Wall clock time and date at job start Tue Mar 31 2020 07:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.52539 * 2 1 4 4 C 1.53099 * 109.52312 * 120.12322 * 2 1 3 5 5 O 1.42904 * 109.41383 * 62.29204 * 4 2 1 6 6 C 1.42897 * 114.09633 * 61.16086 * 5 4 2 7 7 C 1.53087 * 109.41684 * 298.83795 * 6 5 4 8 8 C 1.53176 * 109.52268 * 239.80603 * 2 1 3 9 9 H 1.08998 * 109.54364 * 177.21181 * 8 2 1 10 10 C 1.50695 * 109.54147 * 56.94104 * 8 2 1 11 11 O 1.21281 * 120.00344 * 11.19881 * 10 8 2 12 12 N 1.34784 * 120.00072 * 191.19555 * 10 8 2 13 13 C 1.46498 * 119.99848 * 180.02562 * 12 10 8 14 14 H 1.08990 * 112.85532 * 336.19723 * 13 12 10 15 15 C 1.53783 * 113.61050 * 107.50973 * 13 12 10 16 16 C 1.53782 * 87.08598 * 89.11396 * 15 13 12 17 17 H 1.09002 * 113.60811 * 270.88460 * 16 15 13 18 18 N 1.46491 * 113.69288 * 139.99116 * 16 15 13 19 19 C 1.36938 * 119.99988 * 107.46155 * 18 16 15 20 20 H 1.07999 * 120.00134 * 0.02562 * 19 18 16 21 21 C 1.38818 * 119.99773 * 179.97438 * 19 18 16 22 22 N 1.31614 * 119.99636 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00231 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47041 * 89.99779 * 23 21 19 25 25 H 1.48498 * 109.47345 * 210.00039 * 23 21 19 26 26 H 1.48501 * 109.47174 * 329.99906 * 23 21 19 27 27 C 1.53784 * 87.07961 * 25.42981 * 16 15 13 28 28 H 1.09008 * 109.47275 * 294.14318 * 1 2 3 29 29 H 1.09000 * 109.46949 * 54.14087 * 1 2 3 30 30 H 1.08994 * 109.47498 * 174.14774 * 1 2 3 31 31 H 1.08995 * 109.47976 * 182.27730 * 4 2 1 32 32 H 1.09003 * 109.47452 * 302.31353 * 4 2 1 33 33 H 1.09000 * 109.48250 * 58.82710 * 6 5 4 34 34 H 1.09002 * 109.48569 * 178.85489 * 6 5 4 35 35 H 1.08999 * 109.52397 * 177.51267 * 7 6 5 36 36 H 1.08997 * 109.52516 * 297.64223 * 7 6 5 37 37 H 0.97000 * 119.99458 * 0.02562 * 12 10 8 38 38 H 1.09007 * 113.61101 * 203.66331 * 15 13 12 39 39 H 1.08997 * 113.61754 * 334.56073 * 15 13 12 40 40 H 0.97003 * 119.99953 * 287.46129 * 18 16 15 41 41 H 0.97005 * 119.99881 * 179.97438 * 22 21 19 42 42 H 1.09001 * 113.61456 * 220.02174 * 27 16 15 43 43 H 1.08999 * 113.69077 * 89.12780 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0416 -0.7242 1.2481 5 8 1.6097 -2.0860 1.2176 6 6 2.0969 -2.8277 0.0975 7 6 1.5875 -2.1881 -1.1967 8 6 2.0418 -0.7261 -1.2478 9 1 3.1307 -0.6833 -1.2737 10 6 1.4801 -0.0665 -2.4808 11 8 0.9135 1.0022 -2.3922 12 7 1.6074 -0.6641 -3.6822 13 6 1.0618 -0.0225 -4.8809 14 1 0.2539 0.6741 -4.6577 15 6 2.1385 0.5580 -5.8130 16 6 2.1734 -0.8173 -6.5001 17 1 2.8833 -1.5119 -6.0508 18 7 2.2945 -0.7440 -7.9582 19 6 3.4744 -1.0827 -8.5652 20 1 4.3155 -1.4044 -7.9690 21 6 3.5889 -1.0137 -9.9469 22 7 4.7228 -1.3398 -10.5302 23 14 2.1339 -0.4581 -10.9782 24 1 2.1826 1.0162 -11.1491 25 1 2.1920 -1.1130 -12.3097 26 1 0.8703 -0.8358 -10.2955 27 6 0.7284 -1.0109 -6.0109 28 1 -0.3634 0.4204 0.9378 29 1 -0.3633 0.6020 -0.8329 30 1 -0.3634 -1.0222 -0.1048 31 1 3.1308 -0.6886 1.2681 32 1 1.6453 -0.2370 2.1390 33 1 3.1868 -2.8197 0.1025 34 1 1.7406 -3.8559 0.1595 35 1 1.9939 -2.7259 -2.0533 36 1 0.4987 -2.2333 -1.2214 37 1 2.0603 -1.5189 -3.7530 38 1 1.7733 1.3585 -6.4565 39 1 3.0664 0.8145 -5.3019 40 1 1.5390 -0.4554 -8.4937 41 1 4.8027 -1.2919 -11.4958 42 1 0.5180 -2.0210 -5.6595 43 1 -0.0233 -0.6400 -6.7077 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020558751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:10 Heat of formation + Delta-G solvation = -56.142701 kcal Electronic energy + Delta-G solvation = -22697.886014 eV Core-core repulsion = 19357.784274 eV Total energy + Delta-G solvation = -3340.101740 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.85465 -39.31807 -37.94841 -34.41851 -34.26466 -32.90750 -31.78402 -30.44416 -27.46484 -26.17133 -25.27958 -24.50865 -23.40774 -22.05426 -21.21436 -19.31455 -19.19522 -17.60721 -17.37937 -16.51709 -16.28683 -15.78494 -15.50487 -15.08527 -14.86961 -14.39659 -14.29817 -13.95772 -13.73952 -13.34877 -12.87447 -12.68899 -12.36420 -12.23197 -12.12302 -12.05076 -11.85645 -11.64537 -11.33906 -11.03349 -10.92954 -10.83601 -10.57218 -10.43585 -10.24545 -10.12642 -9.92676 -9.61934 -9.48968 -8.97919 -8.84321 -7.33145 -5.83770 -3.19805 2.58693 3.11492 3.33187 3.36267 3.41552 3.58499 4.23105 4.41248 4.45647 4.53229 4.62880 4.83215 4.85868 4.92535 5.05551 5.14474 5.19574 5.24454 5.28211 5.34031 5.37327 5.42129 5.47333 5.57201 5.65832 5.71560 5.78084 5.85087 5.95550 6.06245 6.08306 6.14158 6.27042 6.41672 6.48178 6.54314 6.87871 6.91889 7.52484 7.91629 8.22813 8.35774 9.13192 9.85883 10.05377 11.34346 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035853 B = 0.003215 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.784173 B = 8708.139104 C = 9063.571902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.106 4.106 3 H 0.087 0.913 4 C 0.065 3.935 5 O -0.380 6.380 6 C 0.062 3.938 7 C -0.152 4.152 8 C -0.106 4.106 9 H 0.100 0.900 10 C 0.522 3.478 11 O -0.538 6.538 12 N -0.706 5.706 13 C 0.116 3.884 14 H 0.096 0.904 15 C -0.176 4.176 16 C 0.173 3.827 17 H 0.081 0.919 18 N -0.737 5.737 19 C -0.251 4.251 20 H 0.090 0.910 21 C 0.006 3.994 22 N -0.932 5.932 23 Si 0.885 3.115 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.277 1.277 27 C -0.163 4.163 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.400 0.600 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.363 0.637 41 H 0.260 0.740 42 H 0.067 0.933 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.206 -1.350 22.726 23.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.125 4.125 3 H 0.106 0.894 4 C -0.012 4.012 5 O -0.298 6.298 6 C -0.015 4.015 7 C -0.190 4.190 8 C -0.128 4.128 9 H 0.118 0.882 10 C 0.308 3.692 11 O -0.415 6.415 12 N -0.357 5.357 13 C 0.011 3.989 14 H 0.114 0.886 15 C -0.218 4.218 16 C 0.061 3.939 17 H 0.099 0.901 18 N -0.376 5.376 19 C -0.381 4.381 20 H 0.108 0.892 21 C -0.190 4.190 22 N -0.579 5.579 23 Si 0.715 3.285 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.202 4.202 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.235 0.765 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.196 0.804 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.478 -0.757 22.821 24.027 hybrid contribution -0.427 0.156 -1.272 1.351 sum -7.905 -0.601 21.549 22.961 Atomic orbital electron populations 1.21941 0.93877 1.02305 1.02674 1.21537 0.97984 0.99959 0.92989 0.89443 1.22688 0.98316 0.82256 0.97961 1.87937 1.74145 1.22501 1.45248 1.22565 0.98177 0.95662 0.85050 1.22287 1.03152 0.94146 0.99438 1.21422 1.01782 0.95986 0.93587 0.88202 1.20430 0.79237 0.85263 0.84294 1.90650 1.42764 1.21896 1.86166 1.45751 1.58851 1.24512 1.06570 1.21785 0.97516 0.96197 0.83419 0.88576 1.24267 0.98191 1.01245 0.98096 1.21598 0.93363 0.94156 0.84771 0.90096 1.42747 1.13311 1.80369 1.01187 1.19122 0.90169 1.38007 0.90760 0.89183 1.24701 0.96711 1.01229 0.96384 1.69701 1.24434 1.54218 1.09569 0.86544 0.82962 0.78667 0.80321 1.20994 1.21661 1.20268 1.23878 1.00516 0.98829 0.97012 0.92991 0.90526 0.92596 0.93102 0.88574 0.92877 0.88499 0.90204 0.89971 0.76520 0.89707 0.92023 0.80373 0.92968 0.91456 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.40 37.15 0.31 -1.24 16 2 C -0.11 -0.98 2.39 -90.48 -0.22 -1.20 16 3 H 0.09 0.86 8.08 -51.93 -0.42 0.45 16 4 C 0.06 0.51 6.25 37.21 0.23 0.74 16 5 O -0.38 -3.49 10.30 -35.23 -0.36 -3.86 16 6 C 0.06 0.44 6.84 37.20 0.25 0.70 16 7 C -0.15 -1.15 4.81 -26.59 -0.13 -1.28 16 8 C -0.11 -0.97 2.46 -91.59 -0.23 -1.20 16 9 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 10 C 0.52 6.44 6.80 -10.98 -0.07 6.36 16 11 O -0.54 -8.49 13.60 5.56 0.08 -8.41 16 12 N -0.71 -8.31 5.10 -53.02 -0.27 -8.59 16 13 C 0.12 1.62 4.33 -67.11 -0.29 1.33 16 14 H 0.10 1.42 7.46 -51.93 -0.39 1.04 16 15 C -0.18 -2.89 7.68 -25.92 -0.20 -3.09 16 16 C 0.17 3.09 4.35 -67.12 -0.29 2.80 16 17 H 0.08 1.44 8.10 -51.93 -0.42 1.01 16 18 N -0.74 -16.85 5.21 -52.64 -0.27 -17.13 16 19 C -0.25 -6.91 10.45 -15.06 -0.16 -7.07 16 20 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 21 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 22 N -0.93 -28.88 13.97 55.49 0.78 -28.11 16 23 Si 0.88 21.75 27.74 -169.99 -4.71 17.04 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 27 C -0.16 -2.34 7.58 -25.91 -0.20 -2.53 16 28 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 29 H 0.08 0.97 5.87 -51.93 -0.30 0.66 16 30 H 0.06 0.57 6.03 -51.93 -0.31 0.26 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.49 7.18 -51.93 -0.37 0.12 16 36 H 0.08 0.70 6.50 -51.93 -0.34 0.36 16 37 H 0.40 3.89 7.59 -40.82 -0.31 3.58 16 38 H 0.08 1.46 8.14 -51.92 -0.42 1.03 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.36 8.18 5.79 -40.82 -0.24 7.94 16 41 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.09 1.29 8.12 -51.93 -0.42 0.86 16 LS Contribution 334.84 15.07 5.05 5.05 Total: -1.00 -32.67 334.84 -7.72 -40.39 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -6.92 Total: 9.21 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -1.08 Total: -5.60 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.23 Total: -53.82 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -0.29 Total: -12.27 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.04 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.67 -7.72 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020558751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.757 kcal (2) G-P(sol) polarization free energy of solvation -32.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds