Wall clock time and date at job start Tue Mar 31 2020 06:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 110.42009 * 2 1 4 4 C 1.54481 * 110.37229 * 237.69781 * 2 1 3 5 5 C 1.54502 * 104.06527 * 217.18659 * 4 2 1 6 6 C 1.54486 * 104.06286 * 359.97438 * 5 4 2 7 7 H 1.09006 * 110.46463 * 265.10330 * 6 5 4 8 8 C 1.50690 * 110.37434 * 142.81005 * 6 5 4 9 9 O 1.21284 * 120.00263 * 248.16407 * 8 6 5 10 10 N 1.34783 * 120.00182 * 68.16500 * 8 6 5 11 11 C 1.46500 * 120.00323 * 179.97438 * 10 8 6 12 12 C 1.52999 * 109.47166 * 180.02562 * 11 10 8 13 13 H 1.09003 * 110.63658 * 305.70035 * 12 11 10 14 14 C 1.55154 * 110.71693 * 182.56105 * 12 11 10 15 15 C 1.54916 * 101.58127 * 205.95634 * 14 12 11 16 16 N 1.47422 * 104.83003 * 37.00852 * 15 14 12 17 17 C 1.36937 * 125.64753 * 155.91114 * 16 15 14 18 18 H 1.08001 * 120.00004 * 353.89834 * 17 16 15 19 19 C 1.38815 * 119.99898 * 173.90358 * 17 16 15 20 20 N 1.31615 * 120.00247 * 6.82283 * 19 17 16 21 21 Si 1.86800 * 119.99918 * 186.82923 * 19 17 16 22 22 H 1.48494 * 109.47274 * 94.97947 * 21 19 17 23 23 H 1.48494 * 109.47179 * 214.98258 * 21 19 17 24 24 H 1.48508 * 109.46982 * 334.98212 * 21 19 17 25 25 C 1.47031 * 108.70507 * 335.87421 * 16 15 14 26 26 O 1.44421 * 104.80271 * 23.97588 * 6 5 4 27 27 H 1.09002 * 109.47168 * 299.13458 * 1 2 3 28 28 H 1.08997 * 109.47720 * 59.14043 * 1 2 3 29 29 H 1.09008 * 109.47125 * 179.14149 * 1 2 3 30 30 H 1.09004 * 110.50925 * 335.83178 * 4 2 1 31 31 H 1.09003 * 110.51637 * 98.40092 * 4 2 1 32 32 H 1.09006 * 110.51405 * 241.35341 * 5 4 2 33 33 H 1.09005 * 110.51625 * 118.63972 * 5 4 2 34 34 H 0.96998 * 119.99709 * 0.02562 * 10 8 6 35 35 H 1.08995 * 109.46700 * 59.99977 * 11 10 8 36 36 H 1.09002 * 109.47193 * 300.00516 * 11 10 8 37 37 H 1.09005 * 111.00658 * 324.02750 * 14 12 11 38 38 H 1.09001 * 111.00726 * 87.88204 * 14 12 11 39 39 H 1.08992 * 110.36905 * 155.84628 * 15 14 12 40 40 H 1.08996 * 110.36452 * 278.17311 * 15 14 12 41 41 H 0.97004 * 120.00263 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.88200 * 241.64209 * 25 16 15 43 43 H 1.08992 * 109.88119 * 120.48019 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 6 2.0677 -0.7739 -1.2241 5 6 3.3177 -1.5055 -0.6862 6 6 3.3878 -1.0866 0.7991 7 1 4.0534 -0.2323 0.9232 8 6 3.8535 -2.2410 1.6484 9 8 3.0900 -2.7639 2.4324 10 7 5.1185 -2.6925 1.5368 11 6 5.5715 -3.8144 2.3629 12 6 7.0353 -4.1246 2.0433 13 1 7.1680 -4.2924 0.9745 14 6 7.5266 -5.3511 2.8567 15 6 9.0501 -5.0817 2.9361 16 7 9.1674 -3.6199 3.0873 17 6 10.2274 -2.9580 3.6470 18 1 11.0272 -3.5151 4.1122 19 6 10.2740 -1.5710 3.6166 20 7 9.2408 -0.8874 3.1722 21 14 11.8031 -0.6746 4.2064 22 1 12.6805 -0.3765 3.0461 23 1 11.4085 0.5950 4.8678 24 1 12.5359 -1.5300 5.1742 25 6 7.9580 -2.9904 2.5368 26 8 2.0334 -0.7229 1.1442 27 1 -0.3633 0.5003 0.8977 28 1 -0.3634 0.5271 -0.8821 29 1 -0.3634 -1.0276 -0.0154 30 1 1.3275 -1.4918 -1.5774 31 1 2.3405 -0.0839 -2.0226 32 1 4.2109 -1.1770 -1.2178 33 1 3.1955 -2.5852 -0.7735 34 1 5.7293 -2.2740 0.9101 35 1 4.9594 -4.6912 2.1518 36 1 5.4779 -3.5510 3.4164 37 1 7.0800 -5.3649 3.8510 38 1 7.3213 -6.2802 2.3250 39 1 9.4804 -5.5881 3.7999 40 1 9.5413 -5.4088 2.0197 41 1 9.2734 0.0819 3.1506 42 1 8.2250 -2.3406 1.7034 43 1 7.4545 -2.4137 3.3126 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028808155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:14 Heat of formation + Delta-G solvation = -66.294451 kcal Electronic energy + Delta-G solvation = -22603.172380 eV Core-core repulsion = 19262.630428 eV Total energy + Delta-G solvation = -3340.541953 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.28022 -38.64629 -37.48168 -34.48914 -32.63471 -32.43308 -31.82656 -29.94083 -28.07292 -26.90813 -25.33009 -23.58383 -22.55415 -21.29259 -20.59052 -19.87602 -19.52795 -17.24373 -16.85967 -16.67333 -16.28685 -15.48745 -15.25260 -14.59081 -14.49594 -14.03507 -13.96270 -13.73055 -13.40178 -12.84168 -12.61869 -12.53360 -12.40571 -11.97803 -11.80294 -11.69679 -11.58515 -11.56710 -11.10314 -10.95789 -10.89383 -10.80900 -10.52946 -10.07725 -10.04343 -9.95510 -9.92253 -9.63825 -9.41733 -8.76477 -8.60552 -6.84022 -5.74982 -3.06421 2.76604 3.07121 3.38955 3.44499 3.46340 3.93588 4.33474 4.48999 4.49733 4.68381 4.81066 4.95994 5.10493 5.16078 5.24904 5.29804 5.38184 5.40296 5.44910 5.52438 5.54234 5.64835 5.69545 5.76495 5.83447 5.93238 5.93702 6.06687 6.09183 6.31571 6.41437 6.58264 6.61466 6.66790 6.74932 6.94176 7.52456 7.54075 7.74056 7.78330 8.23580 8.43226 9.20091 9.80841 10.47470 11.37533 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020819 B = 0.003745 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.632368 B = 7474.878359 C = 8361.078356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.065 3.935 3 H 0.071 0.929 4 C -0.149 4.149 5 C -0.144 4.144 6 C 0.058 3.942 7 H 0.097 0.903 8 C 0.518 3.482 9 O -0.529 6.529 10 N -0.716 5.716 11 C 0.139 3.861 12 C -0.132 4.132 13 H 0.072 0.928 14 C -0.123 4.123 15 C 0.133 3.867 16 N -0.608 5.608 17 C -0.228 4.228 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.921 5.921 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.185 3.815 26 O -0.342 6.342 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.404 0.596 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.039 0.961 40 H 0.019 0.981 41 H 0.251 0.749 42 H 0.043 0.957 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.083 -0.775 -10.706 16.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.007 3.993 3 H 0.089 0.911 4 C -0.187 4.187 5 C -0.182 4.182 6 C -0.004 4.004 7 H 0.115 0.885 8 C 0.302 3.698 9 O -0.405 6.405 10 N -0.369 5.369 11 C 0.015 3.985 12 C -0.152 4.152 13 H 0.090 0.910 14 C -0.162 4.162 15 C 0.007 3.993 16 N -0.334 5.334 17 C -0.356 4.356 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.568 5.568 21 Si 0.741 3.259 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.206 1.206 25 C 0.060 3.940 26 O -0.260 6.260 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.238 0.762 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.036 0.964 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.691 -0.990 -9.875 16.910 hybrid contribution 1.306 0.872 -0.194 1.582 sum -12.385 -0.118 -10.069 15.962 Atomic orbital electron populations 1.21785 0.93000 1.03039 1.02427 1.23061 0.95606 0.95551 0.85076 0.91071 1.23006 0.97470 0.99799 0.98375 1.22903 0.99397 1.02108 0.93822 1.22851 0.86980 0.96737 0.93817 0.88531 1.20094 0.82217 0.84137 0.83346 1.90703 1.54240 1.58323 1.37247 1.45896 1.11977 1.35822 1.43191 1.21355 0.94159 0.87717 0.95232 1.22762 0.93609 0.99027 0.99794 0.91000 1.22703 0.97651 0.96110 0.99698 1.21556 0.92929 0.86898 0.97902 1.44491 1.18631 0.99646 1.70650 1.19081 0.97535 0.89175 1.29853 0.90426 1.24804 0.97912 0.96221 1.01460 1.69955 1.28466 1.05806 1.52606 0.86118 0.82468 0.79307 0.78024 1.21657 1.21782 1.20649 1.21201 0.85172 0.90161 0.97432 1.89278 1.25113 1.74212 1.37440 0.91705 0.91154 0.91700 0.90356 0.90184 0.89373 0.90147 0.76161 0.92147 0.91285 0.91415 0.91973 0.94266 0.96371 0.93825 0.93891 0.93605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.52 37.15 0.35 -0.89 16 2 C 0.06 0.66 3.92 -25.96 -0.10 0.56 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.15 -1.25 6.63 -25.17 -0.17 -1.41 16 5 C -0.14 -1.40 6.62 -25.16 -0.17 -1.57 16 6 C 0.06 0.75 3.71 -27.11 -0.10 0.65 16 7 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 8 C 0.52 8.50 7.07 -10.99 -0.08 8.42 16 9 O -0.53 -10.91 16.56 -13.64 -0.23 -11.13 16 10 N -0.72 -10.88 5.44 -60.30 -0.33 -11.21 16 11 C 0.14 2.28 5.01 -4.04 -0.02 2.26 16 12 C -0.13 -2.30 2.98 -88.79 -0.26 -2.56 16 13 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 14 C -0.12 -2.06 6.53 -24.58 -0.16 -2.22 16 15 C 0.13 2.70 7.23 -2.53 -0.02 2.69 16 16 N -0.61 -15.31 3.39 -170.07 -0.58 -15.89 16 17 C -0.23 -6.33 10.26 -15.06 -0.15 -6.48 16 18 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 19 C -0.01 -0.22 5.48 -17.43 -0.10 -0.31 16 20 N -0.92 -26.45 10.36 55.49 0.58 -25.88 16 21 Si 0.91 21.95 29.56 -169.99 -5.02 16.93 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.19 4.26 4.79 -3.06 -0.01 4.25 16 26 O -0.34 -5.04 10.60 -54.42 -0.58 -5.62 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.59 8.12 -51.92 -0.42 0.17 16 30 H 0.08 0.62 7.86 -51.93 -0.41 0.21 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 34 H 0.40 5.44 8.41 -40.82 -0.34 5.09 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 1.29 8.01 -51.93 -0.42 0.87 16 37 H 0.07 1.15 8.05 -51.93 -0.42 0.73 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.04 1.08 7.37 -51.93 -0.38 0.70 16 43 H 0.05 1.20 7.14 -51.93 -0.37 0.83 16 LS Contribution 345.53 15.07 5.21 5.21 Total: -1.00 -33.58 345.53 -9.30 -42.88 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.37 Total: 1.33 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -0.99 Total: 3.38 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -0.33 Total: -52.98 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.80 Total: -16.75 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.58 -9.30 -42.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028808155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.412 kcal (2) G-P(sol) polarization free energy of solvation -33.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds