Wall clock time and date at job start Tue Mar 31 2020 07:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.46062 * 2 1 4 4 C 1.54516 * 110.62432 * 237.31610 * 2 1 3 5 5 C 1.54482 * 104.06060 * 241.29642 * 4 2 1 6 6 O 1.44420 * 104.80341 * 23.98456 * 5 4 2 7 7 C 1.44422 * 105.27502 * 319.48359 * 6 5 4 8 8 H 1.09001 * 110.46849 * 281.63555 * 7 6 5 9 9 C 1.50702 * 110.37455 * 159.34530 * 7 6 5 10 10 O 1.21279 * 119.99848 * 359.62159 * 9 7 6 11 11 N 1.34776 * 119.99890 * 179.61636 * 9 7 6 12 12 C 1.46498 * 119.99729 * 179.97438 * 11 9 7 13 13 C 1.53006 * 109.47078 * 184.92153 * 12 11 9 14 14 H 1.09003 * 109.87180 * 303.57728 * 13 12 11 15 15 C 1.54319 * 109.87967 * 64.59517 * 13 12 11 16 16 C 1.55157 * 102.94312 * 141.76613 * 15 13 12 17 17 C 1.54909 * 101.57858 * 324.49305 * 16 15 13 18 18 N 1.47186 * 109.92181 * 182.45301 * 13 12 11 19 19 C 1.36935 * 125.73567 * 61.57890 * 18 13 12 20 20 H 1.08006 * 120.00326 * 13.44239 * 19 18 13 21 21 C 1.38812 * 120.00109 * 193.43964 * 19 18 13 22 22 N 1.31614 * 119.99784 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99994 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47155 * 90.00334 * 23 21 19 25 25 H 1.48501 * 109.47181 * 210.00214 * 23 21 19 26 26 H 1.48499 * 109.47397 * 330.00299 * 23 21 19 27 27 H 1.09001 * 109.46377 * 297.39543 * 1 2 3 28 28 H 1.08997 * 109.46748 * 57.39428 * 1 2 3 29 29 H 1.08995 * 109.46897 * 177.39416 * 1 2 3 30 30 H 1.08997 * 110.51315 * 359.94630 * 4 2 1 31 31 H 1.08997 * 110.50787 * 122.52005 * 4 2 1 32 32 H 1.09008 * 110.36813 * 142.80840 * 5 4 2 33 33 H 1.08996 * 110.37735 * 265.03415 * 5 4 2 34 34 H 0.97000 * 120.00312 * 0.02562 * 11 9 7 35 35 H 1.09000 * 109.47097 * 64.92740 * 12 11 9 36 36 H 1.09000 * 109.47686 * 304.92569 * 12 11 9 37 37 H 1.09000 * 110.72139 * 23.39840 * 15 13 12 38 38 H 1.09004 * 110.87433 * 260.19766 * 15 13 12 39 39 H 1.09000 * 111.00670 * 206.42660 * 16 15 13 40 40 H 1.09002 * 111.03816 * 82.58245 * 16 15 13 41 41 H 1.09007 * 110.36751 * 155.84968 * 17 16 15 42 42 H 1.08995 * 110.37089 * 278.05711 * 17 16 15 43 43 H 0.97008 * 120.00078 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 6 2.0743 -0.7809 -1.2172 5 6 2.8801 -1.9400 -0.5896 6 8 2.3101 -2.1160 0.7256 7 6 2.0713 -0.7798 1.2187 8 1 3.0001 -0.3327 1.5732 9 6 1.0466 -0.8035 2.3235 10 8 0.5493 -1.8551 2.6667 11 7 0.6830 0.3437 2.9302 12 6 -0.3135 0.3207 4.0038 13 6 -0.6339 1.7539 4.4331 14 1 0.2815 2.2642 4.7329 15 6 -1.3012 2.5141 3.2677 16 6 -2.3717 3.3787 3.9845 17 6 -2.8204 2.4338 5.1272 18 7 -1.5906 1.7404 5.5516 19 6 -1.3745 1.1799 6.7821 20 1 -0.3764 0.8899 7.0758 21 6 -2.4382 0.9846 7.6523 22 7 -3.6546 1.3376 7.2944 23 14 -2.1435 0.2195 9.3307 24 1 -1.8548 1.2898 10.3189 25 1 -3.3541 -0.5301 9.7525 26 1 -0.9874 -0.7095 9.2552 27 1 -0.3632 0.4729 0.9125 28 1 -0.3633 0.5538 -0.8657 29 1 -0.3633 -1.0266 -0.0467 30 1 1.2534 -1.1689 -1.8202 31 1 2.7225 -0.1450 -1.8201 32 1 2.7601 -2.8486 -1.1798 33 1 3.9342 -1.6729 -0.5156 34 1 1.0806 1.1848 2.6555 35 1 0.0821 -0.2337 4.8548 36 1 -1.2223 -0.1631 3.6458 37 1 -1.7700 1.8184 2.5717 38 1 -0.5782 3.1455 2.7513 39 1 -3.2025 3.6053 3.3162 40 1 -1.9331 4.2933 4.3834 41 1 -3.2360 3.0094 5.9543 42 1 -3.5534 1.7156 4.7598 43 1 -4.3980 1.2008 7.9023 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028142988.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:53 Heat of formation + Delta-G solvation = -60.647090 kcal Electronic energy + Delta-G solvation = -23226.446244 eV Core-core repulsion = 19886.149180 eV Total energy + Delta-G solvation = -3340.297065 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.52179 -38.53912 -37.44371 -34.45287 -33.46431 -32.47130 -30.52414 -29.53772 -28.60915 -26.97015 -24.92094 -24.01891 -22.80402 -21.35336 -20.33606 -19.86306 -19.39572 -17.33272 -16.95257 -16.56717 -16.05247 -15.47389 -15.02281 -14.82545 -14.50583 -14.10909 -13.88601 -13.73948 -13.37923 -13.00695 -12.77381 -12.61721 -12.10098 -11.90412 -11.75969 -11.66242 -11.42732 -11.30467 -11.12862 -11.00652 -10.95074 -10.77982 -10.25197 -10.11066 -10.04593 -9.93558 -9.83634 -9.71850 -9.39781 -8.65903 -8.56829 -6.85724 -5.76595 -3.13264 2.83211 3.08429 3.40387 3.46602 3.48393 3.95719 4.23210 4.46455 4.50676 4.60963 4.85698 4.89330 5.10719 5.18436 5.31775 5.34365 5.38906 5.43661 5.48144 5.49455 5.60879 5.68171 5.75132 5.78868 5.85173 6.03935 6.10899 6.15158 6.23574 6.44385 6.50487 6.55960 6.60882 6.69788 6.81323 7.05022 7.51408 7.59638 7.77566 7.79037 8.24930 8.49461 9.17061 9.77559 10.44340 11.35041 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024777 B = 0.004213 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.822076 B = 6644.803121 C = 7465.293526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.113 4.113 3 H 0.091 0.909 4 C -0.150 4.150 5 C 0.041 3.959 6 O -0.343 6.343 7 C 0.057 3.943 8 H 0.092 0.908 9 C 0.517 3.483 10 O -0.522 6.522 11 N -0.722 5.722 12 C 0.110 3.890 13 C 0.152 3.848 14 H 0.037 0.963 15 C -0.126 4.126 16 C -0.149 4.149 17 C 0.171 3.829 18 N -0.589 5.589 19 C -0.234 4.234 20 H 0.076 0.924 21 C -0.001 4.001 22 N -0.916 5.916 23 Si 0.911 3.089 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.279 1.279 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.395 0.605 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.025 0.975 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.109 2.247 -17.395 20.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.132 4.132 3 H 0.109 0.891 4 C -0.188 4.188 5 C -0.036 4.036 6 O -0.261 6.261 7 C -0.004 4.004 8 H 0.109 0.891 9 C 0.302 3.698 10 O -0.396 6.396 11 N -0.375 5.375 12 C -0.014 4.014 13 C 0.044 3.956 14 H 0.055 0.945 15 C -0.164 4.164 16 C -0.187 4.187 17 C 0.046 3.954 18 N -0.313 5.313 19 C -0.362 4.362 20 H 0.094 0.906 21 C -0.198 4.198 22 N -0.562 5.562 23 Si 0.741 3.259 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.228 0.772 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.043 0.957 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.526 1.195 -16.794 19.856 hybrid contribution 0.395 0.082 0.596 0.720 sum 10.921 1.277 -16.198 19.577 Atomic orbital electron populations 1.22044 0.93329 1.03078 1.03062 1.22476 0.97805 0.99692 0.93274 0.89059 1.23050 1.00617 0.97334 0.97798 1.23470 0.96740 0.99201 0.84221 1.89293 1.82720 1.23520 1.30540 1.23013 0.97815 0.85375 0.94207 0.89082 1.19995 0.82849 0.84453 0.82545 1.90740 1.54426 1.30525 1.63951 1.46096 1.44313 1.08607 1.38511 1.22243 0.90415 1.00619 0.88159 1.21147 0.93963 0.91668 0.88838 0.94499 1.22603 0.98342 0.98431 0.96998 1.23006 0.97743 0.98774 0.99203 1.21474 0.88137 0.92133 0.93612 1.44517 1.13427 1.64932 1.08443 1.18993 0.93407 1.34145 0.89683 0.90604 1.24891 0.95143 1.00589 0.99204 1.69935 0.98568 1.51786 1.35914 0.86141 0.77154 0.78953 0.83663 1.21535 1.21570 1.20500 0.90935 0.92023 0.91901 0.90201 0.90253 0.88795 0.92107 0.77186 0.91523 0.91554 0.91850 0.92410 0.92360 0.92306 0.90757 0.95704 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 8.11 37.16 0.30 -1.40 16 2 C -0.11 -1.04 3.61 -89.05 -0.32 -1.36 16 3 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 4 C -0.15 -1.15 6.74 -25.16 -0.17 -1.32 16 5 C 0.04 0.37 7.63 37.94 0.29 0.66 16 6 O -0.34 -4.87 10.91 -54.45 -0.59 -5.46 16 7 C 0.06 0.70 3.63 -27.11 -0.10 0.60 16 8 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 9 C 0.52 8.40 5.53 -10.98 -0.06 8.34 16 10 O -0.52 -11.26 16.55 -13.66 -0.23 -11.48 16 11 N -0.72 -10.61 4.08 -60.29 -0.25 -10.85 16 12 C 0.11 2.12 5.08 -4.04 -0.02 2.09 16 13 C 0.15 2.94 3.22 -66.86 -0.22 2.72 16 14 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 15 C -0.13 -2.01 6.10 -24.90 -0.15 -2.16 16 16 C -0.15 -2.66 7.09 -24.58 -0.17 -2.83 16 17 C 0.17 4.04 5.43 -2.53 -0.01 4.03 16 18 N -0.59 -14.49 3.13 -162.45 -0.51 -15.00 16 19 C -0.23 -6.40 9.78 -15.06 -0.15 -6.55 16 20 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 21 C 0.00 -0.03 5.47 -17.43 -0.10 -0.13 16 22 N -0.92 -26.64 10.53 55.49 0.58 -26.05 16 23 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H 0.07 0.88 6.10 -51.93 -0.32 0.56 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.62 7.74 -51.93 -0.40 0.21 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.39 4.43 8.33 -40.82 -0.34 4.09 16 35 H 0.07 1.47 7.93 -51.93 -0.41 1.05 16 36 H 0.07 1.43 8.08 -51.93 -0.42 1.01 16 37 H 0.06 1.00 7.81 -51.93 -0.41 0.60 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.07 1.96 6.85 -51.93 -0.36 1.60 16 42 H 0.02 0.64 8.08 -51.93 -0.42 0.22 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 340.10 15.07 5.13 5.13 Total: -1.00 -33.40 340.10 -9.03 -42.44 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.27 Total: 1.43 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -0.88 Total: 2.69 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -0.17 Total: -51.91 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.82 Total: -16.94 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.40 -9.03 -42.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028142988.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.211 kcal (2) G-P(sol) polarization free energy of solvation -33.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds