Wall clock time and date at job start Tue Mar 31 2020 07:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.54518 * 2 1 4 4 C 1.55137 * 110.52507 * 237.21658 * 2 1 3 5 5 C 1.54998 * 102.09051 * 220.39996 * 4 2 1 6 6 O 1.44376 * 103.49143 * 37.10762 * 5 4 2 7 7 C 1.43733 * 106.97743 * 319.93583 * 6 5 4 8 8 H 1.09004 * 109.88409 * 266.94290 * 7 6 5 9 9 C 1.50700 * 109.88036 * 145.94022 * 7 6 5 10 10 O 1.21284 * 119.99768 * 356.70583 * 9 7 6 11 11 N 1.34777 * 120.00112 * 176.71375 * 9 7 6 12 12 C 1.46498 * 119.99906 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.47118 * 184.62336 * 12 11 9 14 14 H 1.09001 * 109.87600 * 54.50588 * 13 12 11 15 15 C 1.54323 * 109.88183 * 293.32944 * 13 12 11 16 16 C 1.55156 * 102.94510 * 218.39190 * 15 13 12 17 17 C 1.54908 * 101.58100 * 35.49991 * 16 15 13 18 18 N 1.47025 * 109.88285 * 175.52090 * 13 12 11 19 19 C 1.36933 * 125.64729 * 298.08753 * 18 13 12 20 20 H 1.08003 * 120.00259 * 346.21064 * 19 18 13 21 21 C 1.38818 * 119.99677 * 166.20562 * 19 18 13 22 22 N 1.31618 * 120.00078 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99611 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47447 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46952 * 120.00384 * 23 21 19 26 26 H 1.48501 * 109.46628 * 239.99934 * 23 21 19 27 27 H 1.08999 * 109.47221 * 297.38112 * 1 2 3 28 28 H 1.09002 * 109.47060 * 57.38642 * 1 2 3 29 29 H 1.08998 * 109.47061 * 177.37995 * 1 2 3 30 30 H 1.09000 * 110.83498 * 102.23590 * 4 2 1 31 31 H 1.08999 * 111.00571 * 338.64243 * 4 2 1 32 32 H 1.09002 * 110.61967 * 278.60070 * 5 4 2 33 33 H 1.09005 * 110.75241 * 155.67682 * 5 4 2 34 34 H 0.97006 * 120.00151 * 359.97438 * 11 9 7 35 35 H 1.08994 * 109.47610 * 64.61753 * 12 11 9 36 36 H 1.09006 * 109.46830 * 304.61545 * 12 11 9 37 37 H 1.09008 * 110.71782 * 336.75328 * 15 13 12 38 38 H 1.08991 * 110.72260 * 99.84718 * 15 13 12 39 39 H 1.08998 * 111.00869 * 153.57127 * 16 15 13 40 40 H 1.09002 * 111.00375 * 277.42763 * 16 15 13 41 41 H 1.09004 * 110.36950 * 204.15846 * 17 16 15 42 42 H 1.08999 * 110.36994 * 81.83100 * 17 16 15 43 43 H 0.96998 * 119.99954 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0206 0.0000 4 6 2.0739 -0.7867 -1.2215 5 6 3.2687 -1.5580 -0.6050 6 8 2.7976 -1.9109 0.7133 7 6 2.0694 -0.7782 1.2159 8 1 2.7329 -0.1401 1.7996 9 6 0.9227 -1.2461 2.0745 10 8 0.7020 -2.4323 2.1976 11 7 0.1424 -0.3464 2.7055 12 6 -0.9719 -0.8013 3.5407 13 6 -1.7603 0.4099 4.0432 14 1 -2.0692 1.0270 3.1995 15 6 -0.8897 1.2375 5.0120 16 6 -1.9052 1.6837 6.0970 17 6 -2.8338 0.4467 6.1812 18 7 -2.9422 -0.0391 4.7935 19 6 -3.9755 -0.7805 4.2859 20 1 -4.0828 -0.8969 3.2175 21 6 -4.8850 -1.3826 5.1445 22 7 -4.7545 -1.2404 6.4465 23 14 -6.2942 -2.3947 4.4521 24 1 -6.2186 -2.3991 2.9691 25 1 -6.1981 -3.7878 4.9573 26 1 -7.5866 -1.8012 4.8795 27 1 -0.3633 0.4726 0.9125 28 1 -0.3633 0.5539 -0.8656 29 1 -0.3633 -1.0266 -0.0470 30 1 2.4121 -0.1053 -2.0022 31 1 1.3234 -1.4763 -1.6078 32 1 4.1473 -0.9163 -0.5397 33 1 3.4912 -2.4534 -1.1855 34 1 0.3191 0.6024 2.6073 35 1 -0.5835 -1.3606 4.3917 36 1 -1.6280 -1.4433 2.9528 37 1 -0.1051 0.6197 5.4490 38 1 -0.4606 2.1007 4.5034 39 1 -1.4060 1.8630 7.0492 40 1 -2.4582 2.5662 5.7752 41 1 -3.8147 0.7338 6.5603 42 1 -2.3894 -0.3187 6.8174 43 1 -5.3898 -1.6615 7.0465 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028142989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:58 Heat of formation + Delta-G solvation = -55.073957 kcal Electronic energy + Delta-G solvation = -23260.158476 eV Core-core repulsion = 19920.103080 eV Total energy + Delta-G solvation = -3340.055396 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.58766 -38.48889 -37.43295 -34.62550 -33.42262 -32.46093 -30.54048 -29.53270 -28.50382 -26.93593 -24.91758 -24.02131 -22.69295 -21.47887 -20.35271 -19.91147 -19.34527 -17.34646 -16.92471 -16.59631 -16.11143 -15.33590 -15.08107 -14.77085 -14.45608 -14.10262 -14.01555 -13.82787 -13.18155 -13.15070 -12.59157 -12.55534 -12.11344 -11.90984 -11.83912 -11.56300 -11.35798 -11.31705 -11.18595 -11.02324 -10.94320 -10.80909 -10.22664 -10.12266 -10.07330 -9.90178 -9.85052 -9.72020 -9.28865 -8.65105 -8.52888 -6.85073 -5.77150 -3.13713 2.84703 3.12376 3.39898 3.46587 3.48240 3.93482 4.20174 4.46916 4.49580 4.62700 4.85719 4.93714 5.13489 5.18465 5.32699 5.38225 5.39127 5.41802 5.49958 5.51266 5.61518 5.71515 5.75209 5.79586 5.86809 6.03212 6.11988 6.16886 6.22716 6.44824 6.53064 6.60963 6.61693 6.71017 6.81721 7.05628 7.51287 7.59901 7.78559 7.79046 8.24912 8.51468 9.16932 9.77545 10.44263 11.34749 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021123 B = 0.004394 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.245062 B = 6370.358201 C = 7071.743424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.115 4.115 3 H 0.092 0.908 4 C -0.150 4.150 5 C 0.043 3.957 6 O -0.347 6.347 7 C 0.060 3.940 8 H 0.091 0.909 9 C 0.512 3.488 10 O -0.522 6.522 11 N -0.722 5.722 12 C 0.109 3.891 13 C 0.153 3.847 14 H 0.037 0.963 15 C -0.128 4.128 16 C -0.148 4.148 17 C 0.171 3.829 18 N -0.589 5.589 19 C -0.233 4.233 20 H 0.076 0.924 21 C -0.001 4.001 22 N -0.915 5.915 23 Si 0.910 3.090 24 H -0.279 1.279 25 H -0.289 1.289 26 H -0.290 1.290 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.395 0.605 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.025 0.975 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.444 7.829 -11.635 20.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.134 4.134 3 H 0.110 0.890 4 C -0.188 4.188 5 C -0.033 4.033 6 O -0.265 6.265 7 C -0.002 4.002 8 H 0.108 0.892 9 C 0.297 3.703 10 O -0.397 6.397 11 N -0.377 5.377 12 C -0.015 4.015 13 C 0.044 3.956 14 H 0.055 0.945 15 C -0.166 4.166 16 C -0.187 4.187 17 C 0.047 3.953 18 N -0.313 5.313 19 C -0.362 4.362 20 H 0.094 0.906 21 C -0.198 4.198 22 N -0.561 5.561 23 Si 0.740 3.260 24 H -0.204 1.204 25 H -0.216 1.216 26 H -0.217 1.217 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.230 0.770 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.043 0.957 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.091 6.611 -11.316 19.243 hybrid contribution -0.593 0.000 -0.453 0.747 sum 13.497 6.612 -11.769 19.089 Atomic orbital electron populations 1.22244 0.93086 1.03253 1.03455 1.22551 0.97885 0.99654 0.93309 0.88984 1.23303 0.98475 0.99446 0.97577 1.23611 0.95967 0.99976 0.83776 1.89021 1.70563 1.35919 1.30968 1.22786 0.93088 0.88632 0.95648 0.89163 1.20229 0.83173 0.86754 0.80164 1.90733 1.70615 1.16503 1.61887 1.46272 1.32261 1.09192 1.49946 1.22248 0.86364 0.99332 0.93596 1.21125 0.87929 0.92343 0.94187 0.94499 1.22626 0.97709 0.98652 0.97588 1.23002 0.98062 1.00294 0.97329 1.21476 0.97703 0.90185 0.85983 1.44491 1.17496 1.61881 1.07446 1.19031 1.02090 1.23401 0.91632 0.90585 1.24898 0.99964 0.99560 0.95391 1.69943 1.37732 1.47385 1.01090 0.86078 0.81727 0.79991 0.78181 1.20375 1.21573 1.21712 0.90397 0.92018 0.91868 0.89941 0.90023 0.92016 0.88676 0.77042 0.92043 0.91081 0.91785 0.92408 0.92340 0.92306 0.90790 0.95656 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 7.93 37.16 0.29 -1.48 16 2 C -0.11 -1.07 3.66 -88.91 -0.33 -1.40 16 3 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.15 -1.27 6.71 -24.55 -0.16 -1.44 16 5 C 0.04 0.41 7.72 38.21 0.29 0.70 16 6 O -0.35 -4.95 10.74 -54.80 -0.59 -5.54 16 7 C 0.06 0.74 3.84 -27.30 -0.10 0.63 16 8 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 9 C 0.51 8.38 5.55 -10.99 -0.06 8.31 16 10 O -0.52 -11.34 16.52 -14.02 -0.23 -11.58 16 11 N -0.72 -10.64 3.69 -60.29 -0.22 -10.86 16 12 C 0.11 2.10 5.10 -4.04 -0.02 2.08 16 13 C 0.15 2.94 3.22 -66.95 -0.22 2.72 16 14 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 15 C -0.13 -2.06 6.07 -24.90 -0.15 -2.21 16 16 C -0.15 -2.66 7.09 -24.58 -0.17 -2.83 16 17 C 0.17 4.05 5.43 -2.53 -0.01 4.03 16 18 N -0.59 -14.47 3.13 -162.56 -0.51 -14.98 16 19 C -0.23 -6.37 9.73 -15.06 -0.15 -6.52 16 20 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 21 C 0.00 -0.03 5.47 -17.43 -0.10 -0.12 16 22 N -0.92 -26.62 10.55 55.49 0.59 -26.03 16 23 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H 0.08 0.87 5.19 -51.93 -0.27 0.60 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.87 7.58 -51.93 -0.39 0.47 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.77 7.86 -51.93 -0.41 0.37 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.40 4.46 7.27 -40.82 -0.30 4.16 16 35 H 0.06 1.32 8.03 -51.93 -0.42 0.90 16 36 H 0.07 1.58 7.87 -51.93 -0.41 1.17 16 37 H 0.06 1.03 7.78 -51.92 -0.40 0.62 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 1.95 6.87 -51.93 -0.36 1.59 16 42 H 0.03 0.65 8.08 -51.93 -0.42 0.24 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 337.10 15.07 5.08 5.08 Total: -1.00 -33.42 337.10 -8.94 -42.36 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -7.15 Total: 1.89 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -0.88 Total: 2.50 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: -0.14 Total: -51.87 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.82 Total: -17.12 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.42 -8.94 -42.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028142989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.713 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds