Wall clock time and date at job start Tue Mar 31 2020 06:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.32996 * 2 1 4 4 C 1.54483 * 110.37278 * 237.63720 * 2 1 3 5 5 C 1.54683 * 104.07523 * 217.09666 * 4 2 1 6 6 C 1.54476 * 103.98266 * 0.13689 * 5 4 2 7 7 H 1.09007 * 110.37190 * 264.96542 * 6 5 4 8 8 C 1.50698 * 110.37561 * 142.73966 * 6 5 4 9 9 O 1.21280 * 119.99749 * 246.55080 * 8 6 5 10 10 N 1.34776 * 120.00053 * 66.54617 * 8 6 5 11 11 C 1.46497 * 120.00085 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.47178 * 185.08986 * 11 10 8 13 13 H 1.08995 * 109.99561 * 303.46710 * 12 11 10 14 14 C 1.54323 * 109.88125 * 64.56731 * 12 11 10 15 15 C 1.55151 * 103.10372 * 141.52398 * 14 12 11 16 16 C 1.55131 * 101.48338 * 324.71301 * 15 14 12 17 17 N 1.47023 * 109.88047 * 182.37036 * 12 11 10 18 18 C 1.36938 * 125.65005 * 61.68325 * 17 12 11 19 19 H 1.08007 * 119.99650 * 13.61207 * 18 17 12 20 20 C 1.38811 * 120.00329 * 193.62009 * 18 17 12 21 21 N 1.31617 * 119.99609 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99984 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47266 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46989 * 119.99803 * 22 20 18 25 25 H 1.48495 * 109.47126 * 239.99493 * 22 20 18 26 26 O 1.44420 * 110.37265 * 122.25225 * 2 1 3 27 27 H 1.08998 * 109.47044 * 299.19812 * 1 2 3 28 28 H 1.08999 * 109.47155 * 59.20033 * 1 2 3 29 29 H 1.09010 * 109.46716 * 179.19902 * 1 2 3 30 30 H 1.09000 * 110.51006 * 335.83480 * 4 2 1 31 31 H 1.08991 * 110.51155 * 98.40485 * 4 2 1 32 32 H 1.08996 * 110.61126 * 241.48651 * 5 4 2 33 33 H 1.09005 * 110.48735 * 118.72401 * 5 4 2 34 34 H 0.97000 * 119.99693 * 359.97438 * 10 8 6 35 35 H 1.09003 * 109.47031 * 65.08778 * 11 10 8 36 36 H 1.08998 * 109.47079 * 305.08926 * 11 10 8 37 37 H 1.09000 * 110.71740 * 259.97361 * 14 12 11 38 38 H 1.09004 * 110.72286 * 23.06672 * 14 12 11 39 39 H 1.08997 * 111.01131 * 82.65614 * 15 14 12 40 40 H 1.09007 * 111.00776 * 206.51206 * 15 14 12 41 41 H 1.09004 * 110.20603 * 277.95792 * 16 15 14 42 42 H 1.09001 * 110.41564 * 155.70936 * 16 15 14 43 43 H 0.97004 * 119.99721 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0678 -0.7752 -1.2233 5 6 3.3207 -1.5054 -0.6848 6 6 3.3874 -1.0863 0.8005 7 1 4.0528 -0.2319 0.9242 8 6 3.8531 -2.2401 1.6508 9 8 3.0978 -2.7449 2.4542 10 7 5.1090 -2.7109 1.5183 11 6 5.5616 -3.8329 2.3445 12 6 7.0491 -4.0856 2.0907 13 1 7.2210 -4.2647 1.0294 14 6 7.8754 -2.8691 2.5585 15 6 9.1383 -3.5202 3.1815 16 6 8.5426 -4.8041 3.8166 17 7 7.4996 -5.2460 2.8731 18 6 7.0291 -6.5257 2.7458 19 1 6.4312 -6.7985 1.8887 20 6 7.3203 -7.4723 3.7185 21 7 8.0491 -7.1399 4.7628 22 14 6.6778 -9.2177 3.5451 23 1 5.8898 -9.3330 2.2917 24 1 7.8214 -10.1640 3.5002 25 1 5.8110 -9.5437 4.7060 26 8 2.0328 -0.7225 1.1450 27 1 -0.3633 0.5013 0.8971 28 1 -0.3633 0.5262 -0.8827 29 1 -0.3633 -1.0277 -0.0144 30 1 1.3276 -1.4934 -1.5759 31 1 2.3407 -0.0860 -2.0223 32 1 4.2142 -1.1761 -1.2151 33 1 3.1998 -2.5852 -0.7720 34 1 5.7129 -2.3074 0.8754 35 1 4.9922 -4.7262 2.0876 36 1 5.4079 -3.5943 3.3969 37 1 8.1449 -2.2375 1.7119 38 1 7.3281 -2.2957 3.3067 39 1 9.8694 -3.7694 2.4124 40 1 9.5776 -2.8730 3.9407 41 1 8.1033 -4.5749 4.7875 42 1 9.3114 -5.5700 3.9183 43 1 8.2530 -7.8015 5.4423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028151510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:09 Heat of formation + Delta-G solvation = -65.397344 kcal Electronic energy + Delta-G solvation = -22699.989721 eV Core-core repulsion = 19359.486670 eV Total energy + Delta-G solvation = -3340.503051 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.29114 -38.63135 -37.47324 -34.27112 -32.54786 -32.46022 -31.90321 -29.69069 -28.78607 -26.78206 -24.80674 -23.78505 -22.61028 -21.33842 -20.46427 -20.01498 -19.48871 -17.40484 -16.82373 -16.52195 -16.27911 -15.41110 -15.04653 -14.58789 -14.53543 -14.04710 -13.88946 -13.82941 -13.36703 -12.99245 -12.63649 -12.55749 -12.11154 -12.00830 -11.90073 -11.74272 -11.67491 -11.31566 -11.14111 -11.00316 -10.94588 -10.80737 -10.25435 -10.11589 -10.07051 -9.92646 -9.84627 -9.71751 -9.39934 -8.67940 -8.58342 -6.85593 -5.77058 -3.13771 2.81076 3.05406 3.39761 3.46304 3.48086 3.90957 4.28753 4.44598 4.50817 4.62335 4.78217 4.87564 5.06758 5.14964 5.22520 5.32813 5.39519 5.40167 5.48783 5.50550 5.60658 5.61557 5.73557 5.79650 5.80097 5.91127 6.04557 6.12229 6.23317 6.44617 6.52868 6.60195 6.61729 6.69842 6.81476 7.05269 7.51670 7.59951 7.77464 7.78958 8.24833 8.48957 9.16809 9.77360 10.44094 11.34667 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022596 B = 0.003774 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.880071 B = 7418.196168 C = 8163.723187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.065 3.935 3 H 0.070 0.930 4 C -0.149 4.149 5 C -0.145 4.145 6 C 0.058 3.942 7 H 0.092 0.908 8 C 0.511 3.489 9 O -0.522 6.522 10 N -0.720 5.720 11 C 0.110 3.890 12 C 0.152 3.848 13 H 0.038 0.962 14 C -0.126 4.126 15 C -0.149 4.149 16 C 0.171 3.829 17 N -0.589 5.589 18 C -0.234 4.234 19 H 0.077 0.923 20 C -0.002 4.002 21 N -0.915 5.915 22 Si 0.911 3.089 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.289 1.289 26 O -0.341 6.341 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.395 0.605 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.025 0.975 42 H 0.075 0.925 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.236 16.075 -12.526 21.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.007 3.993 3 H 0.088 0.912 4 C -0.187 4.187 5 C -0.183 4.183 6 C -0.003 4.003 7 H 0.110 0.890 8 C 0.295 3.705 9 O -0.397 6.397 10 N -0.373 5.373 11 C -0.015 4.015 12 C 0.044 3.956 13 H 0.055 0.945 14 C -0.164 4.164 15 C -0.188 4.188 16 C 0.047 3.953 17 N -0.313 5.313 18 C -0.362 4.362 19 H 0.094 0.906 20 C -0.199 4.199 21 N -0.561 5.561 22 Si 0.741 3.259 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.216 1.216 26 O -0.260 6.260 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.228 0.772 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.043 0.957 42 H 0.093 0.907 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.885 15.406 -11.582 20.467 hybrid contribution 0.025 -0.657 -0.454 0.799 sum -6.860 14.748 -12.036 20.235 Atomic orbital electron populations 1.21796 0.92978 1.03184 1.02399 1.23060 0.95696 0.95378 0.85123 0.91189 1.23037 0.97541 0.99803 0.98293 1.22941 0.99206 1.02430 0.93735 1.22853 0.86938 0.96552 0.93998 0.89047 1.20139 0.82399 0.84222 0.83777 1.90740 1.53934 1.58913 1.36076 1.46040 1.12752 1.36337 1.42188 1.22261 0.97385 0.87177 0.94646 1.21126 0.90092 0.88627 0.95767 0.94474 1.22606 0.97380 0.96707 0.99745 1.23043 0.96473 0.99478 0.99763 1.21515 0.91205 0.91621 0.90983 1.44498 1.41757 1.02609 1.42463 1.19038 1.28650 0.84370 1.04133 0.90557 1.24907 1.00215 0.98817 0.95967 1.69947 1.41396 1.33307 1.11492 0.86064 0.78164 0.84181 0.77472 1.20376 1.21704 1.21578 1.89306 1.25108 1.74200 1.37343 0.91707 0.91150 0.91595 0.90250 0.90254 0.89537 0.89939 0.77186 0.91527 0.91525 0.92432 0.91824 0.92313 0.92308 0.95709 0.90721 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.52 37.16 0.35 -0.87 16 2 C 0.07 0.62 3.92 -25.95 -0.10 0.52 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.15 -1.19 6.64 -25.07 -0.17 -1.35 16 5 C -0.15 -1.33 6.63 -25.07 -0.17 -1.50 16 6 C 0.06 0.71 3.70 -27.11 -0.10 0.61 16 7 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 8 C 0.51 8.40 7.07 -10.99 -0.08 8.33 16 9 O -0.52 -11.41 16.55 -13.65 -0.23 -11.64 16 10 N -0.72 -10.75 5.32 -60.30 -0.32 -11.07 16 11 C 0.11 2.14 5.07 -4.04 -0.02 2.12 16 12 C 0.15 2.97 3.22 -66.95 -0.22 2.75 16 13 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 14 C -0.13 -2.07 6.09 -24.90 -0.15 -2.22 16 15 C -0.15 -2.70 7.11 -24.47 -0.17 -2.87 16 16 C 0.17 4.08 5.43 -2.41 -0.01 4.07 16 17 N -0.59 -14.58 3.13 -162.43 -0.51 -15.09 16 18 C -0.23 -6.40 9.77 -15.06 -0.15 -6.55 16 19 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 20 C 0.00 -0.05 5.47 -17.43 -0.10 -0.15 16 21 N -0.92 -26.69 10.54 55.49 0.58 -26.11 16 22 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 26 O -0.34 -4.87 10.60 -54.44 -0.58 -5.45 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.61 8.12 -51.92 -0.42 0.19 16 30 H 0.08 0.63 7.86 -51.93 -0.41 0.23 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.88 7.87 -51.93 -0.41 0.47 16 34 H 0.39 4.45 8.33 -40.82 -0.34 4.11 16 35 H 0.07 1.47 7.92 -51.93 -0.41 1.06 16 36 H 0.07 1.47 8.08 -51.93 -0.42 1.05 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 1.04 7.81 -51.93 -0.41 0.64 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.02 0.65 8.08 -51.93 -0.42 0.23 16 42 H 0.07 1.98 6.86 -51.93 -0.36 1.62 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 345.15 15.07 5.20 5.20 Total: -1.00 -33.73 345.15 -9.31 -43.04 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -7.36 Total: 1.06 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -1.08 Total: 2.89 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.24 Total: -52.27 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.80 Total: -17.09 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.73 -9.31 -43.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028151510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.362 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds