Wall clock time and date at job start Tue Mar 31 2020 07:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.52314 * 2 1 4 4 C 1.53095 * 109.52022 * 239.87617 * 2 1 3 5 5 O 1.42900 * 109.41084 * 182.42336 * 4 2 1 6 6 C 1.42909 * 114.10163 * 61.15623 * 5 4 2 7 7 C 1.53092 * 109.41369 * 298.84292 * 6 5 4 8 8 C 1.53170 * 109.16424 * 57.60525 * 7 6 5 9 9 H 1.09009 * 109.54383 * 62.88558 * 8 7 6 10 10 C 1.50697 * 109.54483 * 183.15370 * 8 7 6 11 11 O 1.21276 * 120.00510 * 119.55869 * 10 8 7 12 12 N 1.34780 * 119.99703 * 299.55502 * 10 8 7 13 13 C 1.46501 * 119.99978 * 180.02562 * 12 10 8 14 14 H 1.09000 * 112.85237 * 23.80246 * 13 12 10 15 15 C 1.53778 * 113.61674 * 155.00221 * 13 12 10 16 16 C 1.53777 * 87.08430 * 139.97744 * 15 13 12 17 17 H 1.08998 * 113.61797 * 220.01449 * 16 15 13 18 18 N 1.46498 * 113.61156 * 89.20064 * 16 15 13 19 19 C 1.36937 * 120.00355 * 155.00134 * 18 16 15 20 20 H 1.08006 * 119.99608 * 359.97438 * 19 18 16 21 21 C 1.38806 * 120.00573 * 179.97438 * 19 18 16 22 22 N 1.31626 * 119.99842 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00329 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47163 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47423 * 120.00311 * 23 21 19 26 26 H 1.48502 * 109.47233 * 240.00144 * 23 21 19 27 27 C 1.53774 * 87.08113 * 334.56966 * 16 15 13 28 28 H 1.09001 * 109.46902 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46838 * 299.99611 * 1 2 3 30 30 H 1.09003 * 109.46992 * 59.99784 * 1 2 3 31 31 H 1.09001 * 109.48126 * 302.40029 * 4 2 1 32 32 H 1.08993 * 109.48063 * 62.43902 * 4 2 1 33 33 H 1.09001 * 109.47365 * 58.82217 * 6 5 4 34 34 H 1.08997 * 109.48206 * 178.84273 * 6 5 4 35 35 H 1.08998 * 109.51601 * 177.51225 * 7 6 5 36 36 H 1.08997 * 109.51974 * 297.69695 * 7 6 5 37 37 H 0.97005 * 119.99963 * 359.97438 * 12 10 8 38 38 H 1.08999 * 113.61357 * 254.53314 * 15 13 12 39 39 H 1.09002 * 113.61179 * 25.42849 * 15 13 12 40 40 H 0.97001 * 120.00169 * 334.99730 * 18 16 15 41 41 H 0.97005 * 119.99929 * 180.02562 * 22 21 19 42 42 H 1.09006 * 113.61430 * 270.88379 * 27 16 15 43 43 H 1.09004 * 113.61897 * 139.98068 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7242 -1.2481 5 8 3.4695 -0.7723 -1.2175 6 6 4.0057 -1.4794 -0.0973 7 6 3.5729 -0.7855 1.1970 8 6 2.0433 -0.7251 1.2479 9 1 1.6390 -1.7371 1.2737 10 6 1.6091 0.0248 2.4809 11 8 0.9536 1.0396 2.3742 12 7 1.9493 -0.4324 3.7023 13 6 1.5268 0.2963 4.9010 14 1 0.6430 0.9117 4.7327 15 6 1.4332 -0.5858 6.1571 16 6 2.0430 0.5927 6.9343 17 1 2.7739 0.2899 7.6841 18 7 1.0454 1.5290 7.4581 19 6 1.3373 2.2996 8.5518 20 1 2.3029 2.2167 9.0286 21 6 0.3923 3.1871 9.0478 22 7 -0.7846 3.2878 8.4671 23 14 0.7903 4.2377 10.5402 24 1 2.1689 3.9374 11.0035 25 1 0.6932 5.6737 10.1749 26 1 -0.1745 3.9375 11.6284 27 6 2.6732 1.0410 5.6053 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6441 -1.7389 -1.2681 32 1 1.7149 -0.1879 -2.1390 33 1 3.6337 -2.5039 -0.1023 34 1 5.0938 -1.4874 -0.1594 35 1 3.9440 -1.3483 2.0535 36 1 3.9785 0.2259 1.2212 37 1 2.4733 -1.2443 3.7877 38 1 0.4101 -0.8201 6.4509 39 1 2.0764 -1.4652 6.1220 40 1 0.1781 1.6032 7.0301 41 1 -1.4449 3.9083 8.8135 42 1 3.6555 0.6064 5.4193 43 1 2.6512 2.1202 5.4535 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020558750.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:05 Heat of formation + Delta-G solvation = -87.605892 kcal Electronic energy + Delta-G solvation = -22602.917397 eV Core-core repulsion = 19261.451311 eV Total energy + Delta-G solvation = -3341.466086 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.62214 -40.22178 -39.06270 -35.79331 -35.26153 -34.42888 -32.95052 -31.60358 -28.12621 -26.98920 -26.52156 -26.02053 -24.33481 -23.26098 -22.06058 -20.93619 -20.18773 -19.36650 -18.28998 -17.46691 -17.05830 -16.69888 -16.56432 -16.18024 -15.86246 -15.54303 -15.39443 -15.16452 -14.98524 -14.37872 -14.20340 -13.71456 -13.48593 -13.28789 -13.22191 -13.07034 -12.87807 -12.80549 -12.59264 -12.42120 -12.13411 -11.98702 -11.82518 -11.72330 -11.57149 -11.40129 -11.32163 -10.93591 -10.85279 -10.26138 -9.94278 -9.04764 -7.97611 -5.27523 1.46046 1.47523 1.57536 1.63503 2.22379 2.53861 2.99754 3.34634 3.52157 3.63125 3.69699 3.73306 3.84752 3.89252 3.93962 4.21739 4.27782 4.29544 4.34052 4.47637 4.52050 4.62878 4.65944 4.75513 4.78937 4.81828 4.82575 4.93961 4.99253 5.10610 5.13465 5.15984 5.24241 5.30023 5.33004 5.43202 5.50979 5.70888 6.25068 6.28437 6.63618 7.29421 7.34469 8.05778 8.26784 9.26162 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034333 B = 0.003153 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.349512 B = 8878.379876 C = 9235.844735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.106 4.106 3 H 0.053 0.947 4 C 0.071 3.929 5 O -0.405 6.405 6 C 0.060 3.940 7 C -0.143 4.143 8 C -0.098 4.098 9 H 0.126 0.874 10 C 0.508 3.492 11 O -0.584 6.584 12 N -0.700 5.700 13 C 0.132 3.868 14 H 0.066 0.934 15 C -0.137 4.137 16 C 0.149 3.851 17 H 0.078 0.922 18 N -0.724 5.724 19 C -0.243 4.243 20 H 0.083 0.917 21 C -0.080 4.080 22 N -0.972 5.972 23 Si 0.976 3.024 24 H -0.261 1.261 25 H -0.297 1.297 26 H -0.292 1.292 27 C -0.171 4.171 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.054 0.946 37 H 0.417 0.583 38 H 0.059 0.941 39 H 0.127 0.873 40 H 0.371 0.629 41 H 0.251 0.749 42 H 0.106 0.894 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.207 -16.861 -18.078 26.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.125 4.125 3 H 0.071 0.929 4 C -0.006 4.006 5 O -0.324 6.324 6 C -0.016 4.016 7 C -0.181 4.181 8 C -0.119 4.119 9 H 0.144 0.856 10 C 0.296 3.704 11 O -0.464 6.464 12 N -0.352 5.352 13 C 0.026 3.974 14 H 0.084 0.916 15 C -0.176 4.176 16 C 0.039 3.961 17 H 0.096 0.904 18 N -0.362 5.362 19 C -0.374 4.374 20 H 0.101 0.899 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.805 3.195 24 H -0.185 1.185 25 H -0.225 1.225 26 H -0.219 1.219 27 C -0.212 4.212 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.119 0.881 33 H 0.094 0.906 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.073 0.927 37 H 0.255 0.745 38 H 0.078 0.922 39 H 0.145 0.855 40 H 0.203 0.797 41 H 0.059 0.941 42 H 0.125 0.875 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 9.962 -16.000 -18.115 26.141 hybrid contribution -0.687 1.013 1.013 1.589 sum 9.275 -14.986 -17.102 24.558 Atomic orbital electron populations 1.21844 0.94164 1.02415 1.02380 1.21542 0.96862 0.99507 0.94594 0.92865 1.22724 0.80321 1.00585 0.96955 1.87924 1.21052 1.77057 1.46390 1.22772 1.00182 0.95072 0.83585 1.22225 0.92208 1.02544 1.01160 1.21489 0.98255 1.01057 0.91092 0.85584 1.21278 0.78446 0.84821 0.85830 1.90688 1.41066 1.27395 1.87258 1.45892 1.55517 1.29199 1.04554 1.22141 0.97260 0.94688 0.83303 0.91555 1.23729 1.02212 0.98241 0.93449 1.21261 0.91775 0.90150 0.92953 0.90350 1.42412 1.14764 1.45476 1.33508 1.19760 0.99062 1.14264 1.04346 0.89943 1.25651 0.96283 1.02205 1.03014 1.69853 1.06847 1.41273 1.44312 0.85027 0.77883 0.77787 0.78784 1.18535 1.22453 1.21909 1.24173 0.98953 0.99087 0.99035 0.91232 0.93463 0.91887 0.90791 0.88113 0.90564 0.87157 0.87521 0.92669 0.74505 0.92181 0.85466 0.79746 0.94057 0.87545 0.95087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.92 71.98 0.64 -2.56 16 2 C -0.11 -2.15 2.05 -10.70 -0.02 -2.17 16 3 H 0.05 1.43 8.02 -2.39 -0.02 1.41 16 4 C 0.07 1.07 6.13 72.01 0.44 1.51 16 5 O -0.41 -7.18 10.77 -148.98 -1.60 -8.78 16 6 C 0.06 0.69 6.84 72.01 0.49 1.18 16 7 C -0.14 -1.96 5.30 30.68 0.16 -1.80 16 8 C -0.10 -1.74 2.11 -11.42 -0.02 -1.76 16 9 H 0.13 1.51 8.14 -2.38 -0.02 1.49 16 10 C 0.51 13.80 6.87 87.66 0.60 14.41 16 11 O -0.58 -22.55 13.48 -3.02 -0.04 -22.59 16 12 N -0.70 -16.37 5.26 -440.04 -2.32 -18.69 16 13 C 0.13 4.24 4.12 45.52 0.19 4.43 16 14 H 0.07 2.81 7.46 -2.39 -0.02 2.80 16 15 C -0.14 -3.96 7.58 31.12 0.24 -3.73 16 16 C 0.15 5.65 4.56 45.51 0.21 5.86 16 17 H 0.08 2.80 8.10 -2.39 -0.02 2.78 16 18 N -0.72 -37.11 5.31 -320.47 -1.70 -38.81 16 19 C -0.24 -13.60 9.97 84.03 0.84 -12.76 16 20 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 21 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 22 N -0.97 -61.32 13.06 21.65 0.28 -61.03 16 23 Si 0.98 46.78 29.55 68.60 2.03 48.81 16 24 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 26 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 27 C -0.17 -5.82 7.68 31.12 0.24 -5.58 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 1.38 5.81 -2.39 -0.01 1.37 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.11 0.87 7.70 -2.39 -0.02 0.85 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.42 5.96 8.24 -92.70 -0.76 5.19 16 38 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.13 2.47 8.12 -2.39 -0.02 2.45 16 40 H 0.37 20.89 7.90 -92.71 -0.73 20.15 16 41 H 0.25 15.30 8.31 -92.70 -0.77 14.53 16 42 H 0.11 2.82 8.14 -2.38 -0.02 2.80 16 43 H 0.03 1.29 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -76.34 343.45 0.63 -75.71 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: -0.49 Total: 32.56 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 4.47 Total: -7.17 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -3.74 Total: -118.53 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -1.64 Total: -31.37 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -76.34 0.63 -75.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020558750.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.893 kcal (2) G-P(sol) polarization free energy of solvation -76.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds