 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 27 C -0.14 -3.94 7.57 31.12 0.24 -3.71 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.05 1.40 5.79 -2.39 -0.01 1.38 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.11 0.87 7.67 -2.39 -0.02 0.85 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.42 5.96 8.22 -92.71 -0.76 5.20 16 38 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 39 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.37 20.89 7.90 -92.71 -0.73 20.15 16 41 H 0.25 15.35 8.31 -92.71 -0.77 14.57 16 42 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.13 2.48 8.12 -2.39 -0.02 2.46 16 Total: -1.00 -76.32 343.38 0.63 -75.69 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: -0.49 Total: 32.67 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 4.47 Total: -7.24 kcal Atomic # 7 Polarization: -114.83 SS G_CDS: -3.73 Total: -118.57 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -1.64 Total: -31.38 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -76.32 0.63 -75.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020558749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.712 kcal (2) G-P(sol) polarization free energy of solvation -76.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds