Wall clock time and date at job start Tue Mar 31 2020 07:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.53722 * 2 1 4 4 C 1.54805 * 110.48570 * 237.38786 * 2 1 3 5 5 C 1.55001 * 102.09067 * 220.44112 * 4 2 1 6 6 O 1.44378 * 103.48734 * 37.02400 * 5 4 2 7 7 C 1.43746 * 106.97651 * 319.93761 * 6 5 4 8 8 H 1.08999 * 109.88123 * 266.93820 * 7 6 5 9 9 C 1.50708 * 109.87775 * 145.93923 * 7 6 5 10 10 O 1.21276 * 119.99671 * 356.45435 * 9 7 6 11 11 N 1.34777 * 119.99708 * 176.45643 * 9 7 6 12 12 C 1.46498 * 119.99530 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.46943 * 179.97438 * 12 11 9 14 14 H 1.09006 * 110.88352 * 57.42951 * 13 12 11 15 15 C 1.55157 * 111.00451 * 181.34924 * 13 12 11 16 16 C 1.54331 * 103.02099 * 153.38454 * 15 13 12 17 17 N 1.47021 * 107.26526 * 338.14342 * 16 15 13 18 18 C 1.36943 * 125.64958 * 178.84865 * 17 16 15 19 19 H 1.08002 * 119.99788 * 179.68595 * 18 17 16 20 20 C 1.38811 * 119.99622 * 359.96780 * 18 17 16 21 21 N 1.31614 * 120.00467 * 359.72375 * 20 18 17 22 22 Si 1.86801 * 119.99700 * 179.72266 * 20 18 17 23 23 H 1.48501 * 109.46896 * 89.99850 * 22 20 18 24 24 H 1.48499 * 109.47039 * 210.00011 * 22 20 18 25 25 H 1.48501 * 109.47275 * 329.99811 * 22 20 18 26 26 C 1.47423 * 108.70520 * 358.58242 * 17 16 15 27 27 H 1.09006 * 109.47223 * 297.38077 * 1 2 3 28 28 H 1.09000 * 109.47219 * 57.37959 * 1 2 3 29 29 H 1.08997 * 109.47276 * 177.37995 * 1 2 3 30 30 H 1.09004 * 110.91184 * 102.24667 * 4 2 1 31 31 H 1.09000 * 110.91337 * 338.63533 * 4 2 1 32 32 H 1.09000 * 110.61843 * 278.52190 * 5 4 2 33 33 H 1.08998 * 110.75294 * 155.58821 * 5 4 2 34 34 H 0.96999 * 120.00341 * 359.97438 * 11 9 7 35 35 H 1.08998 * 109.47046 * 59.99912 * 12 11 9 36 36 H 1.09001 * 109.47116 * 299.99992 * 12 11 9 37 37 H 1.09003 * 110.72238 * 271.94378 * 15 13 12 38 38 H 1.08998 * 110.72154 * 35.03955 * 15 13 12 39 39 H 1.09003 * 109.99500 * 218.66627 * 16 15 13 40 40 H 1.09008 * 109.77945 * 97.49669 * 16 15 13 41 41 H 0.96995 * 120.00147 * 180.02562 * 21 20 18 42 42 H 1.09000 * 110.36923 * 143.19518 * 26 17 16 43 43 H 1.08999 * 110.37105 * 265.52427 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0718 -0.7816 -1.2215 5 6 3.2660 -1.5560 -0.6078 6 8 2.7955 -1.9109 0.7102 7 6 2.0694 -0.7780 1.2158 8 1 2.7344 -0.1423 1.8003 9 6 0.9227 -1.2461 2.0745 10 8 0.6975 -2.4320 2.1916 11 7 0.1475 -0.3467 2.7122 12 6 -0.9675 -0.8016 3.5464 13 6 -1.6794 0.4101 4.1512 14 1 -2.0302 1.0846 3.3700 15 6 -2.8482 -0.0332 5.0704 16 6 -2.9714 1.1394 6.0662 17 7 -1.6824 1.8466 6.0692 18 6 -1.3861 2.9626 6.8054 19 1 -0.4036 3.4066 6.7412 20 6 -2.3465 3.5197 7.6385 21 7 -3.5437 2.9785 7.7168 22 14 -1.9398 5.0374 8.6486 23 1 -2.2696 6.2557 7.8661 24 1 -2.7344 5.0247 9.9031 25 1 -0.4922 5.0385 8.9796 26 6 -0.7597 1.1515 5.1533 27 1 -0.3634 0.4726 0.9126 28 1 -0.3634 0.5540 -0.8656 29 1 -0.3634 -1.0266 -0.0470 30 1 2.4103 -0.0991 -2.0011 31 1 1.3197 -1.4693 -1.6081 32 1 4.1456 -0.9157 -0.5419 33 1 3.4866 -2.4505 -1.1903 34 1 0.3279 0.6018 2.6188 35 1 -0.5870 -1.4360 4.3470 36 1 -1.6700 -1.3690 2.9360 37 1 -3.7668 -0.1523 4.4958 38 1 -2.5992 -0.9569 5.5927 39 1 -3.1880 0.7593 7.0646 40 1 -3.7641 1.8150 5.7444 41 1 -4.2149 3.3680 8.2986 42 1 -0.1309 1.8716 4.6297 43 1 -0.1450 0.4387 5.7028 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028807916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:03 Heat of formation + Delta-G solvation = -56.087453 kcal Electronic energy + Delta-G solvation = -22827.767669 eV Core-core repulsion = 19487.668324 eV Total energy + Delta-G solvation = -3340.099344 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.76184 -38.65425 -37.49561 -34.90713 -33.74144 -32.44302 -30.61325 -29.59359 -28.24007 -27.08651 -25.49838 -23.85851 -22.75823 -21.62479 -20.42385 -19.95204 -19.48924 -17.41137 -17.04849 -16.77448 -16.26844 -15.51051 -15.27115 -14.83461 -14.63553 -14.29649 -14.20286 -13.69761 -13.40402 -13.22046 -12.72967 -12.70166 -12.35246 -12.02000 -11.79650 -11.70315 -11.44304 -11.39874 -11.30243 -11.13789 -10.91551 -10.80697 -10.43907 -10.21624 -10.13211 -9.98427 -9.88205 -9.67113 -9.45336 -8.88264 -8.61475 -6.84731 -5.72668 -3.06362 2.61853 2.92776 3.38560 3.43642 3.45782 3.79526 4.09838 4.37702 4.47157 4.49363 4.71560 4.85803 5.00054 5.07396 5.13300 5.23247 5.29136 5.32460 5.41025 5.41597 5.52874 5.58911 5.63232 5.67857 5.75070 5.88819 5.97584 6.04536 6.06175 6.33362 6.41921 6.47536 6.51836 6.52709 6.68000 6.89809 7.53014 7.54647 7.62252 7.81424 8.24650 8.25506 9.20679 9.81154 10.47157 11.39044 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029936 B = 0.003379 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.091419 B = 8283.975285 C = 8669.841356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.116 4.116 3 H 0.094 0.906 4 C -0.150 4.150 5 C 0.043 3.957 6 O -0.347 6.347 7 C 0.060 3.940 8 H 0.094 0.906 9 C 0.518 3.482 10 O -0.526 6.526 11 N -0.723 5.723 12 C 0.133 3.867 13 C -0.117 4.117 14 H 0.079 0.921 15 C -0.135 4.135 16 C 0.177 3.823 17 N -0.606 5.606 18 C -0.230 4.230 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.142 3.858 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.402 0.598 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.047 0.953 41 H 0.252 0.748 42 H 0.035 0.965 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.308 -5.408 -17.802 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.135 4.135 3 H 0.112 0.888 4 C -0.188 4.188 5 C -0.033 4.033 6 O -0.265 6.265 7 C -0.002 4.002 8 H 0.112 0.888 9 C 0.303 3.697 10 O -0.401 6.401 11 N -0.378 5.378 12 C 0.010 3.990 13 C -0.137 4.137 14 H 0.098 0.902 15 C -0.174 4.174 16 C 0.053 3.947 17 N -0.333 5.333 18 C -0.358 4.358 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.016 3.984 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.238 0.762 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 9.065 -6.348 -17.421 20.639 hybrid contribution 0.243 1.517 0.453 1.601 sum 9.308 -4.832 -16.968 19.947 Atomic orbital electron populations 1.22237 0.93301 1.02948 1.03517 1.22499 0.97781 0.99961 0.93278 0.88762 1.23246 0.98474 0.99459 0.97594 1.23626 0.96057 1.00015 0.83632 1.89013 1.70704 1.35739 1.31063 1.22780 0.93048 0.88708 0.95637 0.88792 1.20231 0.83035 0.86520 0.79932 1.90710 1.70596 1.16498 1.62307 1.46199 1.32151 1.09849 1.49562 1.21399 0.87263 0.96800 0.93558 1.22613 0.97471 0.95733 0.97885 0.90227 1.22859 0.96426 1.00231 0.97859 1.21149 0.88454 0.89640 0.95492 1.44484 1.09292 1.30096 1.49407 1.19053 0.97578 1.01475 1.17695 0.90491 1.24807 0.96032 0.99506 1.00118 1.69961 1.03772 1.41352 1.41816 0.86120 0.77405 0.82635 0.79602 1.21610 1.21666 1.20709 1.21565 0.92371 0.93962 0.90534 0.90514 0.91867 0.92011 0.89816 0.90079 0.91870 0.88607 0.76230 0.91350 0.91638 0.91973 0.92218 0.93930 0.93529 0.93744 0.94686 0.96302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 7.92 37.16 0.29 -1.16 16 2 C -0.12 -0.95 3.64 -89.10 -0.32 -1.27 16 3 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.15 -1.09 6.71 -24.72 -0.17 -1.25 16 5 C 0.04 0.36 7.72 38.21 0.29 0.65 16 6 O -0.35 -4.48 10.74 -54.80 -0.59 -5.07 16 7 C 0.06 0.66 3.84 -27.31 -0.10 0.55 16 8 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 9 C 0.52 7.25 5.54 -10.98 -0.06 7.18 16 10 O -0.53 -9.70 16.53 -14.00 -0.23 -9.93 16 11 N -0.72 -8.98 3.70 -60.29 -0.22 -9.20 16 12 C 0.13 1.89 5.12 -4.04 -0.02 1.87 16 13 C -0.12 -1.88 3.11 -88.47 -0.27 -2.16 16 14 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 15 C -0.13 -2.43 6.42 -24.89 -0.16 -2.58 16 16 C 0.18 4.24 5.38 -3.06 -0.02 4.23 16 17 N -0.61 -15.23 3.39 -170.06 -0.58 -15.80 16 18 C -0.23 -6.34 10.28 -15.06 -0.15 -6.49 16 19 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 21 N -0.92 -26.95 10.31 55.49 0.57 -26.37 16 22 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.14 2.79 6.41 -2.53 -0.02 2.77 16 27 H 0.08 0.70 5.23 -51.93 -0.27 0.43 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.67 7.58 -51.93 -0.39 0.28 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.64 7.85 -51.93 -0.41 0.23 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.40 4.17 7.40 -40.82 -0.30 3.87 16 35 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 39 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 40 H 0.05 1.23 7.38 -51.92 -0.38 0.85 16 41 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.02 0.39 8.00 -51.93 -0.42 -0.03 16 LS Contribution 337.74 15.07 5.09 5.09 Total: -1.00 -33.65 337.74 -8.96 -42.61 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -7.17 Total: -0.24 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -0.81 Total: 2.01 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -0.23 Total: -51.38 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.82 Total: -15.00 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.65 -8.96 -42.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028807916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.474 kcal (2) G-P(sol) polarization free energy of solvation -33.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds