Wall clock time and date at job start Tue Mar 31 2020 07:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09005 * 109.57375 * 2 1 4 4 C 1.53283 * 109.64328 * 239.79531 * 2 1 3 5 5 O 1.42905 * 109.45924 * 182.52769 * 4 2 1 6 6 C 1.42906 * 114.10059 * 61.16038 * 5 4 2 7 7 C 1.53101 * 109.41092 * 298.83817 * 6 5 4 8 8 C 1.53176 * 109.16319 * 57.60966 * 7 6 5 9 9 H 1.08995 * 109.54360 * 183.06550 * 8 7 6 10 10 C 1.50702 * 109.54335 * 62.88520 * 8 7 6 11 11 O 1.21280 * 120.00090 * 261.85825 * 10 8 7 12 12 N 1.34774 * 119.99609 * 81.58814 * 10 8 7 13 13 C 1.46506 * 119.99651 * 180.27310 * 12 10 8 14 14 H 1.08998 * 112.85274 * 336.19821 * 13 12 10 15 15 C 1.53783 * 113.61060 * 107.50079 * 13 12 10 16 16 C 1.53787 * 87.08081 * 89.11751 * 15 13 12 17 17 H 1.08994 * 113.68802 * 270.87443 * 16 15 13 18 18 N 1.46491 * 113.61619 * 139.97875 * 16 15 13 19 19 C 1.36938 * 120.00377 * 107.50098 * 18 16 15 20 20 H 1.08001 * 119.99427 * 0.02562 * 19 18 16 21 21 C 1.38804 * 120.00487 * 179.97438 * 19 18 16 22 22 N 1.31621 * 120.00007 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00172 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46983 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47436 * 120.00261 * 23 21 19 26 26 H 1.48508 * 109.46955 * 240.00337 * 23 21 19 27 27 C 1.53777 * 113.61531 * 204.99648 * 13 12 10 28 28 H 1.08994 * 109.47506 * 303.20815 * 1 2 3 29 29 H 1.09001 * 109.47474 * 63.20995 * 1 2 3 30 30 H 1.09003 * 109.46954 * 183.20271 * 1 2 3 31 31 H 1.08989 * 109.46196 * 62.52961 * 4 2 1 32 32 H 1.09001 * 109.46588 * 302.52336 * 4 2 1 33 33 H 1.08994 * 109.48375 * 178.85921 * 6 5 4 34 34 H 1.08994 * 109.49499 * 58.82185 * 6 5 4 35 35 H 1.09001 * 109.51912 * 297.70700 * 7 6 5 36 36 H 1.09001 * 109.52298 * 177.51315 * 7 6 5 37 37 H 0.96996 * 120.00289 * 0.27356 * 12 10 8 38 38 H 1.09000 * 113.61075 * 203.66201 * 15 13 12 39 39 H 1.08996 * 113.61717 * 334.56638 * 15 13 12 40 40 H 0.97003 * 120.00158 * 287.50645 * 18 16 15 41 41 H 0.96997 * 120.00197 * 179.97438 * 22 21 19 42 42 H 1.09002 * 113.61239 * 25.43504 * 27 13 12 43 43 H 1.08999 * 113.61486 * 156.25089 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0452 -0.7263 -1.2476 5 8 3.4730 -0.7755 -1.2142 6 6 4.0063 -1.4822 -0.0924 7 6 3.5716 -0.7870 1.2005 8 6 2.0419 -0.7252 1.2484 9 1 1.7265 -0.1833 2.1399 10 6 1.4817 -2.1238 1.2841 11 8 1.0853 -2.6446 0.2630 12 7 1.4264 -2.7980 2.4498 13 6 0.8874 -4.1598 2.4835 14 1 0.2091 -4.3672 1.6559 15 6 1.9605 -5.2421 2.6889 16 6 1.7417 -5.0610 4.2003 17 1 2.3756 -4.2945 4.6458 18 7 1.7575 -6.3191 4.9505 19 6 2.8242 -6.6244 5.7531 20 1 3.6536 -5.9373 5.8334 21 6 2.8390 -7.8163 6.4644 22 7 1.8280 -8.6534 6.3670 23 14 4.2938 -8.2322 7.5598 24 1 5.2918 -7.1346 7.4953 25 1 3.8280 -8.3967 8.9602 26 1 4.9185 -9.4966 7.0942 27 6 0.3267 -4.5666 3.8564 28 1 -0.3634 0.5628 0.8598 29 1 -0.3634 0.4632 -0.9173 30 1 -0.3633 -1.0261 0.0574 31 1 1.7208 -0.1905 -2.1396 32 1 1.6469 -1.7407 -1.2679 33 1 5.0946 -1.4909 -0.1522 34 1 3.6338 -2.5065 -0.0972 35 1 3.9779 0.2242 1.2246 36 1 3.9405 -1.3494 2.0583 37 1 1.7435 -2.3815 3.2664 38 1 1.6661 -6.2245 2.3197 39 1 2.9530 -4.9423 2.3524 40 1 1.0125 -6.9361 4.8786 41 1 1.8385 -9.4864 6.8637 42 1 0.0001 -3.7215 4.4625 43 1 -0.4155 -5.3633 3.8063 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020558752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:13 Heat of formation + Delta-G solvation = -79.486227 kcal Electronic energy + Delta-G solvation = -22979.913385 eV Core-core repulsion = 19638.799394 eV Total energy + Delta-G solvation = -3341.113991 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.93308 -40.22388 -38.62782 -35.79880 -35.27742 -34.26979 -32.94524 -31.70971 -28.02493 -26.88302 -26.53146 -26.10696 -24.05772 -23.35758 -22.67168 -20.75094 -20.34800 -19.11776 -17.97183 -17.21621 -17.13914 -16.85678 -16.64482 -16.30206 -15.79847 -15.59251 -15.34760 -15.19505 -14.67447 -14.33707 -14.00028 -13.68018 -13.44234 -13.33512 -13.32462 -13.27277 -12.90282 -12.84979 -12.61305 -12.41400 -12.10921 -12.00058 -11.86446 -11.73412 -11.60527 -11.53427 -11.19267 -10.85685 -10.65570 -10.04816 -9.98184 -8.99369 -7.95330 -5.23919 1.48000 1.48656 1.58366 1.61952 2.16380 2.56346 2.98813 3.36652 3.54873 3.68538 3.72100 3.75309 3.87203 3.95873 3.97100 4.16050 4.31659 4.32685 4.32881 4.51096 4.57592 4.69090 4.73168 4.74040 4.78657 4.87063 4.90458 4.91805 4.99074 5.08275 5.12901 5.13354 5.20666 5.22524 5.30054 5.44647 5.51716 5.74931 6.26937 6.27535 6.59799 7.30648 7.33104 8.09740 8.31683 9.28255 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030131 B = 0.003442 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.054519 B = 8132.760772 C = 8608.963384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 H 0.100 0.900 4 C 0.040 3.960 5 O -0.400 6.400 6 C 0.052 3.948 7 C -0.139 4.139 8 C -0.105 4.105 9 H 0.126 0.874 10 C 0.518 3.482 11 O -0.567 6.567 12 N -0.697 5.697 13 C 0.136 3.864 14 H 0.088 0.912 15 C -0.172 4.172 16 C 0.154 3.846 17 H 0.084 0.916 18 N -0.728 5.728 19 C -0.242 4.242 20 H 0.080 0.920 21 C -0.077 4.077 22 N -0.971 5.971 23 Si 0.971 3.029 24 H -0.263 1.263 25 H -0.294 1.294 26 H -0.297 1.297 27 C -0.143 4.143 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.027 0.973 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.413 0.587 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.373 0.627 41 H 0.250 0.750 42 H 0.086 0.914 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.208 21.542 -10.494 23.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.119 4.119 3 H 0.118 0.882 4 C -0.036 4.036 5 O -0.319 6.319 6 C -0.025 4.025 7 C -0.177 4.177 8 C -0.126 4.126 9 H 0.144 0.856 10 C 0.306 3.694 11 O -0.447 6.447 12 N -0.348 5.348 13 C 0.029 3.971 14 H 0.106 0.894 15 C -0.214 4.214 16 C 0.044 3.956 17 H 0.102 0.898 18 N -0.366 5.366 19 C -0.374 4.374 20 H 0.098 0.902 21 C -0.269 4.269 22 N -0.621 5.621 23 Si 0.800 3.200 24 H -0.187 1.187 25 H -0.221 1.221 26 H -0.224 1.224 27 C -0.183 4.183 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.125 0.875 34 H 0.046 0.954 35 H 0.122 0.878 36 H 0.109 0.891 37 H 0.250 0.750 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.205 0.795 41 H 0.059 0.941 42 H 0.105 0.895 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.200 21.275 -11.231 24.059 hybrid contribution 0.286 -1.227 1.064 1.649 sum 0.085 20.048 -10.167 22.479 Atomic orbital electron populations 1.21826 0.93942 1.02061 1.02861 1.21583 0.96792 0.99979 0.93521 0.88223 1.23206 0.80139 1.02184 0.98119 1.87845 1.21544 1.76311 1.46218 1.22671 0.99719 0.94007 0.86098 1.22159 0.92786 1.04111 0.98644 1.21544 0.97037 0.91872 1.02128 0.85637 1.21121 0.77103 0.88407 0.82730 1.90569 1.49578 1.70869 1.33690 1.45707 1.63469 1.14689 1.10957 1.21452 0.95678 0.81691 0.98234 0.89396 1.24135 0.98635 0.98227 1.00416 1.21958 0.95783 0.88181 0.89645 0.89773 1.42622 1.21771 1.19770 1.52399 1.19750 0.98081 1.01835 1.17762 0.90246 1.25567 1.00743 0.97618 1.02956 1.69820 1.33135 1.11779 1.47414 0.85106 0.79124 0.77672 0.78065 1.18742 1.22081 1.22450 1.23664 0.97998 1.01353 0.95264 0.91132 0.91609 0.93572 0.88894 0.91270 0.87483 0.95416 0.87783 0.89094 0.75024 0.91575 0.92663 0.79460 0.94072 0.89499 0.89810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.93 71.98 0.64 -1.80 16 2 C -0.10 -1.66 2.68 -10.64 -0.03 -1.69 16 3 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 4 C 0.04 0.87 5.85 72.08 0.42 1.29 16 5 O -0.40 -9.62 10.77 -148.98 -1.60 -11.22 16 6 C 0.05 1.07 6.60 72.02 0.48 1.54 16 7 C -0.14 -2.06 5.63 30.69 0.17 -1.88 16 8 C -0.10 -1.66 2.60 -11.42 -0.03 -1.69 16 9 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 10 C 0.52 11.78 5.21 87.66 0.46 12.23 16 11 O -0.57 -17.04 11.18 -3.03 -0.03 -17.07 16 12 N -0.70 -15.09 5.26 -440.03 -2.32 -17.40 16 13 C 0.14 3.75 4.32 45.52 0.20 3.95 16 14 H 0.09 2.64 7.46 -2.39 -0.02 2.63 16 15 C -0.17 -5.81 7.68 31.12 0.24 -5.57 16 16 C 0.15 5.56 4.36 45.52 0.20 5.76 16 17 H 0.08 2.85 8.10 -2.39 -0.02 2.83 16 18 N -0.73 -35.44 5.40 -320.47 -1.73 -37.17 16 19 C -0.24 -13.05 9.97 84.03 0.84 -12.21 16 20 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 21 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 22 N -0.97 -58.85 13.06 21.65 0.28 -58.57 16 23 Si 0.97 45.25 29.55 68.60 2.03 47.28 16 24 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 26 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 27 C -0.14 -4.15 7.58 31.12 0.24 -3.92 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 1.01 6.01 -2.39 -0.01 0.99 16 31 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.07 1.93 5.19 -2.39 -0.01 1.91 16 33 H 0.11 1.84 8.14 -2.39 -0.02 1.83 16 34 H 0.03 0.71 7.13 -2.39 -0.02 0.69 16 35 H 0.10 1.17 8.14 -2.39 -0.02 1.16 16 36 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.41 6.82 8.70 -92.71 -0.81 6.01 16 38 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.37 19.73 7.93 -92.71 -0.73 19.00 16 41 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 42 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.08 2.60 8.12 -2.39 -0.02 2.58 16 Total: -1.00 -67.95 337.79 0.38 -67.57 By element: Atomic # 1 Polarization: 34.97 SS G_CDS: -0.53 Total: 34.44 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 4.29 Total: -7.85 kcal Atomic # 7 Polarization: -109.38 SS G_CDS: -3.76 Total: -113.15 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -1.64 Total: -28.29 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -67.95 0.38 -67.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020558752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.915 kcal (2) G-P(sol) polarization free energy of solvation -67.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds