Wall clock time and date at job start Tue Mar 31 2020 07:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09005 * 109.57375 * 2 1 4 4 C 1.53283 * 109.64328 * 239.79531 * 2 1 3 5 5 O 1.42905 * 109.45924 * 182.52769 * 4 2 1 6 6 C 1.42906 * 114.10059 * 61.16038 * 5 4 2 7 7 C 1.53101 * 109.41092 * 298.83817 * 6 5 4 8 8 C 1.53176 * 109.16319 * 57.60966 * 7 6 5 9 9 H 1.08995 * 109.54360 * 183.06550 * 8 7 6 10 10 C 1.50702 * 109.54335 * 62.88520 * 8 7 6 11 11 O 1.21280 * 120.00090 * 261.85825 * 10 8 7 12 12 N 1.34774 * 119.99609 * 81.58814 * 10 8 7 13 13 C 1.46506 * 119.99651 * 180.27310 * 12 10 8 14 14 H 1.08998 * 112.85274 * 336.19821 * 13 12 10 15 15 C 1.53783 * 113.61060 * 107.50079 * 13 12 10 16 16 C 1.53787 * 87.08081 * 89.11751 * 15 13 12 17 17 H 1.08994 * 113.68802 * 270.87443 * 16 15 13 18 18 N 1.46491 * 113.61619 * 139.97875 * 16 15 13 19 19 C 1.36938 * 120.00377 * 107.50098 * 18 16 15 20 20 H 1.08001 * 119.99427 * 0.02562 * 19 18 16 21 21 C 1.38804 * 120.00487 * 179.97438 * 19 18 16 22 22 N 1.31621 * 120.00007 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00172 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46983 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47436 * 120.00261 * 23 21 19 26 26 H 1.48508 * 109.46955 * 240.00337 * 23 21 19 27 27 C 1.53777 * 113.61531 * 204.99648 * 13 12 10 28 28 H 1.08994 * 109.47506 * 303.20815 * 1 2 3 29 29 H 1.09001 * 109.47474 * 63.20995 * 1 2 3 30 30 H 1.09003 * 109.46954 * 183.20271 * 1 2 3 31 31 H 1.08989 * 109.46196 * 62.52961 * 4 2 1 32 32 H 1.09001 * 109.46588 * 302.52336 * 4 2 1 33 33 H 1.08994 * 109.48375 * 178.85921 * 6 5 4 34 34 H 1.08994 * 109.49499 * 58.82185 * 6 5 4 35 35 H 1.09001 * 109.51912 * 297.70700 * 7 6 5 36 36 H 1.09001 * 109.52298 * 177.51315 * 7 6 5 37 37 H 0.96996 * 120.00289 * 0.27356 * 12 10 8 38 38 H 1.09000 * 113.61075 * 203.66201 * 15 13 12 39 39 H 1.08996 * 113.61717 * 334.56638 * 15 13 12 40 40 H 0.97003 * 120.00158 * 287.50645 * 18 16 15 41 41 H 0.96997 * 120.00197 * 179.97438 * 22 21 19 42 42 H 1.09002 * 113.61239 * 25.43504 * 27 13 12 43 43 H 1.08999 * 113.61486 * 156.25089 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0452 -0.7263 -1.2476 5 8 3.4730 -0.7755 -1.2142 6 6 4.0063 -1.4822 -0.0924 7 6 3.5716 -0.7870 1.2005 8 6 2.0419 -0.7252 1.2484 9 1 1.7265 -0.1833 2.1399 10 6 1.4817 -2.1238 1.2841 11 8 1.0853 -2.6446 0.2630 12 7 1.4264 -2.7980 2.4498 13 6 0.8874 -4.1598 2.4835 14 1 0.2091 -4.3672 1.6559 15 6 1.9605 -5.2421 2.6889 16 6 1.7417 -5.0610 4.2003 17 1 2.3756 -4.2945 4.6458 18 7 1.7575 -6.3191 4.9505 19 6 2.8242 -6.6244 5.7531 20 1 3.6536 -5.9373 5.8334 21 6 2.8390 -7.8163 6.4644 22 7 1.8280 -8.6534 6.3670 23 14 4.2938 -8.2322 7.5598 24 1 5.2918 -7.1346 7.4953 25 1 3.8280 -8.3967 8.9602 26 1 4.9185 -9.4966 7.0942 27 6 0.3267 -4.5666 3.8564 28 1 -0.3634 0.5628 0.8598 29 1 -0.3634 0.4632 -0.9173 30 1 -0.3633 -1.0261 0.0574 31 1 1.7208 -0.1905 -2.1396 32 1 1.6469 -1.7407 -1.2679 33 1 5.0946 -1.4909 -0.1522 34 1 3.6338 -2.5065 -0.0972 35 1 3.9779 0.2242 1.2246 36 1 3.9405 -1.3494 2.0583 37 1 1.7435 -2.3815 3.2664 38 1 1.6661 -6.2245 2.3197 39 1 2.9530 -4.9423 2.3524 40 1 1.0125 -6.9361 4.8786 41 1 1.8385 -9.4864 6.8637 42 1 0.0001 -3.7215 4.4625 43 1 -0.4155 -5.3633 3.8063 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020558752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:13 Heat of formation + Delta-G solvation = -57.872844 kcal Electronic energy + Delta-G solvation = -22978.976159 eV Core-core repulsion = 19638.799394 eV Total energy + Delta-G solvation = -3340.176764 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.99414 -39.02474 -37.52653 -34.44960 -34.15442 -32.95062 -31.95428 -29.89730 -27.20582 -25.83399 -25.17146 -24.47661 -22.71756 -22.45273 -21.59811 -19.81489 -18.97423 -17.18584 -16.99239 -16.30724 -16.22091 -15.63204 -15.50235 -14.96302 -14.63414 -14.41318 -14.02116 -13.79187 -13.61564 -13.14111 -12.79978 -12.64999 -12.55661 -12.19379 -12.12701 -11.90643 -11.77575 -11.54220 -11.23350 -10.95509 -10.84227 -10.82153 -10.66815 -10.35496 -10.22214 -9.95296 -9.79524 -9.60124 -9.11338 -8.95717 -8.82429 -7.02497 -5.83943 -3.13236 2.56897 3.15048 3.38739 3.44388 3.46730 3.82366 4.32328 4.48585 4.51674 4.54097 4.72957 4.90538 5.01652 5.10073 5.16490 5.25811 5.32384 5.39536 5.42376 5.45475 5.49472 5.51951 5.64193 5.73796 5.79657 5.82473 5.85599 5.91890 6.00228 6.07509 6.20438 6.22850 6.28124 6.49382 6.58105 6.65336 7.03565 7.14216 7.54131 7.63711 8.24497 8.34357 9.45744 10.02831 10.37033 11.38414 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030131 B = 0.003442 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.054519 B = 8132.760772 C = 8608.963384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.103 4.103 3 H 0.080 0.920 4 C 0.043 3.957 5 O -0.385 6.385 6 C 0.058 3.942 7 C -0.145 4.145 8 C -0.109 4.109 9 H 0.095 0.905 10 C 0.521 3.479 11 O -0.536 6.536 12 N -0.704 5.704 13 C 0.114 3.886 14 H 0.095 0.905 15 C -0.175 4.175 16 C 0.167 3.833 17 H 0.073 0.927 18 N -0.712 5.712 19 C -0.246 4.246 20 H 0.071 0.929 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.159 4.159 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.400 0.600 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.063 0.937 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.968 18.684 -11.055 21.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.122 4.122 3 H 0.098 0.902 4 C -0.033 4.033 5 O -0.304 6.304 6 C -0.019 4.019 7 C -0.183 4.183 8 C -0.130 4.130 9 H 0.113 0.887 10 C 0.307 3.693 11 O -0.414 6.414 12 N -0.354 5.354 13 C 0.009 3.991 14 H 0.114 0.886 15 C -0.217 4.217 16 C 0.055 3.945 17 H 0.091 0.909 18 N -0.350 5.350 19 C -0.377 4.377 20 H 0.089 0.911 21 C -0.208 4.208 22 N -0.579 5.579 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.199 4.199 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.234 0.766 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.979 18.343 -11.778 21.821 hybrid contribution 0.523 -0.386 1.364 1.511 sum -0.456 17.957 -10.413 20.763 Atomic orbital electron populations 1.21868 0.94162 1.03395 1.01639 1.21580 0.96676 0.99398 0.94571 0.90181 1.23204 0.80532 1.03218 0.96370 1.87870 1.21022 1.76257 1.45220 1.22561 0.98987 0.95212 0.85153 1.22156 0.93288 1.03076 0.99759 1.21462 0.96826 0.93869 1.00863 0.88720 1.20522 0.77886 0.87403 0.83462 1.90552 1.48410 1.69935 1.32542 1.45807 1.63584 1.15859 1.10139 1.21835 0.97251 0.80990 0.99020 0.88649 1.24296 0.97753 0.97964 1.01724 1.21607 0.93148 0.89942 0.89814 0.90922 1.42410 1.22737 1.18009 1.51869 1.19329 0.97528 1.02134 1.18703 0.91075 1.24771 0.98071 0.97213 1.00749 1.69667 1.31030 1.11365 1.45843 0.86122 0.81829 0.77984 0.80265 1.20523 1.21802 1.21786 1.23858 1.00267 1.00989 0.94820 0.92789 0.92386 0.91004 0.89807 0.88565 0.88835 0.92692 0.89886 0.90126 0.76594 0.89619 0.92512 0.78005 0.93436 0.91820 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.93 37.15 0.33 -1.09 16 2 C -0.10 -0.99 2.68 -90.38 -0.24 -1.24 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 4 C 0.04 0.49 5.85 37.30 0.22 0.71 16 5 O -0.39 -4.83 10.77 -35.23 -0.38 -5.21 16 6 C 0.06 0.63 6.60 37.21 0.25 0.88 16 7 C -0.14 -1.30 5.63 -26.59 -0.15 -1.44 16 8 C -0.11 -1.03 2.60 -91.58 -0.24 -1.27 16 9 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 10 C 0.52 6.35 5.21 -10.99 -0.06 6.30 16 11 O -0.54 -8.10 11.18 5.56 0.06 -8.03 16 12 N -0.70 -8.39 5.26 -53.01 -0.28 -8.67 16 13 C 0.11 1.64 4.32 -67.12 -0.29 1.35 16 14 H 0.10 1.45 7.46 -51.93 -0.39 1.07 16 15 C -0.18 -2.98 7.68 -25.91 -0.20 -3.18 16 16 C 0.17 3.10 4.36 -67.12 -0.29 2.81 16 17 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 18 N -0.71 -17.30 5.40 -52.64 -0.28 -17.58 16 19 C -0.25 -6.66 9.97 -15.06 -0.15 -6.81 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -27.69 13.06 55.49 0.72 -26.96 16 23 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 C -0.16 -2.43 7.58 -25.92 -0.20 -2.63 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.82 6.01 -51.93 -0.31 0.51 16 31 H 0.08 0.84 8.14 -51.94 -0.42 0.42 16 32 H 0.10 1.31 5.19 -51.93 -0.27 1.04 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.70 7.13 -51.93 -0.37 0.33 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.40 3.97 8.70 -40.82 -0.36 3.61 16 38 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.39 9.98 7.93 -40.82 -0.32 9.66 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.09 1.44 8.12 -51.93 -0.42 1.02 16 LS Contribution 337.79 15.07 5.09 5.09 Total: -1.00 -31.01 337.79 -8.26 -39.27 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -7.06 Total: 11.19 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -1.12 Total: -6.03 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.16 Total: -53.22 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.32 Total: -13.24 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.01 -8.26 -39.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020558752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.603 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds