Wall clock time and date at job start Tue Mar 31 2020 07:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.53722 * 2 1 4 4 C 1.54805 * 110.48570 * 237.38786 * 2 1 3 5 5 C 1.55001 * 102.09067 * 220.44112 * 4 2 1 6 6 O 1.44378 * 103.48734 * 37.02400 * 5 4 2 7 7 C 1.43746 * 106.97651 * 319.93761 * 6 5 4 8 8 H 1.08999 * 109.88123 * 266.93820 * 7 6 5 9 9 C 1.50708 * 109.87775 * 145.93923 * 7 6 5 10 10 O 1.21276 * 119.99671 * 356.45435 * 9 7 6 11 11 N 1.34777 * 119.99708 * 176.45643 * 9 7 6 12 12 C 1.46498 * 119.99530 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.46943 * 179.97438 * 12 11 9 14 14 H 1.09006 * 110.88352 * 57.42951 * 13 12 11 15 15 C 1.55157 * 111.00451 * 181.34924 * 13 12 11 16 16 C 1.54331 * 103.02099 * 153.38454 * 15 13 12 17 17 N 1.47021 * 107.26526 * 338.14342 * 16 15 13 18 18 C 1.36943 * 125.64958 * 178.84865 * 17 16 15 19 19 H 1.08002 * 119.99788 * 179.68595 * 18 17 16 20 20 C 1.38811 * 119.99622 * 359.96780 * 18 17 16 21 21 N 1.31614 * 120.00467 * 359.72375 * 20 18 17 22 22 Si 1.86801 * 119.99700 * 179.72266 * 20 18 17 23 23 H 1.48501 * 109.46896 * 89.99850 * 22 20 18 24 24 H 1.48499 * 109.47039 * 210.00011 * 22 20 18 25 25 H 1.48501 * 109.47275 * 329.99811 * 22 20 18 26 26 C 1.47423 * 108.70520 * 358.58242 * 17 16 15 27 27 H 1.09006 * 109.47223 * 297.38077 * 1 2 3 28 28 H 1.09000 * 109.47219 * 57.37959 * 1 2 3 29 29 H 1.08997 * 109.47276 * 177.37995 * 1 2 3 30 30 H 1.09004 * 110.91184 * 102.24667 * 4 2 1 31 31 H 1.09000 * 110.91337 * 338.63533 * 4 2 1 32 32 H 1.09000 * 110.61843 * 278.52190 * 5 4 2 33 33 H 1.08998 * 110.75294 * 155.58821 * 5 4 2 34 34 H 0.96999 * 120.00341 * 359.97438 * 11 9 7 35 35 H 1.08998 * 109.47046 * 59.99912 * 12 11 9 36 36 H 1.09001 * 109.47116 * 299.99992 * 12 11 9 37 37 H 1.09003 * 110.72238 * 271.94378 * 15 13 12 38 38 H 1.08998 * 110.72154 * 35.03955 * 15 13 12 39 39 H 1.09003 * 109.99500 * 218.66627 * 16 15 13 40 40 H 1.09008 * 109.77945 * 97.49669 * 16 15 13 41 41 H 0.96995 * 120.00147 * 180.02562 * 21 20 18 42 42 H 1.09000 * 110.36923 * 143.19518 * 26 17 16 43 43 H 1.08999 * 110.37105 * 265.52427 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0718 -0.7816 -1.2215 5 6 3.2660 -1.5560 -0.6078 6 8 2.7955 -1.9109 0.7102 7 6 2.0694 -0.7780 1.2158 8 1 2.7344 -0.1423 1.8003 9 6 0.9227 -1.2461 2.0745 10 8 0.6975 -2.4320 2.1916 11 7 0.1475 -0.3467 2.7122 12 6 -0.9675 -0.8016 3.5464 13 6 -1.6794 0.4101 4.1512 14 1 -2.0302 1.0846 3.3700 15 6 -2.8482 -0.0332 5.0704 16 6 -2.9714 1.1394 6.0662 17 7 -1.6824 1.8466 6.0692 18 6 -1.3861 2.9626 6.8054 19 1 -0.4036 3.4066 6.7412 20 6 -2.3465 3.5197 7.6385 21 7 -3.5437 2.9785 7.7168 22 14 -1.9398 5.0374 8.6486 23 1 -2.2696 6.2557 7.8661 24 1 -2.7344 5.0247 9.9031 25 1 -0.4922 5.0385 8.9796 26 6 -0.7597 1.1515 5.1533 27 1 -0.3634 0.4726 0.9126 28 1 -0.3634 0.5540 -0.8656 29 1 -0.3634 -1.0266 -0.0470 30 1 2.4103 -0.0991 -2.0011 31 1 1.3197 -1.4693 -1.6081 32 1 4.1456 -0.9157 -0.5419 33 1 3.4866 -2.4505 -1.1903 34 1 0.3279 0.6018 2.6188 35 1 -0.5870 -1.4360 4.3470 36 1 -1.6700 -1.3690 2.9360 37 1 -3.7668 -0.1523 4.4958 38 1 -2.5992 -0.9569 5.5927 39 1 -3.1880 0.7593 7.0646 40 1 -3.7641 1.8150 5.7444 41 1 -4.2149 3.3680 8.2986 42 1 -0.1309 1.8716 4.6297 43 1 -0.1450 0.4387 5.7028 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028807916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:02 Heat of formation + Delta-G solvation = -78.236617 kcal Electronic energy + Delta-G solvation = -22828.728128 eV Core-core repulsion = 19487.668324 eV Total energy + Delta-G solvation = -3341.059804 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.67829 -39.77219 -38.95116 -36.19070 -34.82225 -34.00617 -31.85422 -30.95877 -29.70459 -27.98812 -27.14753 -25.32416 -23.62418 -22.50108 -21.91464 -21.43081 -20.67826 -18.86590 -18.19829 -17.86019 -17.32917 -16.85109 -16.54984 -16.20940 -15.80676 -15.55063 -15.33320 -14.89612 -14.62582 -14.31861 -13.99800 -13.81191 -13.65368 -13.44501 -13.36961 -13.01043 -12.78220 -12.61663 -12.35663 -12.21119 -12.01917 -11.96188 -11.90884 -11.82204 -11.71679 -11.51445 -11.45115 -11.05558 -10.69563 -10.47529 -10.00200 -8.88725 -7.83927 -5.19501 1.46964 1.48880 1.57135 1.57432 1.95720 2.50586 3.04553 3.34550 3.43008 3.60507 3.63296 3.77632 3.85541 4.02029 4.03998 4.05870 4.28517 4.32912 4.45541 4.49683 4.62412 4.65248 4.71691 4.74716 4.81712 4.85762 4.92739 4.95747 5.06071 5.06765 5.08944 5.16711 5.30406 5.35806 5.46434 5.47142 5.68494 5.78905 5.81701 6.21209 6.53262 7.11461 7.21465 7.79436 8.43771 9.26626 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029936 B = 0.003379 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.091419 B = 8283.975285 C = 8669.841356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.111 4.111 3 H 0.126 0.874 4 C -0.146 4.146 5 C 0.036 3.964 6 O -0.387 6.387 7 C 0.058 3.942 8 H 0.116 0.884 9 C 0.516 3.484 10 O -0.578 6.578 11 N -0.711 5.711 12 C 0.145 3.855 13 C -0.093 4.093 14 H 0.094 0.906 15 C -0.124 4.124 16 C 0.183 3.817 17 N -0.629 5.629 18 C -0.242 4.242 19 H 0.085 0.915 20 C -0.069 4.069 21 N -0.952 5.952 22 Si 0.979 3.021 23 H -0.283 1.283 24 H -0.298 1.298 25 H -0.269 1.269 26 C 0.138 3.862 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.034 0.966 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.415 0.585 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.002 0.998 40 H 0.014 0.986 41 H 0.246 0.754 42 H 0.053 0.947 43 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.926 -4.234 -19.784 22.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.130 4.130 3 H 0.144 0.856 4 C -0.183 4.183 5 C -0.040 4.040 6 O -0.306 6.306 7 C -0.004 4.004 8 H 0.133 0.867 9 C 0.303 3.697 10 O -0.457 6.457 11 N -0.365 5.365 12 C 0.021 3.979 13 C -0.113 4.113 14 H 0.112 0.888 15 C -0.163 4.163 16 C 0.058 3.942 17 N -0.355 5.355 18 C -0.371 4.371 19 H 0.103 0.897 20 C -0.261 4.261 21 N -0.602 5.602 22 Si 0.807 3.193 23 H -0.210 1.210 24 H -0.224 1.224 25 H -0.194 1.194 26 C 0.013 3.987 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.131 0.869 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.253 0.747 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.020 0.980 40 H 0.032 0.968 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 10.721 -5.151 -19.437 22.787 hybrid contribution -0.223 1.115 1.056 1.552 sum 10.498 -4.036 -18.380 21.548 Atomic orbital electron populations 1.22209 0.94058 1.01427 1.04146 1.22582 0.97052 1.01178 0.92140 0.85642 1.23252 0.97663 0.99528 0.97861 1.23891 0.97127 1.00986 0.81976 1.88974 1.71158 1.37226 1.33254 1.22958 0.92155 0.88689 0.96549 0.86679 1.20882 0.83429 0.85813 0.79555 1.90683 1.72106 1.18714 1.64173 1.46056 1.31347 1.10464 1.48679 1.21139 0.87785 0.95538 0.93459 1.22409 0.95755 0.96097 0.97006 0.88751 1.22724 0.98571 0.97902 0.97061 1.20911 0.87559 0.90778 0.94928 1.44815 1.10632 1.29976 1.50117 1.19490 0.97823 1.02133 1.17640 0.89726 1.25669 0.96092 1.02664 1.01708 1.70191 1.04636 1.42756 1.42583 0.85076 0.77550 0.79132 0.77559 1.21025 1.22428 1.19357 1.21754 0.92377 0.94168 0.90445 0.90803 0.90162 0.94664 0.86911 0.91328 0.89731 0.88113 0.74682 0.92752 0.90871 0.89563 0.91411 0.98021 0.96769 0.94496 0.92876 0.96693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 7.92 71.98 0.57 -1.91 16 2 C -0.11 -1.45 3.64 -9.81 -0.04 -1.48 16 3 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.15 -1.68 6.71 31.90 0.21 -1.47 16 5 C 0.04 0.51 7.72 72.67 0.56 1.07 16 6 O -0.39 -9.54 10.74 -130.27 -1.40 -10.94 16 7 C 0.06 1.15 3.84 30.22 0.12 1.26 16 8 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 9 C 0.52 13.85 5.54 87.66 0.49 14.34 16 10 O -0.58 -21.39 16.53 15.69 0.26 -21.13 16 11 N -0.71 -16.23 3.70 -463.06 -1.71 -17.94 16 12 C 0.14 3.86 5.12 86.38 0.44 4.30 16 13 C -0.09 -2.81 3.11 -9.40 -0.03 -2.84 16 14 H 0.09 2.64 8.14 -2.38 -0.02 2.62 16 15 C -0.12 -4.33 6.42 31.79 0.20 -4.13 16 16 C 0.18 8.98 5.38 86.73 0.47 9.44 16 17 N -0.63 -31.67 3.39 -691.96 -2.35 -34.02 16 18 C -0.24 -13.37 10.28 84.03 0.86 -12.50 16 19 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 20 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 21 N -0.95 -57.42 10.31 21.65 0.22 -57.19 16 22 Si 0.98 45.37 29.55 68.60 2.03 47.40 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 26 C 0.14 5.20 6.41 86.86 0.56 5.76 16 27 H 0.07 1.15 5.23 -2.38 -0.01 1.14 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.03 0.73 7.58 -2.39 -0.02 0.71 16 30 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.07 0.97 7.85 -2.39 -0.02 0.95 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.42 7.38 7.40 -92.71 -0.69 6.69 16 35 H 0.05 1.64 8.10 -2.39 -0.02 1.62 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.07 2.27 8.04 -2.39 -0.02 2.25 16 39 H 0.00 0.09 7.51 -2.39 -0.02 0.07 16 40 H 0.01 0.77 7.38 -2.38 -0.02 0.75 16 41 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 42 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.02 0.60 8.00 -2.39 -0.02 0.58 16 Total: -1.00 -76.04 337.74 2.23 -73.80 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.30 Total: 11.58 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 4.88 Total: 8.43 kcal Atomic # 7 Polarization: -105.31 SS G_CDS: -3.84 Total: -109.15 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -1.14 Total: -32.07 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -76.04 2.23 -73.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028807916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.433 kcal (2) G-P(sol) polarization free energy of solvation -76.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds