Wall clock time and date at job start Tue Mar 31 2020 07:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.52539 * 2 1 4 4 C 1.53099 * 109.52312 * 120.12322 * 2 1 3 5 5 O 1.42904 * 109.41383 * 62.29204 * 4 2 1 6 6 C 1.42897 * 114.09633 * 61.16086 * 5 4 2 7 7 C 1.53087 * 109.41684 * 298.83795 * 6 5 4 8 8 C 1.53176 * 109.52268 * 239.80603 * 2 1 3 9 9 H 1.08998 * 109.54364 * 177.21181 * 8 2 1 10 10 C 1.50695 * 109.54147 * 56.94104 * 8 2 1 11 11 O 1.21281 * 120.00344 * 11.19881 * 10 8 2 12 12 N 1.34784 * 120.00072 * 191.19555 * 10 8 2 13 13 C 1.46498 * 119.99848 * 180.02562 * 12 10 8 14 14 H 1.08990 * 112.85532 * 336.19723 * 13 12 10 15 15 C 1.53783 * 113.61050 * 107.50973 * 13 12 10 16 16 C 1.53782 * 87.08598 * 89.11396 * 15 13 12 17 17 H 1.09002 * 113.60811 * 270.88460 * 16 15 13 18 18 N 1.46491 * 113.69288 * 139.99116 * 16 15 13 19 19 C 1.36938 * 119.99988 * 107.46155 * 18 16 15 20 20 H 1.07999 * 120.00134 * 0.02562 * 19 18 16 21 21 C 1.38818 * 119.99773 * 179.97438 * 19 18 16 22 22 N 1.31614 * 119.99636 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00231 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47041 * 89.99779 * 23 21 19 25 25 H 1.48498 * 109.47345 * 210.00039 * 23 21 19 26 26 H 1.48501 * 109.47174 * 329.99906 * 23 21 19 27 27 C 1.53784 * 87.07961 * 25.42981 * 16 15 13 28 28 H 1.09008 * 109.47275 * 294.14318 * 1 2 3 29 29 H 1.09000 * 109.46949 * 54.14087 * 1 2 3 30 30 H 1.08994 * 109.47498 * 174.14774 * 1 2 3 31 31 H 1.08995 * 109.47976 * 182.27730 * 4 2 1 32 32 H 1.09003 * 109.47452 * 302.31353 * 4 2 1 33 33 H 1.09000 * 109.48250 * 58.82710 * 6 5 4 34 34 H 1.09002 * 109.48569 * 178.85489 * 6 5 4 35 35 H 1.08999 * 109.52397 * 177.51267 * 7 6 5 36 36 H 1.08997 * 109.52516 * 297.64223 * 7 6 5 37 37 H 0.97000 * 119.99458 * 0.02562 * 12 10 8 38 38 H 1.09007 * 113.61101 * 203.66331 * 15 13 12 39 39 H 1.08997 * 113.61754 * 334.56073 * 15 13 12 40 40 H 0.97003 * 119.99953 * 287.46129 * 18 16 15 41 41 H 0.97005 * 119.99881 * 179.97438 * 22 21 19 42 42 H 1.09001 * 113.61456 * 220.02174 * 27 16 15 43 43 H 1.08999 * 113.69077 * 89.12780 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0416 -0.7242 1.2481 5 8 1.6097 -2.0860 1.2176 6 6 2.0969 -2.8277 0.0975 7 6 1.5875 -2.1881 -1.1967 8 6 2.0418 -0.7261 -1.2478 9 1 3.1307 -0.6833 -1.2737 10 6 1.4801 -0.0665 -2.4808 11 8 0.9135 1.0022 -2.3922 12 7 1.6074 -0.6641 -3.6822 13 6 1.0618 -0.0225 -4.8809 14 1 0.2539 0.6741 -4.6577 15 6 2.1385 0.5580 -5.8130 16 6 2.1734 -0.8173 -6.5001 17 1 2.8833 -1.5119 -6.0508 18 7 2.2945 -0.7440 -7.9582 19 6 3.4744 -1.0827 -8.5652 20 1 4.3155 -1.4044 -7.9690 21 6 3.5889 -1.0137 -9.9469 22 7 4.7228 -1.3398 -10.5302 23 14 2.1339 -0.4581 -10.9782 24 1 2.1826 1.0162 -11.1491 25 1 2.1920 -1.1130 -12.3097 26 1 0.8703 -0.8358 -10.2955 27 6 0.7284 -1.0109 -6.0109 28 1 -0.3634 0.4204 0.9378 29 1 -0.3633 0.6020 -0.8329 30 1 -0.3634 -1.0222 -0.1048 31 1 3.1308 -0.6886 1.2681 32 1 1.6453 -0.2370 2.1390 33 1 3.1868 -2.8197 0.1025 34 1 1.7406 -3.8559 0.1595 35 1 1.9939 -2.7259 -2.0533 36 1 0.4987 -2.2333 -1.2214 37 1 2.0603 -1.5189 -3.7530 38 1 1.7733 1.3585 -6.4565 39 1 3.0664 0.8145 -5.3019 40 1 1.5390 -0.4554 -8.4937 41 1 4.8027 -1.2919 -11.4958 42 1 0.5180 -2.0210 -5.6595 43 1 -0.0233 -0.6400 -6.7077 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020558751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:09 Heat of formation + Delta-G solvation = -79.449883 kcal Electronic energy + Delta-G solvation = -22698.896690 eV Core-core repulsion = 19357.784274 eV Total energy + Delta-G solvation = -3341.112415 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.74861 -40.32713 -39.04002 -35.89510 -35.18473 -34.26722 -32.83019 -32.08997 -28.26317 -27.00759 -26.56730 -26.09222 -24.05600 -23.64606 -22.22961 -20.65803 -20.05611 -19.42103 -18.30744 -17.44519 -17.01613 -16.84930 -16.48848 -16.38758 -16.04133 -15.70093 -15.18365 -15.15212 -14.71974 -14.52040 -14.33166 -14.06556 -13.80215 -13.44301 -13.35419 -12.95112 -12.86981 -12.57486 -12.52888 -12.34075 -12.10467 -12.05585 -11.86909 -11.80017 -11.52090 -11.30976 -11.21676 -10.90438 -10.89804 -10.31757 -9.97005 -9.28836 -8.03334 -5.36509 1.38180 1.41351 1.48487 1.61629 2.15001 2.48080 3.02181 3.26872 3.51149 3.60608 3.69083 3.71579 3.75531 3.83377 3.99099 4.18433 4.22990 4.25978 4.26977 4.50818 4.59336 4.65047 4.69599 4.72639 4.77602 4.83675 4.86833 4.91021 4.94812 5.09325 5.12367 5.15880 5.18422 5.24147 5.30556 5.45677 5.67801 5.76618 6.21849 6.30982 6.57315 7.07106 7.26829 7.84185 8.02377 9.18054 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035853 B = 0.003215 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.784173 B = 8708.139104 C = 9063.571902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 H 0.078 0.922 4 C 0.067 3.933 5 O -0.397 6.397 6 C 0.059 3.941 7 C -0.147 4.147 8 C -0.102 4.102 9 H 0.117 0.883 10 C 0.519 3.481 11 O -0.574 6.574 12 N -0.700 5.700 13 C 0.133 3.867 14 H 0.092 0.908 15 C -0.174 4.174 16 C 0.155 3.845 17 H 0.081 0.919 18 N -0.742 5.742 19 C -0.234 4.234 20 H 0.059 0.941 21 C -0.065 4.065 22 N -0.984 5.984 23 Si 0.954 3.046 24 H -0.282 1.282 25 H -0.297 1.297 26 H -0.248 1.248 27 C -0.142 4.142 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.412 0.588 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.367 0.633 41 H 0.257 0.743 42 H 0.089 0.911 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.565 -2.001 24.077 25.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 H 0.096 0.904 4 C -0.009 4.009 5 O -0.316 6.316 6 C -0.017 4.017 7 C -0.185 4.185 8 C -0.123 4.123 9 H 0.135 0.865 10 C 0.307 3.693 11 O -0.454 6.454 12 N -0.351 5.351 13 C 0.026 3.974 14 H 0.110 0.890 15 C -0.216 4.216 16 C 0.046 3.954 17 H 0.099 0.901 18 N -0.383 5.383 19 C -0.365 4.365 20 H 0.077 0.923 21 C -0.256 4.256 22 N -0.634 5.634 23 Si 0.781 3.219 24 H -0.208 1.208 25 H -0.224 1.224 26 H -0.172 1.172 27 C -0.182 4.182 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.085 0.915 34 H 0.127 0.873 35 H 0.116 0.884 36 H 0.090 0.910 37 H 0.249 0.751 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.200 0.800 41 H 0.066 0.934 42 H 0.108 0.892 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.866 -1.425 24.241 25.851 hybrid contribution 0.051 0.370 -1.574 1.617 sum -8.815 -1.056 22.667 24.344 Atomic orbital electron populations 1.21863 0.94846 1.01709 1.01895 1.21537 0.97147 0.99827 0.93993 0.90371 1.22717 0.99158 0.81721 0.97315 1.87920 1.74655 1.22946 1.46094 1.22718 0.99029 0.95945 0.84022 1.22280 1.02570 0.93029 1.00649 1.21458 1.02501 0.96703 0.91638 0.86533 1.21030 0.78409 0.84768 0.85077 1.90644 1.44374 1.23647 1.86708 1.45686 1.58660 1.24862 1.05869 1.21503 0.96218 0.95845 0.83813 0.88986 1.24165 0.98824 1.00109 0.98517 1.21946 0.96145 0.95125 0.82183 0.90100 1.42759 1.11783 1.80548 1.03209 1.19113 0.90888 1.35828 0.90665 0.92277 1.25519 0.99689 1.02532 0.97889 1.69881 1.27080 1.56838 1.09643 0.85427 0.80492 0.77882 0.78092 1.20844 1.22382 1.17220 1.23707 0.97695 1.00238 0.96547 0.92334 0.93091 0.92615 0.91628 0.87798 0.91513 0.87252 0.88443 0.91030 0.75074 0.90425 0.92855 0.79965 0.93379 0.89225 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.40 71.98 0.60 -2.31 16 2 C -0.11 -1.82 2.39 -10.70 -0.03 -1.84 16 3 H 0.08 1.49 8.08 -2.39 -0.02 1.47 16 4 C 0.07 0.92 6.25 72.02 0.45 1.37 16 5 O -0.40 -6.37 10.30 -148.98 -1.53 -7.90 16 6 C 0.06 0.67 6.84 72.01 0.49 1.17 16 7 C -0.15 -1.84 4.81 30.69 0.15 -1.69 16 8 C -0.10 -1.66 2.46 -11.42 -0.03 -1.68 16 9 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 10 C 0.52 12.07 6.80 87.65 0.60 12.66 16 11 O -0.57 -17.84 13.60 -3.03 -0.04 -17.88 16 12 N -0.70 -15.02 5.10 -440.04 -2.25 -17.26 16 13 C 0.13 3.44 4.33 45.52 0.20 3.63 16 14 H 0.09 2.57 7.46 -2.39 -0.02 2.55 16 15 C -0.17 -5.53 7.68 31.12 0.24 -5.29 16 16 C 0.16 5.32 4.35 45.52 0.20 5.51 16 17 H 0.08 2.76 8.10 -2.39 -0.02 2.74 16 18 N -0.74 -33.01 5.21 -320.45 -1.67 -34.68 16 19 C -0.23 -12.96 10.45 84.03 0.88 -12.09 16 20 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 21 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16 22 N -0.98 -62.44 13.97 21.65 0.30 -62.14 16 23 Si 0.95 44.72 27.74 68.60 1.90 46.62 16 24 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 25 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 26 H -0.25 -10.31 6.52 99.48 0.65 -9.66 16 27 C -0.14 -3.68 7.58 31.12 0.24 -3.45 16 28 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.05 1.29 5.87 -2.39 -0.01 1.27 16 30 H 0.05 1.09 6.03 -2.39 -0.01 1.08 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 34 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.10 0.87 7.18 -2.39 -0.02 0.85 16 36 H 0.07 1.07 6.50 -2.39 -0.02 1.06 16 37 H 0.41 6.88 7.59 -92.71 -0.70 6.18 16 38 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 39 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.37 15.68 5.79 -92.71 -0.54 15.14 16 41 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 42 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.09 2.42 8.12 -2.39 -0.02 2.40 16 Total: -1.00 -71.60 334.84 0.88 -70.71 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: -0.28 Total: 29.84 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 4.45 Total: -7.30 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -3.61 Total: -114.08 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -1.58 Total: -25.79 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.90 Total: 46.62 kcal Total: -71.60 0.88 -70.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020558751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.736 kcal (2) G-P(sol) polarization free energy of solvation -71.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds