Wall clock time and date at job start Tue Mar 31 2020 07:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.52314 * 2 1 4 4 C 1.53095 * 109.52022 * 239.87617 * 2 1 3 5 5 O 1.42900 * 109.41084 * 182.42336 * 4 2 1 6 6 C 1.42909 * 114.10163 * 61.15623 * 5 4 2 7 7 C 1.53092 * 109.41369 * 298.84292 * 6 5 4 8 8 C 1.53170 * 109.16424 * 57.60525 * 7 6 5 9 9 H 1.09009 * 109.54383 * 62.88558 * 8 7 6 10 10 C 1.50697 * 109.54483 * 183.15370 * 8 7 6 11 11 O 1.21276 * 120.00510 * 119.55869 * 10 8 7 12 12 N 1.34780 * 119.99703 * 299.55502 * 10 8 7 13 13 C 1.46501 * 119.99978 * 180.02562 * 12 10 8 14 14 H 1.09000 * 112.85237 * 23.80246 * 13 12 10 15 15 C 1.53778 * 113.61674 * 155.00221 * 13 12 10 16 16 C 1.53777 * 87.08430 * 139.97744 * 15 13 12 17 17 H 1.08998 * 113.61797 * 220.01449 * 16 15 13 18 18 N 1.46498 * 113.61156 * 89.20064 * 16 15 13 19 19 C 1.36937 * 120.00355 * 155.00134 * 18 16 15 20 20 H 1.08006 * 119.99608 * 359.97438 * 19 18 16 21 21 C 1.38806 * 120.00573 * 179.97438 * 19 18 16 22 22 N 1.31626 * 119.99842 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00329 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47163 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47423 * 120.00311 * 23 21 19 26 26 H 1.48502 * 109.47233 * 240.00144 * 23 21 19 27 27 C 1.53774 * 87.08113 * 334.56966 * 16 15 13 28 28 H 1.09001 * 109.46902 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46838 * 299.99611 * 1 2 3 30 30 H 1.09003 * 109.46992 * 59.99784 * 1 2 3 31 31 H 1.09001 * 109.48126 * 302.40029 * 4 2 1 32 32 H 1.08993 * 109.48063 * 62.43902 * 4 2 1 33 33 H 1.09001 * 109.47365 * 58.82217 * 6 5 4 34 34 H 1.08997 * 109.48206 * 178.84273 * 6 5 4 35 35 H 1.08998 * 109.51601 * 177.51225 * 7 6 5 36 36 H 1.08997 * 109.51974 * 297.69695 * 7 6 5 37 37 H 0.97005 * 119.99963 * 359.97438 * 12 10 8 38 38 H 1.08999 * 113.61357 * 254.53314 * 15 13 12 39 39 H 1.09002 * 113.61179 * 25.42849 * 15 13 12 40 40 H 0.97001 * 120.00169 * 334.99730 * 18 16 15 41 41 H 0.97005 * 119.99929 * 180.02562 * 22 21 19 42 42 H 1.09006 * 113.61430 * 270.88379 * 27 16 15 43 43 H 1.09004 * 113.61897 * 139.98068 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7242 -1.2481 5 8 3.4695 -0.7723 -1.2175 6 6 4.0057 -1.4794 -0.0973 7 6 3.5729 -0.7855 1.1970 8 6 2.0433 -0.7251 1.2479 9 1 1.6390 -1.7371 1.2737 10 6 1.6091 0.0248 2.4809 11 8 0.9536 1.0396 2.3742 12 7 1.9493 -0.4324 3.7023 13 6 1.5268 0.2963 4.9010 14 1 0.6430 0.9117 4.7327 15 6 1.4332 -0.5858 6.1571 16 6 2.0430 0.5927 6.9343 17 1 2.7739 0.2899 7.6841 18 7 1.0454 1.5290 7.4581 19 6 1.3373 2.2996 8.5518 20 1 2.3029 2.2167 9.0286 21 6 0.3923 3.1871 9.0478 22 7 -0.7846 3.2878 8.4671 23 14 0.7903 4.2377 10.5402 24 1 2.1689 3.9374 11.0035 25 1 0.6932 5.6737 10.1749 26 1 -0.1745 3.9375 11.6284 27 6 2.6732 1.0410 5.6053 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6441 -1.7389 -1.2681 32 1 1.7149 -0.1879 -2.1390 33 1 3.6337 -2.5039 -0.1023 34 1 5.0938 -1.4874 -0.1594 35 1 3.9440 -1.3483 2.0535 36 1 3.9785 0.2259 1.2212 37 1 2.4733 -1.2443 3.7877 38 1 0.4101 -0.8201 6.4509 39 1 2.0764 -1.4652 6.1220 40 1 0.1781 1.6032 7.0301 41 1 -1.4449 3.9083 8.8135 42 1 3.6555 0.6064 5.4193 43 1 2.6512 2.1202 5.4535 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020558750.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:06 Heat of formation + Delta-G solvation = -63.683939 kcal Electronic energy + Delta-G solvation = -22601.880064 eV Core-core repulsion = 19261.451311 eV Total energy + Delta-G solvation = -3340.428752 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.62347 -39.11150 -37.85832 -34.44274 -34.13089 -32.95547 -32.00209 -29.71330 -27.29869 -26.10936 -25.12121 -24.23770 -22.79698 -22.56848 -21.02182 -19.97188 -18.78235 -17.39759 -17.25699 -16.40908 -16.16623 -15.69283 -15.25228 -14.92697 -14.73863 -14.44632 -14.23560 -13.92681 -13.37634 -13.08562 -12.79833 -12.65646 -12.32997 -12.18777 -12.04950 -11.94085 -11.66840 -11.61396 -11.18388 -10.90666 -10.86921 -10.77443 -10.65632 -10.26258 -10.13750 -10.07017 -9.84382 -9.72050 -9.28196 -8.92620 -8.68452 -7.01559 -5.80214 -3.10369 2.71920 3.29200 3.42209 3.47574 3.50183 3.60246 4.31300 4.45488 4.51529 4.55378 4.64092 4.89444 4.98141 5.07181 5.12902 5.23001 5.24135 5.28530 5.36346 5.38345 5.40870 5.46930 5.50865 5.64069 5.79118 5.86502 5.87578 5.98955 6.07054 6.14539 6.18993 6.30654 6.39944 6.61834 6.71956 6.78297 6.89138 7.02773 7.66344 7.69425 8.37688 8.38421 9.48765 10.04998 10.38912 11.42014 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034333 B = 0.003153 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.349512 B = 8878.379876 C = 9235.844735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 H 0.087 0.913 4 C 0.065 3.935 5 O -0.383 6.383 6 C 0.063 3.937 7 C -0.148 4.148 8 C -0.107 4.107 9 H 0.095 0.905 10 C 0.515 3.485 11 O -0.531 6.531 12 N -0.717 5.717 13 C 0.125 3.875 14 H 0.113 0.887 15 C -0.165 4.165 16 C 0.172 3.828 17 H 0.068 0.932 18 N -0.706 5.706 19 C -0.245 4.245 20 H 0.073 0.927 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.909 3.091 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.183 4.183 28 H 0.048 0.952 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.394 0.606 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.068 0.932 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.953 -13.783 -17.576 23.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.124 4.124 3 H 0.105 0.895 4 C -0.011 4.011 5 O -0.302 6.302 6 C -0.014 4.014 7 C -0.186 4.186 8 C -0.128 4.128 9 H 0.113 0.887 10 C 0.300 3.700 11 O -0.408 6.408 12 N -0.367 5.367 13 C 0.021 3.979 14 H 0.131 0.869 15 C -0.204 4.204 16 C 0.058 3.942 17 H 0.086 0.914 18 N -0.344 5.344 19 C -0.376 4.376 20 H 0.091 0.909 21 C -0.208 4.208 22 N -0.577 5.577 23 Si 0.740 3.260 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.226 4.226 28 H 0.067 0.933 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.228 0.772 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.624 -12.846 -17.601 23.086 hybrid contribution -0.043 0.087 0.920 0.925 sum 7.581 -12.759 -16.681 22.327 Atomic orbital electron populations 1.21916 0.93767 1.01589 1.03879 1.21570 0.97184 1.00811 0.92884 0.89461 1.22726 0.80669 0.99627 0.98112 1.87943 1.20556 1.76383 1.45285 1.22571 0.99267 0.94405 0.85140 1.22206 0.93953 1.03219 0.99197 1.21459 0.96827 1.00570 0.93953 0.88711 1.20465 0.79570 0.85334 0.84588 1.90688 1.38745 1.24815 1.86503 1.46156 1.55702 1.28882 1.05973 1.22632 0.99316 0.94563 0.81367 0.86939 1.23895 1.02195 0.98309 0.96049 1.20906 0.92021 0.89310 0.91934 0.91421 1.42203 1.14138 1.44294 1.33763 1.19315 0.99112 1.14900 1.04285 0.90878 1.24788 0.96150 1.00169 0.99687 1.69683 1.05685 1.40020 1.42352 0.86091 0.77398 0.80168 0.82347 1.20476 1.21790 1.21808 1.24305 0.96817 1.01195 1.00272 0.93333 0.89726 0.92614 0.93139 0.88567 0.93014 0.88542 0.90261 0.90232 0.77210 0.90911 0.90403 0.77984 0.93409 0.91346 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.92 37.16 0.33 -1.32 16 2 C -0.11 -1.11 2.05 -90.48 -0.19 -1.29 16 3 H 0.09 1.11 8.02 -51.93 -0.42 0.69 16 4 C 0.07 0.57 6.13 37.21 0.23 0.80 16 5 O -0.38 -3.85 10.77 -35.23 -0.38 -4.23 16 6 C 0.06 0.47 6.84 37.21 0.25 0.73 16 7 C -0.15 -1.23 5.30 -26.60 -0.14 -1.37 16 8 C -0.11 -1.06 2.11 -91.59 -0.19 -1.25 16 9 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 10 C 0.51 7.11 6.87 -10.99 -0.08 7.04 16 11 O -0.53 -9.70 13.48 5.56 0.07 -9.63 16 12 N -0.72 -9.10 5.26 -53.02 -0.28 -9.38 16 13 C 0.13 2.04 4.12 -67.12 -0.28 1.76 16 14 H 0.11 2.24 7.46 -51.93 -0.39 1.86 16 15 C -0.16 -2.56 7.58 -25.92 -0.20 -2.76 16 16 C 0.17 3.33 4.56 -67.12 -0.31 3.02 16 17 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 18 N -0.71 -17.66 5.31 -52.64 -0.28 -17.94 16 19 C -0.25 -6.79 9.97 -15.06 -0.15 -6.94 16 20 H 0.07 1.96 7.83 -52.48 -0.41 1.54 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 23 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 C -0.18 -3.20 7.68 -25.92 -0.20 -3.40 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 1.18 5.81 -51.93 -0.30 0.87 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.51 7.70 -51.93 -0.40 0.11 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.39 3.68 8.24 -40.82 -0.34 3.34 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 40 H 0.39 10.35 7.90 -40.82 -0.32 10.03 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 343.45 15.07 5.18 5.18 Total: -1.00 -32.62 343.45 -8.19 -40.81 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -7.20 Total: 10.80 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -1.01 Total: -5.42 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: 0.17 Total: -54.87 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.30 Total: -13.86 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.62 -8.19 -40.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020558750.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.870 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds